mRNA_L-elsbetiae_contig6970.15748.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig6970.15748.1 vs. uniprot
Match: D7G531_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G531_ECTSI) HSP 1 Score: 139 bits (351), Expect = 7.210e-30 Identity = 198/547 (36.20%), Postives = 234/547 (42.78%), Query Frame = 2
Query: 1097 RVSPVASAMPHGLTVQELKELTKMRLAREAFSIPVHKASASILPGEPHSSSGXXXXXXXXXXXXXXXXXXXXXXXXXXCERRRRQRYPESRSPMSRSTPSSPGVGPDGGRLHRRTRRGGRRGRKSRSPRPDGQHSPRLGDGDGXXXXXXXXXXXXXXXXXX---PRAGGRSLADDRYPWGNLLDDDDHGHPRSASQPRTVSRDDHRHFSAXXXXXXXXXXXXXXXXXXXXXXXXXXXSCRNRQRSDAAPEDEASPPVAAGDPVDAGASSAGPSSRGRPVGLPLLSAG--TAGGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSLSAQP------------GSGSGPSSLEMGDAASWAQEVGADDRPGRRDSG--GGSRREASSAGDHYRPHHGDTSGSSRGRERDVMERT-GMSARDRPRSLHHLD-------RRNFAEEXXXXXXXXXXFRQAGHHRGP--AAPHVNGMIGSERLSTLRGFEDGAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSSLPRMHRASSDGHVMTS 2650
R + ASAMPHGLTVQELKELTK+RLAREA + P AS S LPG + RRR + +SRSP+ RS+PS+PGV R HRRTRRGGRRGR +RSPRP+GQ+SP+LG D PR RS++D PW DD+ HPRS+SQPR VSRDD++ S R ++AA E ++ D L L + G T+GG GXXXXXXXXXXXXXXX + S+ GSG S L MGD WAQE R RR G GG R ++ AG HH D G GR+RD +ER G + DRPRSLHHLD RR FAEE RGP + V+GMIG ERL+ L GFE+ A P S PRM RA SDG V S
Sbjct: 118 RGAQFASAMPHGLTVQELKELTKIRLAREALTAPAQPAS-SALPGAQQERNNPCSDGGGGDFGRGRAVSPARSGDLG----RRRGGHADSRSPVPRSSPSTPGVED---RPHRRTRRGGRRGR-NRSPRPNGQYSPKLGGEDSHQHRDLRHHLYHDGYSSASPSPRIR-RSMSD---PWAYADDDE---HPRSSSQPRAVSRDDNQVASGEVSGGGSIGPAPAASGVGRGGGASSGVE-RGPTEAEAAAAAERLSAISCPD-------------------LTLEAKGHPTSGGGGXXXXXXXXXXXXXXXRGLPTEQQPPSTMLPEAASSSSGRRPVSMPLPSAGGSGQSSSLLMMGDEL-WAQEF----RDLRRQDGAAGGVRGSSADAGITAGDHH-DRGG---GRDRDPLERAAGGWSGDRPRSLHHLDGGQLAEERRRFAEEQVR-------------ERGPGGSTARVHGMIGGERLTPLSGFEESDASASHARRFYQEQQHQRQYH----------------PHSYPRMQRARSDGLVAES 590
BLAST of mRNA_L-elsbetiae_contig6970.15748.1 vs. uniprot
Match: A0A6H5KAZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAZ7_9PHAE) HSP 1 Score: 132 bits (333), Expect = 1.260e-27 Identity = 215/620 (34.68%), Postives = 259/620 (41.77%), Query Frame = 2
Query: 770 SAVGEHA---PPGP-RQRSSGLPAAEVAAISPA---------DEPAVPATPSSTCS--GHSSRSGGPMSGG---LGERSLSPLG-GRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSRVSPVASAMPHGLTVQELKELTK-MRLAREAFSIPVHKASASILPG-----EPHSSSGXXXXXXXXXXXXXXXXXXXXXXXXXXCERRRRQRYPESRSPMSRSTPSSPGVGPDGGRLHRRTRRGGRRGR-----------KSRSPRPDGQH-SPRLGDGDGXXXXXXXXXXXXXXXXXX---PRAGGRSLADDRYPWGNLLDDDDHGHPRSASQPRTVSRDDHRHFSAXXXXXXXXXXXXXXXXXXXXXXXXXXXSCRNRQRSDAAPEDEASPPVAAGD-PVDAGASSAGPSSRGRPVGLPLLSAGTAGGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSLS----AQPGSGSGPSSLEMGDAASWAQEVGADDRPGRRDSG--GGSRREASSAGDHYRPHHGDTSGSSRGRERDVMERT-GMSARDRPRSLHHLDRRNFAEEXXXXXXXXXXFRQAGHHRGP--AAPHVNGMIGSERLSTLRGFED 2479
S VG A PP P RQ + AA AA++ + D PA+P TPSST S GHSSRSG + GG LG RS+SP+G GR + R + ASAMPHGLTVQELKELTK MRLAREA + P AS S LPG P S G R R + +SRSP+ RS+PS+PGV R HRRTRRGGRRG +SRSPRP+GQ+ SP+LGD D PR R + D PW DD H RS+SQPR VSRDD++ R ++AA E +++ D ++A +G P +G G G XXXXXX R +S + GSG S L +GD WAQE R RR G GG R A+ AG HH D G GR+ D +ER G + DRPRSLHHLDR AEE RGP + V+GMIG ERL+ L GFE+
Sbjct: 5 STVGGSAGDQPPHPLRQDGMNVTAAAAAAVASSGPVGRGHGGDVPAMPPTPSSTTSSGGHSSRSG--VRGGNVNLGGRSVSPIGNGRRRQSPLARPLGGSSRGGGAGA------------------APRGAQFASAMPHGLTVQELKELTKVMRLAREALTAPAPPAS-SALPGTQQRNNPGSDGGLGDFGRGRAISPALSGDLG----------RPRGGHADSRSPVPRSSPSTPGVED---RPHRRTRRGGRRGPNXXXXXXXPVVESRSPRPNGQYYSPKLGDEDSHQHRDLRHHLYHDGYSSASPSPRIR-RGMTD---PWAYADDDQ---HLRSSSQPRAVSRDDNQ--VTPLEVSGGGSIGPAPAASGVGREGDPGGGERGSTEAEAAAAAERLSAISSPDLTLEA---------KGHPT---FGGSGDGAGYGSPHXXXXXXGRPNQQQPSTMLPEAASSSSGRRPVSMPLPSAGGSGQSSSLLMVGDEL-WAQEF----RDLRRQGGAAGGGRGSAADAGISAGDHH-DRGG---GRDGDPLERAAGGWSEDRPRSLHHLDRGQLAEERRRFAEDQVR------ERGPGGSTARVHGMIGGERLTPLSGFEE 554 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6970.15748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6970.15748.1 >prot_L-elsbetiae_contig6970.15748.1 ID=prot_L-elsbetiae_contig6970.15748.1|Name=mRNA_L-elsbetiae_contig6970.15748.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=944bp MSPTPTDVGMPGNSQQQEPAAPVKETQLFAEAAALAEDTSSVSSHGASSPback to top mRNA from alignment at L-elsbetiae_contig6970:2558..10389+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig6970.15748.1 ID=mRNA_L-elsbetiae_contig6970.15748.1|Name=mRNA_L-elsbetiae_contig6970.15748.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7832bp|location=Sequence derived from alignment at L-elsbetiae_contig6970:2558..10389+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig6970:2558..10389+ >mRNA_L-elsbetiae_contig6970.15748.1 ID=mRNA_L-elsbetiae_contig6970.15748.1|Name=mRNA_L-elsbetiae_contig6970.15748.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=5664bp|location=Sequence derived from alignment at L-elsbetiae_contig6970:2558..10389+ (Laminarionema elsbetiae ELsaHSoW15)back to top |