mRNA_L-elsbetiae_contig6928.15699.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6928.15699.1
Unique NamemRNA_L-elsbetiae_contig6928.15699.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig6928.15699.1 vs. uniprot
Match: D7G4M1_ECTSI (Smc-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4M1_ECTSI)

HSP 1 Score: 202 bits (515), Expect = 4.270e-53
Identity = 99/130 (76.15%), Postives = 110/130 (84.62%), Query Frame = 1 
Query: 1015 RKRKGKNEDDPWPGVVLKIEVSNFMCHRRFSIPLRKRVNFITGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRHGWKGDAVVEVTVLNSIGGFKFDEYGDSITVRRTIRPNGSSGFELLGHDRKV 1404
            +KRK K E  P  GVVLK+ VSNFMCHR+ S+PL K VNFI GRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRHGWKGDAV+EVT+LN+  GF F+EYG+SIT+RRTI+     GF LLGHDRKV
Sbjct:   72 KKRKRKTEQ-PEAGVVLKVHVSNFMCHRKLSVPLCKHVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRHGWKGDAVLEVTLLNTEHGFMFEEYGESITIRRTIKQPSGGGFALLGHDRKV 200
[Close]
BLAST of mRNA_L-elsbetiae_contig6928.15699.1 vs. uniprot
Match: D7G4M2_ECTSI (Smc-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4M2_ECTSI)

HSP 1 Score: 186 bits (473), Expect = 1.540e-47
Identity = 88/117 (75.21%), Postives = 100/117 (85.47%), Query Frame = 1 
Query: 1054 GVVLKIEVSNFMCHRRFSIPLRKRVNFITGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRHGWKGDAVVEVTVLNSIGGFKFDEYGDSITVRRTIRPNGSSGFELLGHDRKV 1404
            GVVLKI VSNFMCHR+ ++PL K+VNFI GRNGSGKSAILAALQICLGAKAHLTHRAKKM DFIRHGWKGDAV+EVT+LN+  GF F+EYG+SIT+RRTI+     GF L+G D  V
Sbjct:  177 GVVLKINVSNFMCHRKLTVPLCKQVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMTDFIRHGWKGDAVLEVTLLNTEHGFMFEEYGESITIRRTIKQPSGGGFALVGADGAV 293
[Close]
BLAST of mRNA_L-elsbetiae_contig6928.15699.1 vs. uniprot
Match: A0A836CML4_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CML4_9STRA)

HSP 1 Score: 156 bits (394), Expect = 3.160e-37
Identity = 74/117 (63.25%), Postives = 88/117 (75.21%), Query Frame = 1 
Query: 1054 GVVLKIEVSNFMCHRRFSIPLRKRVNFITGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRHGWKGDAVVEVTVLNSIGGFKFDEYGDSITVRRTIRPNGSSGFELLGHDRKV 1404
            GV+L+I+V NFMCHR  ++ L + +NFI G NGSGKSAILAALQICLGA+A +THRA K+ D IRHGW GDA VEV +LN+  G KFD YG SITVRR I+   S+  ELL HD  V
Sbjct:   75 GVILRIDVKNFMCHRHLTVDLCRNINFINGSNGSGKSAILAALQICLGARARVTHRAHKLEDLIRHGWGGDAEVEVKMLNTPDGHKFDVYGQSITVRRVIKRGASAVVELLSHDGTV 191
[Close]
BLAST of mRNA_L-elsbetiae_contig6928.15699.1 vs. uniprot
Match: A0A7S1FSU6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FSU6_9STRA)

HSP 1 Score: 130 bits (327), Expect = 1.110e-28
Identity = 62/118 (52.54%), Postives = 82/118 (69.49%), Query Frame = 1 
Query: 1054 GVVLKIEVSNFMCHRRFSIPLRKRVNFITGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRHGWKGDAVVEVTVLN-SIGGFKFDEYGDSITVRRTIRPNGSSGFELLGHDRKV 1404
            G++ ++ V NFMCH++ +I L + VNFI G+NGSGKSA+LAA+QICLGA A  THRA+ + D IR GW G +VV+V +LN     ++ D YGD +TV RTI  NGS G+ LL     V
Sbjct:  100 GIIHRVYVENFMCHKKMTIDLCRNVNFIHGQNGSGKSAVLAAVQICLGAGARRTHRARNLKDLIRKGWGGKSVVKVRLLNRGDDAYEHDLYGDYVTVERTIERNGSGGYRLLDEHEAV 217
[Close]
BLAST of mRNA_L-elsbetiae_contig6928.15699.1 vs. uniprot
Match: D0NBA3_PHYIT (Structural maintenance of chromosomes protein, putative n=3 Tax=Phytophthora infestans TaxID=4787 RepID=D0NBA3_PHYIT)

HSP 1 Score: 120 bits (302), Expect = 9.270e-28
Identity = 60/117 (51.28%), Postives = 75/117 (64.10%), Query Frame = 1 
Query: 1045 PWPGVVLKIEVSNFMCHRRFSIPLRKRVNFITGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRHGWKGDAVVEVTVLNSIGG----FKFDEYGDSITVRRTIRPNGSSGFEL 1383
            P  GV+ +I   NFMCHR+  + L   +NFITG NGSGKSAI+AA+QIC GA A  THR K +  FIRHG  G+A V VT+ N  G     F+ D+YG  I V R IR +GS+ + L
Sbjct:   74 PEMGVIEEIYCENFMCHRKLRVTLSPHINFITGENGSGKSAIIAAIQICFGASARTTHRGKNIKSFIRHGCDGNAFVRVTLRNDDGAGSDAFQADKYGKKIIVERLIRRDGSAEYRL 190
[Close]
BLAST of mRNA_L-elsbetiae_contig6928.15699.1 vs. uniprot
Match: W7U0X2_9STRA (Structural maintenance of chromosomes 6 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U0X2_9STRA)

HSP 1 Score: 124 bits (312), Expect = 1.160e-26
Identity = 63/113 (55.75%), Postives = 82/113 (72.57%), Query Frame = 1 
Query: 1054 GVVLKIEVSNFMCHRRFSIPLRKRVNFITGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRHGWKGDAVVEVTVLNS-IGGFKFDEYGDSITVRRTIRPNGSS-GFELL 1386
            GV++KI   NFMCHR+ SI L   VNFI G+NGSGKSAILAALQICLGA+A++THR  +++D IR G  G A+V V++LN     +++D+YGD ITV R I  + S  G+ LL
Sbjct:  148 GVIVKIYCENFMCHRKLSINLCPNVNFIHGQNGSGKSAILAALQICLGARANVTHRGARLSDMIRQGHDGHAIVRVSLLNKGPDAYEYDKYGDYITVERRIERHASGCGYRLL 260
[Close]
BLAST of mRNA_L-elsbetiae_contig6928.15699.1 vs. uniprot
Match: A0A1V9ZWG2_9STRA (Structural maintenance of chromosomes protein 6 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZWG2_9STRA)

HSP 1 Score: 122 bits (306), Expect = 6.420e-26
Identity = 61/120 (50.83%), Postives = 79/120 (65.83%), Query Frame = 1 
Query: 1054 GVVLKIEVSNFMCHRRFSIPLRKRVNFITGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRHGWKGDAVVEVTVLNSIGG---FKFDEYGDSITVRRTIRPNGSSGFELLGHDRKV 1404
            G++ +I   NFMCHRR SI L   +NFITG NGSGKSAI+AALQICLGA A  THR K + + IRHG  G+A+V +T+LN   G   F+ + +G  I V R IR +G++ + L     KV
Sbjct:   42 GIIQEIYCENFMCHRRMSIQLCPNINFITGENGSGKSAIIAALQICLGASARATHRGKSIKNLIRHGHDGNALVRITLLNDASGTDAFRPETFGRIIQVERLIRRDGTAEYRLKDEHGKV 161
[Close]
BLAST of mRNA_L-elsbetiae_contig6928.15699.1 vs. uniprot
Match: A0A2R5G690_9STRA (Structural maintenance of chromosomes protein 6 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G690_9STRA)

HSP 1 Score: 121 bits (304), Expect = 1.190e-25
Identity = 60/117 (51.28%), Postives = 78/117 (66.67%), Query Frame = 1 
Query: 1054 GVVLKIEVSNFMCHRRFSIPLRKRVNFITGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRHGWKGDAVVEVTVLNS-IGGFKFDEYGDSITVRRTIRPNGSSGFELLGHDRK 1401
            G V KIE +NFMCHRR  + L + +NFITG+NGSGKSAI+AALQICLG  A  T R  K+++ IRHG   DA+V V +LN     +K D YG  I + R ++P+G+S F +L    K
Sbjct:   90 GKVKKIECTNFMCHRRLEVNLGRHINFITGQNGSGKSAIVAALQICLGLSARNTKRGSKLSNLIRHGSNADAIVAVELLNEGPTAYKPDLYGPVIRIERVLKPSGTSSFRILNAKTK 206
[Close]
BLAST of mRNA_L-elsbetiae_contig6928.15699.1 vs. uniprot
Match: A0A6A3STL2_9STRA (AAA_23 domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3STL2_9STRA)

HSP 1 Score: 118 bits (296), Expect = 2.590e-25
Identity = 59/115 (51.30%), Postives = 76/115 (66.09%), Query Frame = 1 
Query: 1054 GVVLKIEVSNFMCHRRFSIPLRKRVNFITGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRHGWKGDAVVEVTVLNSIGG---FKFDEYGDSITVRRTIRPNGSSGFELLG 1389
            GVV +I   NFMCHR+  + L   VNFITG NGSGKSAI+AALQ+C G+ AH THR K +   IRHG+ G+A+V VT+ N   G   F+ +++G  I V R IR +GS  + L G
Sbjct:   70 GVVEEIYCENFMCHRKLRVTLSPHVNFITGENGSGKSAIIAALQVCFGSSAHSTHRGKSLKSLIRHGFDGNALVRVTLRNDDVGSDAFRPEKFGRKIIVERVIRRDGSGEYCLRG 184
[Close]
BLAST of mRNA_L-elsbetiae_contig6928.15699.1 vs. uniprot
Match: A0A8K1CAM0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CAM0_PYTOL)

HSP 1 Score: 120 bits (301), Expect = 2.820e-25
Identity = 55/113 (48.67%), Postives = 78/113 (69.03%), Query Frame = 1 
Query: 1054 GVVLKIEVSNFMCHRRFSIPLRKRVNFITGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRHGWKGDAVVEVTVLNSIGG---FKFDEYGDSITVRRTIRPNGSSGFEL 1383
            G++ +I   NFMCHR+  + L   +NFITG NGSGKSAI+AA+QICLGA A  THR K + + IRHG++G+A+V +T+ N   G   F+ +++G  I V R IR +GS+ + L
Sbjct:   74 GIIEEIYCENFMCHRKLRVQLSPHINFITGENGSGKSAIIAAIQICLGASARSTHRGKSIKNLIRHGYEGNALVRITLRNDASGSDAFRAEQFGKKILVERLIRRDGSAEYRL 186
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6928.15699.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4M1_ECTSI4.270e-5376.15Smc-like protein n=1 Tax=Ectocarpus siliculosus Ta... [more]
D7G4M2_ECTSI1.540e-4775.21Smc-like protein n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
A0A836CML4_9STRA3.160e-3763.25P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S1FSU6_9STRA1.110e-2852.54Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
D0NBA3_PHYIT9.270e-2851.28Structural maintenance of chromosomes protein, put... [more]
W7U0X2_9STRA1.160e-2655.75Structural maintenance of chromosomes 6 n=2 Tax=Mo... [more]
A0A1V9ZWG2_9STRA6.420e-2650.83Structural maintenance of chromosomes protein 6 n=... [more]
A0A2R5G690_9STRA1.190e-2551.28Structural maintenance of chromosomes protein 6 n=... [more]
A0A6A3STL2_9STRA2.590e-2551.30AAA_23 domain-containing protein n=2 Tax=Phytophth... [more]
A0A8K1CAM0_PYTOL2.820e-2548.67Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6928contigL-elsbetiae_contig6928:1289..5274 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score204.5
Seed ortholog evalue1.1e-49
Seed eggNOG ortholog2880.D7G4M1
Preferred nameSMC6
KEGG koko:K12614,ko:K15014
KEGG TC2.A.57.1
KEGG Pathwayko03018,map03018
KEGG ModuleM00395
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000781,GO:0000793,GO:0000794,GO:0000803,GO:0001674,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003697,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007568,GO:0007569,GO:0008094,GO:0008150,GO:0008152,GO:0009410,GO:0009987,GO:0010033,GO:0010243,GO:0014070,GO:0014074,GO:0016043,GO:0016462,GO:0016604,GO:0016605,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019899,GO:0022402,GO:0030915,GO:0031000,GO:0031625,GO:0031974,GO:0031981,GO:0032200,GO:0032502,GO:0032991,GO:0033554,GO:0033676,GO:0034641,GO:0035061,GO:0035861,GO:0036270,GO:0042221,GO:0042493,GO:0042585,GO:0042592,GO:0042623,GO:0043073,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043279,GO:0044237,GO:0044238,GO:0044260,GO:0044389,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0048518,GO:0048522,GO:0048869,GO:0050000,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051276,GO:0051304,GO:0051640,GO:0051641,GO:0051716,GO:0051983,GO:0051984,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0071139,GO:0071704,GO:0071840,GO:0090304,GO:0090398,GO:0090734,GO:0097159,GO:0097240,GO:0098687,GO:0106068,GO:1901360,GO:1901363,GO:1901698,GO:1902494,GO:1990234,GO:1990683
EggNOG free text desc.double-strand break repair via homologous recombination
EggNOG OGsCOG1196@1,KOG0250@2759
EC3.6.4.13
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko02000,ko03019,ko03036
Exons7
Model size1409
Cds size1407
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816768.1727688-CDS-L-elsbetiae_contig6928:1288..14481622816768.1727688-CDS-L-elsbetiae_contig6928:1288..1448Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6928 1289..1448 -
1691683798.4735787-CDS-L-elsbetiae_contig6928:1288..14481691683798.4735787-CDS-L-elsbetiae_contig6928:1288..1448Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6928 1289..1448 -
1622816768.1837332-CDS-L-elsbetiae_contig6928:1693..18191622816768.1837332-CDS-L-elsbetiae_contig6928:1693..1819Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6928 1694..1819 -
1691683798.4899282-CDS-L-elsbetiae_contig6928:1693..18191691683798.4899282-CDS-L-elsbetiae_contig6928:1693..1819Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6928 1694..1819 -
1622816768.1955612-CDS-L-elsbetiae_contig6928:2247..23681622816768.1955612-CDS-L-elsbetiae_contig6928:2247..2368Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6928 2248..2368 -
1691683798.5072443-CDS-L-elsbetiae_contig6928:2247..23681691683798.5072443-CDS-L-elsbetiae_contig6928:2247..2368Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6928 2248..2368 -
1622816768.2049656-CDS-L-elsbetiae_contig6928:2823..29301622816768.2049656-CDS-L-elsbetiae_contig6928:2823..2930Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6928 2824..2930 -
1691683798.5198107-CDS-L-elsbetiae_contig6928:2823..29301691683798.5198107-CDS-L-elsbetiae_contig6928:2823..2930Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6928 2824..2930 -
1622816768.2160907-CDS-L-elsbetiae_contig6928:3422..36471622816768.2160907-CDS-L-elsbetiae_contig6928:3422..3647Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6928 3423..3647 -
1691683798.5339355-CDS-L-elsbetiae_contig6928:3422..36471691683798.5339355-CDS-L-elsbetiae_contig6928:3422..3647Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6928 3423..3647 -
1622816768.2291505-CDS-L-elsbetiae_contig6928:4088..44101622816768.2291505-CDS-L-elsbetiae_contig6928:4088..4410Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6928 4089..4410 -
1691683798.552972-CDS-L-elsbetiae_contig6928:4088..44101691683798.552972-CDS-L-elsbetiae_contig6928:4088..4410Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6928 4089..4410 -
1622816768.2427137-CDS-L-elsbetiae_contig6928:4928..52741622816768.2427137-CDS-L-elsbetiae_contig6928:4928..5274Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6928 4929..5274 -
1691683798.5654352-CDS-L-elsbetiae_contig6928:4928..52741691683798.5654352-CDS-L-elsbetiae_contig6928:4928..5274Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6928 4929..5274 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6928.15699.1prot_L-elsbetiae_contig6928.15699.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6928 1289..5274 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6928.15699.1

>prot_L-elsbetiae_contig6928.15699.1 ID=prot_L-elsbetiae_contig6928.15699.1|Name=mRNA_L-elsbetiae_contig6928.15699.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=469bp
RNTERPRKAQRLSSGSVDEELSSGGSADGSVDGSLDGSPETDRESFSAAT
PALVETPPTPAATAAVAAATIAAAAASTYPAAAVAAPAPSPAASPATDDD
EMEEDDDDDDEVQPQAPKGKGKRAAIPGGDDSGPELQEEEEGEETDDDDD
VQVVGPPAPPAPIASHDEEEEEEQEEEGDSDVENVDPPALPVPLANHDQR
DQRDQHDQHHHEDRGDDDREDIRLAIADGVEGGSVEGEQEDPGEGDLNGA
VSNATATASNGDGEETEEEKEQEEGTAEAEGGAEEVVQGGESSEECRSSN
TDAQSGGEGSGAGGVSAVAAATEENQEISSGFSGGKSSRKRKGKNEDDPW
PGVVLKIEVSNFMCHRRFSIPLRKRVNFITGRNGSGKSAILAALQICLGA
KAHLTHRAKKMADFIRHGWKGDAVVEVTVLNSIGGFKFDEYGDSITVRRT
IRPNGSSGFELLGHDRKV*
back to top

mRNA from alignment at L-elsbetiae_contig6928:1289..5274-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6928.15699.1 ID=mRNA_L-elsbetiae_contig6928.15699.1|Name=mRNA_L-elsbetiae_contig6928.15699.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3986bp|location=Sequence derived from alignment at L-elsbetiae_contig6928:1289..5274- (Laminarionema elsbetiae ELsaHSoW15)
CGAAATACGGAACGCCCACGGAAGGCTCAGCGACTCTCCAGCGGATCTGT
TGACGAGGAATTAAGTAGCGGGGGATCTGCCGACGGGTCTGTCGACGGGT
CTCTCGATGGGTCTCCAGAGACTGACCGGGAAAGTTTTTCCGCGGCAACA
CCTGCATTAGTAGAAACACCACCGACGCCAGCAGCAACCGCAGCCGTAGC
CGCAGCAACGATAGCAGCAGCAGCAGCGTCTACTTATCCAGCTGCCGCCG
TAGCAGCACCAGCGCCCTCCCCGGCAGCAAGCCCCGCGACTGATGATGAT
GAGATGGAGGAGGACGACGACGACGATGATGAAGTCCAACCGCAAGGTAA
ACAACGTAGCTACGTTGCCCATACATATGTCGACCCCCATAATTTGAAAT
ATTCGACGAGGTAAGTTTAAGCCTAGTCTGCATGCATGAAATCCGTTCCT
GTTTTCCTTGCCTTTCGTTCTTAAATTACATACGAATGCAATGCACTTCG
GTTCGTACGCAATTCGTATCGATGTGTCGACGACACCCGTCTCTTCTACG
ACTCTTTGTTCTATTTTCCCATATTTCAGGCGTTGAGGGGCCGGAAGCAC
ATGGGTGTTGTAGGTAGAGTACGCCCAGAAAAAAGAGGATGTATGGCGCG
GGCAGGGTTGAGTAGTTCGGCAGGTTTAGTTAACCCGCGAACCAGAGGTT
GAAGCGGCAGCAGACGGATATTGTCACTGGCGGTTGTGTTTCGCACAGAG
AAACGTGGGCATGTGCGGTGCGCGGACCTTGGTCTGATGGTAAACTACTG
TTTGCTTGTTCGATAACGTATTACCTTGCCGTTCGGCGGCGATGGCGGAC
GCGTACCGAGGCAGCTCCGAAGGGCAAGGGGAAGCGCGCGGCCATCCCCG
GCGGCGACGACAGCGGCCCAGAACTGCAGGAGGAAGAGGAGGGCGAGGAG
ACTGATGATGACGACGACGTGCAGGTTGTTGGTCCGCCTGCCCCGCCTGC
ACCCATTGCTAGCCACGATGAAGAGGAAGAGGAAGAGCAAGAAGAGGAGG
GCGATAGCGACGTGGAAAACGTGGACCCGCCAGCACTGCCGGTGCCCCTG
GCCAACCATGATCAGCGTGATCAGCGTGATCAACATGATCAGCATCACCA
CGAGGACAGAGGCGACGATGACCGGGAGGATATTAGGTGACTAAATAGTC
TGCATAGAATATCAGCTGCTTTTCGTTTTTGCTGCATTCACGGTTTCGGG
AACAGAATGATTTGCCGGGTATGTAAGGTGACGTATCTTGTCGTGGGTGA
CGTCAGCAGTGATGCCGCAAACCTAAATGGGGTGGTTTGACACGTGGATG
TGGGTGTGGGAGGCGATCTTCTATAGCCATTGTCCGCTATATCCAAGTCG
CACATATTCTTTGACCCACGTCAGTCTCTTCTTGGTCTCCCCTCGGTTCT
CATTCCAGACCTCTCTTTGAGCTGTAGTACACAGAGAGAGACACACACAG
AGAGAGAGAGAGTCGCGCACTGTTCCGTAGTGTCGTTGCGCAGAATCGGC
AGCCACACGGAAAATACTAGCCATCCCAAGAACGACGGCTGGTCTGCCTC
GTTCTCGGCCCTGTTTGTCGCGAACAGGCTTGCGATAGCGGATGGCGTTG
AAGGTGGAAGCGTGGAAGGGGAGCAAGAAGATCCAGGCGAAGGCGACCTC
AACGGGGCTGTCAGTAACGCAACTGCCACTGCCAGTAACGGGGACGGAGA
AGAGACGGAGGAAGAGAAAGAGCAGGAGGAAGGAACCGCGGAGGCAGAGG
GGGGAGCAGAGGAGGTCGTGCAGGGGGGAGAGAGCAGCGAGGAATGTCGA
AGGTGAGGCTGGACGTAAAAAAAAAACACCGCTGCCGGTGACCACCATGG
GCGCTTTGAAAAGGGTGTTGACCCGGTTTTGAAAACTCGGAGTGTGGTCT
TGGTGTTGGCAAATACATATATTTGGAGAAATGCTGGTGGGAGGCGAAGC
CACAGAGCTACAAAGCGAGGTTGGTATAGTTTATGGCTAGTGCACGTGCG
CTCCGGGTGGTACCGGGGGGTTACGTGAATACGAAGGCGTCTCATTTACT
GCTGTGTCAGAAGGAGGAAGACCAGCAGTAGCTGCATTCGCATAAAAGGT
TTGAAGGGGGGTAAAGGTTAACAAGGAGGCCAAACGGGCAGCATACACGG
GGCTTCCTTTCCTTTTCTATCTCCCCTCGGGGTAAGTAGTCGACAGAGCT
GCTGCTTTCATGATTGTCTCTTGCCTTGCGGGATATGTATGTACGTACAC
GATGCTTATCCCCACCATGCCGCCTTCCCGCACGATTTGAGTAGCAGCAA
CACGGACGCGCAGAGTGGCGGAGAGGGGTCTGGCGCAGGAGGGGTCTCTG
CTGTCGCTGCGGCTACGGAGGAGAACCAGGAAATATCGTCGGGTTTTTCC
GGTGCGTGAGGCGAAAGCAGCAGCGGTGCAATCGTCACAGACATAAATAT
AGCAGTATCTGCAACGTTGACCTTCACACTGCAGCCTCTTTTGTGTTCTC
TCGAAGCTGCGGTAAGTATCGTGGACGGTAACCTACCCTTCCGCGTGAAG
GTACTTTGTTTATTTTCAGGTGCGATTTCATGTGCAGCAGCGGGGGAAAT
GGACTGCAGCGCCGAGCGGTATTTAATTTATGTCAATCAAATCAGACGAA
GGGCATATCAAACCATTGTTATCTCACACCGCGGTGGTGGTGATGCTCGT
GCTGAGAGAGGGGGCAGGTGTAAACGGATGGCATGTTACTGCTGTAGCGC
GCTTGTGGGGTTAGGGGCTGGTGCGACCGACGGTTTTGCACCAGCGGCTT
CTACTGTTGTAACAGGCGTGTTTATTTCCTTGCACACACGAATGCACATC
GTGCAGGCGGGAAGAGCAGCAGGAAGAGGAAAGGCAAGAACGAGGATGAT
CCATGGCCCGGGGTGGTGCTCAAGATCGAGGTTTCCAACTTCATGTGCCA
CAGACGGTTCTCGATCCCCCTGCGCAAGTGAGAAGAAAATTGTATTGCAC
GACAGCCGCTCCCTTCTTGTTTCGTGGTATCTGTATGGGTCGGAGTTAGG
TTCACCGGCAGCGCAAAACAAAGGTTGAAGCACGAGCATGTACTTGCCAT
CAAGTGGCGTGTGTGAGTGGTGTATATGTGTGTACAATAGATTTGTCAGT
TCCTTACTCCCCAAATAGCCGAAAATAGAATGTGGAGCGGAATGAAAGTG
TAGATATTTAGACGTGACACTCCCGTCGTGCAAACGTTGATACCAGCTTT
ATATCTCAGTAGTAGCTTTCATTTCGGGAGATGCTTGTTTAGCCAGGTAG
GTATTCCTGCTGTACATAGCGTTAAATTTAAAGGAGGTCGGCGTGTTTTT
TACATGTTCACACGGCTGGCTGTCCTGCATGCGCTTGTGTCGTCCATTTG
CACAGGCGGGTCAACTTCATCACCGGGCGGAACGGTTCTGGCAAATCCGC
CATCCTGGCCGCACTCCAGATCTGCCTCGGAGCCAAGGCGCACCTCACGC
ACAGGGCCAAGAAGATGGCCGACTTTATCAGGCGGGTTTGCTTTTGTTTT
TAGCGAAGTGGGCCATTTCACTGCTTCATCCGGTCCATGTTGTTTTTTTT
GTTTTGGGTTTTGCTTAACCCGCACAAGGGTGGGGTGTTATGCGCACGGT
GTTGCAGTTGATATCCCATACTCTACTACCCTGCACGGATACGTCTGTGT
CTCGATCCTTGGCTGCATGGTTCGAACGAAGGGCCATGCTAAATATCACA
TTTTGGTATCACCGTATTGCTTGCAGGCACGGGTGGAAGGGAGATGCCGT
CGTGGAGGTGACCGTGTTGAACAGTATTGGCGGCTTCAAGTTCGATGAGT
ATGGCGACTCCATCACGGTCAGGAGGACCATCAGGCCGAACGGGAGTAGT
GGGTTTGAGCTGCTGGGCCACGACAGGAAGGTGTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6928:1289..5274-

>mRNA_L-elsbetiae_contig6928.15699.1 ID=mRNA_L-elsbetiae_contig6928.15699.1|Name=mRNA_L-elsbetiae_contig6928.15699.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2814bp|location=Sequence derived from alignment at L-elsbetiae_contig6928:1289..5274- (Laminarionema elsbetiae ELsaHSoW15)
CGAAATACGGAACGCCCACGGAAGGCTCAGCGACTCTCCAGCGGATCTGT
TGACGAGGAATTAAGTAGCGGGGGATCTGCCGACGGGTCTGTCGACGGGT
CTCTCGATGGGTCTCCAGAGACTGACCGGGAAAGTTTTTCCGCGGCAACA
CCTGCATTAGTAGAAACACCACCGACGCCAGCAGCAACCGCAGCCGTAGC
CGCAGCAACGATAGCAGCAGCAGCAGCGTCTACTTATCCAGCTGCCGCCG
TAGCAGCACCAGCGCCCTCCCCGGCAGCAAGCCCCGCGACTGATGATGAT
GAGATGGAGGAGGACGACGACGACGATGATGAAGTCCAACCGCAAGCGAA
ATACGGAACGCCCACGGAAGGCTCAGCGACTCTCCAGCGGATCTGTTGAC
GAGGAATTAAGTAGCGGGGGATCTGCCGACGGGTCTGTCGACGGGTCTCT
CGATGGGTCTCCAGAGACTGACCGGGAAAGTTTTTCCGCGGCAACACCTG
CATTAGTAGAAACACCACCGACGCCAGCAGCAACCGCAGCCGTAGCCGCA
GCAACGATAGCAGCAGCAGCAGCGTCTACTTATCCAGCTGCCGCCGTAGC
AGCACCAGCGCCCTCCCCGGCAGCAAGCCCCGCGACTGATGATGATGAGA
TGGAGGAGGACGACGACGACGATGATGAAGTCCAACCGCAAGCTCCGAAG
GGCAAGGGGAAGCGCGCGGCCATCCCCGGCGGCGACGACAGCGGCCCAGA
ACTGCAGGAGGAAGAGGAGGGCGAGGAGACTGATGATGACGACGACGTGC
AGGTTGTTGGTCCGCCTGCCCCGCCTGCACCCATTGCTAGCCACGATGAA
GAGGAAGAGGAAGAGCAAGAAGAGGAGGGCGATAGCGACGTGGAAAACGT
GGACCCGCCAGCACTGCCGGTGCCCCTGGCCAACCATGATCAGCGTGATC
AGCGTGATCAACATGATCAGCATCACCACGAGGACAGAGGCGACGATGAC
CGGGAGGATATTAGCTCCGAAGGGCAAGGGGAAGCGCGCGGCCATCCCCG
GCGGCGACGACAGCGGCCCAGAACTGCAGGAGGAAGAGGAGGGCGAGGAG
ACTGATGATGACGACGACGTGCAGGTTGTTGGTCCGCCTGCCCCGCCTGC
ACCCATTGCTAGCCACGATGAAGAGGAAGAGGAAGAGCAAGAAGAGGAGG
GCGATAGCGACGTGGAAAACGTGGACCCGCCAGCACTGCCGGTGCCCCTG
GCCAACCATGATCAGCGTGATCAGCGTGATCAACATGATCAGCATCACCA
CGAGGACAGAGGCGACGATGACCGGGAGGATATTAGGCTTGCGATAGCGG
ATGGCGTTGAAGGTGGAAGCGTGGAAGGGGAGCAAGAAGATCCAGGCGAA
GGCGACCTCAACGGGGCTGTCAGTAACGCAACTGCCACTGCCAGTAACGG
GGACGGAGAAGAGACGGAGGAAGAGAAAGAGCAGGAGGAAGGAACCGCGG
AGGCAGAGGGGGGAGCAGAGGAGGTCGTGCAGGGGGGAGAGAGCAGCGAG
GAATGTCGAAGGCTTGCGATAGCGGATGGCGTTGAAGGTGGAAGCGTGGA
AGGGGAGCAAGAAGATCCAGGCGAAGGCGACCTCAACGGGGCTGTCAGTA
ACGCAACTGCCACTGCCAGTAACGGGGACGGAGAAGAGACGGAGGAAGAG
AAAGAGCAGGAGGAAGGAACCGCGGAGGCAGAGGGGGGAGCAGAGGAGGT
CGTGCAGGGGGGAGAGAGCAGCGAGGAATGTCGAAGCAGCAACACGGACG
CGCAGAGTGGCGGAGAGGGGTCTGGCGCAGGAGGGGTCTCTGCTGTCGCT
GCGGCTACGGAGGAGAACCAGGAAATATCGTCGGGTTTTTCCGCAGCAAC
ACGGACGCGCAGAGTGGCGGAGAGGGGTCTGGCGCAGGAGGGGTCTCTGC
TGTCGCTGCGGCTACGGAGGAGAACCAGGAAATATCGTCGGGTTTTTCCG
GCGGGAAGAGCAGCAGGAAGAGGAAAGGCAAGAACGAGGATGATCCATGG
CCCGGGGTGGTGCTCAAGATCGAGGTTTCCAACTTCATGTGCCACAGACG
GTTCTCGATCCCCCTGCGCAAGCGGGAAGAGCAGCAGGAAGAGGAAAGGC
AAGAACGAGGATGATCCATGGCCCGGGGTGGTGCTCAAGATCGAGGTTTC
CAACTTCATGTGCCACAGACGGTTCTCGATCCCCCTGCGCAAGCGGGTCA
ACTTCATCACCGGGCGGAACGGTTCTGGCAAATCCGCCATCCTGGCCGCA
CTCCAGATCTGCCTCGGAGCCAAGGCGCACCTCACGCACAGGGCCAAGAA
GATGGCCGACTTTATCAGGCGGGTCAACTTCATCACCGGGCGGAACGGTT
CTGGCAAATCCGCCATCCTGGCCGCACTCCAGATCTGCCTCGGAGCCAAG
GCGCACCTCACGCACAGGGCCAAGAAGATGGCCGACTTTATCAGGCACGG
GTGGAAGGGAGATGCCGTCGTGGAGGTGACCGTGTTGAACAGTATTGGCG
GCTTCAAGTTCGATGAGTATGGCGACTCCATCACGGTCAGGAGGACCATC
AGGCCGAACGGGAGTAGTGGGTTTGAGCTGCTGGGCCACGACAGGAAGGT
GTGAGCACGGGTGGAAGGGAGATGCCGTCGTGGAGGTGACCGTGTTGAAC
AGTATTGGCGGCTTCAAGTTCGATGAGTATGGCGACTCCATCACGGTCAG
GAGGACCATCAGGCCGAACGGGAGTAGTGGGTTTGAGCTGCTGGGCCACG
ACAGGAAGGTGTGA
back to top