mRNA_L-elsbetiae_contig695.15722.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig695.15722.1
Unique NamemRNA_L-elsbetiae_contig695.15722.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig695.15722.1 vs. uniprot
Match: A0A6H5K438_9PHAE (Herpes_ori_bp domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K438_9PHAE)

HSP 1 Score: 258 bits (658), Expect = 5.290e-77
Identity = 131/189 (69.31%), Postives = 150/189 (79.37%), Query Frame = 1 
Query:    1 MIIMDEVRSMLNSAVCSETNNGHMQENMEKLQELIYLADRVICADADIHIDGAVQCFYDTVFKGEEIHHIDHKGGGQELHVKFADEAAFVRMIQQDLRAGKMIGVCCGSAQELKTLEKVALDILGKEEVGI*YANSPKQAEVADVAAYWPKYKFIGFTSTITVSVNY--------ITPSRRGCGPRDMN 543
            MIIMDE+RS LNSA                   LIY ADRVICADAD+++DGAVQCFYDTVFK EEIHHIDHKGGGQELHV+F D AAFV+MI +DLRAGK IGVCCGSA ELKT+EK+ALDI+ KE++GI YANSP+QAE+ADV+A+WPKYK IG TSTITVSV+Y        I+PS+RGCGPRDMN
Sbjct:  468 MIIMDELRSTLNSA-------------------LIYQADRVICADADLYVDGAVQCFYDTVFKNEEIHHIDHKGGGQELHVRFTDSAAFVKMILKDLRAGKRIGVCCGSALELKTIEKLALDIVHKEKLGIYYANSPQQAEIADVSAHWPKYKLIGLTSTITVSVDYTGPIDRVYISPSQRGCGPRDMN 637
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BLAST of mRNA_L-elsbetiae_contig695.15722.1 vs. uniprot
Match: D7FL23_ECTSI (Origin-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL23_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 1.650e-14
Identity = 52/155 (33.55%), Postives = 78/155 (50.32%), Query Frame = 1 
Query:   97 ELIYLADRVICADADIHIDGAVQCFYDTVFKGEEIHHIDHKGGGQELHVKFADEAAFVRMIQQDLRAGKMIGVCCGSAQELKTLEKVALDILGKEEVGI*YANSPKQAEVADVAAYWPKYKFIGFTSTITVSVN--------YITPSRRGCGPRD 537
            EL   A   I  DAD ++D AV  F D++F+ E++  I       E   KF  + A  + + QDLR G  +  C  SA+ L+   K     + +  V   +A +  + E+ DV  YW KYKF G+TST+TVS++        YI P++    PR+
Sbjct:   70 ELCTKAKHTILTDADSNLDCAVDLFRDSLFRPEDVKTIRLPEPFMERKFKFMSKPATFKKMCQDLRNGHRVVACVASAKMLRGCMKHLKTFMDESLVTGYFAAADNKDELFDVNQYWGKYKFTGYTSTVTVSLDFAEPVYRVYIFPNKHSFRPRE 224
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BLAST of mRNA_L-elsbetiae_contig695.15722.1 vs. uniprot
Match: A0A6H5J8T6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8T6_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 5.930e-11
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:  244 KFADEAAFVRMIQQDLRAGKMIGVCCGSAQELKTLEKVALDILGKEEVGI*YANSP 411
            +F  +AA  R IQQ+    K IG+C GSAQELKTLEK+AL I+G+E+VGI Y NSP
Sbjct:    3 RFKHDAAIARKIQQE---NKQIGMCRGSAQELKTLEKLALAIVGEEKVGIYYGNSP 55
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig695.15722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K438_9PHAE5.290e-7769.31Herpes_ori_bp domain-containing protein n=1 Tax=Ec... [more]
D7FL23_ECTSI1.650e-1433.55Origin-binding protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5J8T6_9PHAE5.930e-1160.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig695contigL-elsbetiae_contig695:17482..18026 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-23_001320.1
Exons1
Model size545
Cds size396
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816770.5026944-CDS-L-elsbetiae_contig695:17481..178771622816770.5026944-CDS-L-elsbetiae_contig695:17481..17877Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig695 17482..17877 +
1691683800.3805225-CDS-L-elsbetiae_contig695:17481..178771691683800.3805225-CDS-L-elsbetiae_contig695:17481..17877Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig695 17482..17877 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816770.513602-UTR-L-elsbetiae_contig695:17877..180261622816770.513602-UTR-L-elsbetiae_contig695:17877..18026Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig695 17878..18026 +
1691683800.3981004-UTR-L-elsbetiae_contig695:17877..180261691683800.3981004-UTR-L-elsbetiae_contig695:17877..18026Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig695 17878..18026 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig695.15722.1prot_L-elsbetiae_contig695.15722.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig695 17482..17877 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig695.15722.1

>prot_L-elsbetiae_contig695.15722.1 ID=prot_L-elsbetiae_contig695.15722.1|Name=mRNA_L-elsbetiae_contig695.15722.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=132bp
MIIMDEVRSMLNSAVCSETNNGHMQENMEKLQELIYLADRVICADADIHI
DGAVQCFYDTVFKGEEIHHIDHKGGGQELHVKFADEAAFVRMIQQDLRAG
KMIGVCCGSAQELKTLEKVALDILGKEEVGI*
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mRNA from alignment at L-elsbetiae_contig695:17482..18026+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig695.15722.1 ID=mRNA_L-elsbetiae_contig695.15722.1|Name=mRNA_L-elsbetiae_contig695.15722.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=545bp|location=Sequence derived from alignment at L-elsbetiae_contig695:17482..18026+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATCATCATGGACGAGGTACGATCGATGCTGAACTCGGCCGTGTGCAG
CGAAACGAACAACGGGCACATGCAGGAGAACATGGAGAAGCTTCAGGAAC
TGATCTACCTCGCGGACCGGGTTATCTGCGCCGACGCCGATATACATATC
GACGGAGCGGTCCAGTGCTTCTACGATACCGTGTTCAAGGGGGAAGAGAT
CCACCACATCGACCACAAGGGGGGAGGGCAAGAGCTTCACGTAAAATTCG
CAGACGAGGCGGCTTTCGTGCGCATGATTCAGCAAGATCTGCGCGCCGGC
AAGATGATCGGCGTTTGTTGCGGCTCGGCCCAGGAGCTCAAGACGCTCGA
GAAGGTGGCTCTGGATATCCTCGGTAAGGAGGAGGTGGGGATATAATACG
CCAACTCTCCAAAACAAGCCGAGGTTGCCGACGTGGCCGCCTACTGGCCA
AAGTACAAGTTCATCGGGTTTACATCGACCATCACGGTCAGCGTCAACTA
CATCACCCCGTCGAGGAGAGGATGCGGCCCGCGAGACATGAATCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig695:17482..18026+

>mRNA_L-elsbetiae_contig695.15722.1 ID=mRNA_L-elsbetiae_contig695.15722.1|Name=mRNA_L-elsbetiae_contig695.15722.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=792bp|location=Sequence derived from alignment at L-elsbetiae_contig695:17482..18026+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATCATCATGGACGAGGTACGATCGATGCTGAACTCGGCCGTGTGCAG
CGAAACGAACAACGGGCACATGCAGGAGAACATGGAGAAGCTTCAGGAAC
TGATCTACCTCGCGGACCGGGTTATCTGCGCCGACGCCGATATACATATC
GACGGAGCGGTCCAGTGCTTCTACGATACCGTGTTCAAGGGGGAAGAGAT
CCACCACATCGACCACAAGGGGGGAGGGCAAGAGCTTCACGTAAAATTCG
CAGACGAGGCGGCTTTCGTGCGCATGATTCAGCAAGATCTGCGCGCCGGC
AAGATGATCGGCGTTTGTTGCGGCTCGGCCCAGGAGCTCAAGACGCTCGA
GAAGGTGGCTCTGGATATCCTCGGTAAGGAGGAGGTGGGGATATAAATGA
TCATCATGGACGAGGTACGATCGATGCTGAACTCGGCCGTGTGCAGCGAA
ACGAACAACGGGCACATGCAGGAGAACATGGAGAAGCTTCAGGAACTGAT
CTACCTCGCGGACCGGGTTATCTGCGCCGACGCCGATATACATATCGACG
GAGCGGTCCAGTGCTTCTACGATACCGTGTTCAAGGGGGAAGAGATCCAC
CACATCGACCACAAGGGGGGAGGGCAAGAGCTTCACGTAAAATTCGCAGA
CGAGGCGGCTTTCGTGCGCATGATTCAGCAAGATCTGCGCGCCGGCAAGA
TGATCGGCGTTTGTTGCGGCTCGGCCCAGGAGCTCAAGACGCTCGAGAAG
GTGGCTCTGGATATCCTCGGTAAGGAGGAGGTGGGGATATAA
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