mRNA_L-elsbetiae_contig6922.15693.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6922.15693.1
Unique NamemRNA_L-elsbetiae_contig6922.15693.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6922.15693.1 vs. uniprot
Match: A0A6H5K8J3_9PHAE (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8J3_9PHAE)

HSP 1 Score: 199 bits (506), Expect = 2.440e-52
Identity = 119/213 (55.87%), Postives = 140/213 (65.73%), Query Frame = 1 
Query:   10 AGGFRTMADAAQVVRRVTGRADCDVIPVDSGYGTPPALEGQSCLYVLRYSSLLDGDRGD-------RGAGGRRHPSAEALLPPT--GYGDYYAXXXXXXXXPAIGEEDARASSSLSSSPSAPEGEEAGVWFYVGESDAIRDRLKRHARRWGGG----------GKAYKLDAVVVAAENRSEARRLETAVIRAMKEEGFHLVSDKDGSRTHFSS 591
            AGGF+TM DA QVV RV  R D D+I V+SGYGTPP LEG+SCLYVLRYS+LL    G+        G G  R PS+EA++     G+    A          +G+  +    +        E EEAGVWFYVGESD+IR+RLKRHA+RWG G           +A+KLDAVVV  ENRSEARRLETA+IRAMK+EGFHLVSDKDGSRTHFSS
Sbjct:  782 AGGFKTMKDATQVVCRVADRPDRDLISVESGYGTPPTLEGRSCLYVLRYSALLGSGGGNGASXXXXEGPGVGREPSSEAVVAEGVGGHAHGEARTLSGGGETEVGKPCSPNEGTGKGKEEEGE-EEAGVWFYVGESDSIRERLKRHAKRWGDGRXXXXXXXXXARAFKLDAVVVPVENRSEARRLETALIRAMKDEGFHLVSDKDGSRTHFSS 993
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BLAST of mRNA_L-elsbetiae_contig6922.15693.1 vs. uniprot
Match: D7FNS6_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNS6_ECTSI)

HSP 1 Score: 182 bits (461), Expect = 1.500e-51
Identity = 119/206 (57.77%), Postives = 133/206 (64.56%), Query Frame = 1 
Query:   28 MADAAQVVRRVTGRADCDVIPVDSGYGTPPALEGQSCLYVLRYSSLLDGDRG-------DRGAGGRRHPSAEALLPPTGYGDYYAXXXXXXXXPAIGEEDARASSSLSSSPSAPEG---EEAGVWFYVGESDAIRDRLKRHARRWGGG--------GKAYKLDAVVVAAENRSEARRLETAVIRAMKEEGFHLVSDKDGSRTHFSS 591
            M DA QVV RV  R   D+I V+SGYGTPPALEG+SCLYVLRYS+LL G          D G G  R PS+EA++   G      XXXXXXXX                          EEAGVWFYVGESD IR+RLKRHA+RWG G         +++KLDAVVV  ENRSEARRLETA+IRAMK+EGFHLVSDKDGSRTHFSS
Sbjct:    1 MKDATQVVCRVADRPHRDLISVESGYGTPPALEGRSCLYVLRYSALLGGXXXXXXXXXXDEGRGVGREPSSEAVVAEGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEAGVWFYVGESDCIRERLKRHAKRWGDGRGSGXXXGARSFKLDAVVVPVENRSEARRLETALIRAMKDEGFHLVSDKDGSRTHFSS 206
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BLAST of mRNA_L-elsbetiae_contig6922.15693.1 vs. uniprot
Match: A0A8J2SVM6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SVM6_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 5.960e-5
Identity = 28/75 (37.33%), Postives = 45/75 (60.00%), Query Frame = 1 
Query:  373 FYVGESDAIRDRLKRHARRWGGGGKAYKLDAVVVAAENRSEARRLETAVIRAMKEEGFHLVSDKDGSRTHFSSST 597
             YVGE+D++RDRLK+H R +  G      DA+VV  +++S AR+ E   ++ ++  G  L+S  D S  HF  ++
Sbjct:  921 LYVGETDSVRDRLKKHGRTYDIG------DALVVTVKDKSAARKAEATALKKLQALGVPLLSTSDASNVHFGGAS 989
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6922.15693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K8J3_9PHAE2.440e-5255.87DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
D7FNS6_ECTSI1.500e-5157.77N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
A0A8J2SVM6_9STRA5.960e-537.33Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6922contigL-elsbetiae_contig6922:1596..3188 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMutS protein homolog 1A
Ec32 orthologEc-01_004410.1
Exons2
Model size1331
Cds size573
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6922.15693.1prot_L-elsbetiae_contig6922.15693.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6922 2327..3161 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816767.6317801-UTR-L-elsbetiae_contig6922:1595..23261622816767.6317801-UTR-L-elsbetiae_contig6922:1595..2326Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6922 1596..2326 -
1691683798.1094441-UTR-L-elsbetiae_contig6922:1595..23261691683798.1094441-UTR-L-elsbetiae_contig6922:1595..2326Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6922 1596..2326 -
1622816767.6657526-UTR-L-elsbetiae_contig6922:3161..31881622816767.6657526-UTR-L-elsbetiae_contig6922:3161..3188Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6922 3162..3188 -
1691683798.1445148-UTR-L-elsbetiae_contig6922:3161..31881691683798.1445148-UTR-L-elsbetiae_contig6922:3161..3188Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6922 3162..3188 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816767.642438-CDS-L-elsbetiae_contig6922:2326..28811622816767.642438-CDS-L-elsbetiae_contig6922:2326..2881Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6922 2327..2881 -
1691683798.1244962-CDS-L-elsbetiae_contig6922:2326..28811691683798.1244962-CDS-L-elsbetiae_contig6922:2326..2881Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6922 2327..2881 -
1622816767.6524491-CDS-L-elsbetiae_contig6922:3143..31611622816767.6524491-CDS-L-elsbetiae_contig6922:3143..3161Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6922 3144..3161 -
1691683798.1344762-CDS-L-elsbetiae_contig6922:3143..31611691683798.1344762-CDS-L-elsbetiae_contig6922:3143..3161Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6922 3144..3161 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6922.15693.1

>prot_L-elsbetiae_contig6922.15693.1 ID=prot_L-elsbetiae_contig6922.15693.1|Name=mRNA_L-elsbetiae_contig6922.15693.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=191bp
MADAAQVVRRVTGRADCDVIPVDSGYGTPPALEGQSCLYVLRYSSLLDGD
RGDRGAGGRRHPSAEALLPPTGYGDYYAAAAAATTSPAIGEEDARASSSL
SSSPSAPEGEEAGVWFYVGESDAIRDRLKRHARRWGGGGKAYKLDAVVVA
AENRSEARRLETAVIRAMKEEGFHLVSDKDGSRTHFSSST*
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mRNA from alignment at L-elsbetiae_contig6922:1596..3188-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6922.15693.1 ID=mRNA_L-elsbetiae_contig6922.15693.1|Name=mRNA_L-elsbetiae_contig6922.15693.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1593bp|location=Sequence derived from alignment at L-elsbetiae_contig6922:1596..3188- (Laminarionema elsbetiae ELsaHSoW15)
GGCAGCTCTGCCGGAGGCTTCAGGACCATGGCGGATGCGGCGCAGGTGTG
GGAGTGTGTATGTGCGCGTGTGTGGTATATTGCTGCGTCAATGAACGCTT
ACCATGAAGTCCACATCGGCGAACATTCGACCAATAGGCAGGACAGTCGG
GGTGTGTGCTCGCATCACACATTTTCATGTGCTTGTTTCCTTCTTCGCCG
CTGGTTGTTGGTGGGCCGGGGGGTCGGTGGACGGCCACCGGACCACGCCT
GCTGTGTTTATTTATTTTTAACCCACGCCCAATCCACAAATCAATGCTGC
TGTACAGGTCGTGCGCAGGGTCACGGGTCGAGCGGACTGCGACGTGATCC
CGGTGGACTCGGGGTATGGCACGCCTCCCGCGTTGGAGGGGCAGTCATGC
CTGTACGTTCTGCGCTACTCTTCGCTCCTCGACGGTGATAGAGGCGATAG
AGGGGCTGGAGGGCGGCGTCATCCCTCGGCAGAGGCTCTGCTACCGCCGA
CGGGGTACGGCGACTACTACGCGGCGGCGGCGGCGGCTACCACGTCTCCC
GCAATCGGCGAAGAGGATGCTCGTGCTAGTTCTTCCCTCTCCTCTTCTCC
TTCCGCGCCAGAAGGGGAGGAGGCTGGGGTTTGGTTCTACGTCGGAGAGA
GCGATGCCATACGGGACAGGCTTAAGCGGCACGCCAGAAGATGGGGTGGC
GGCGGCAAGGCCTACAAGTTGGACGCCGTTGTGGTTGCGGCGGAGAACAG
GAGCGAGGCTCGGCGGCTGGAGACGGCGGTGATCCGGGCCATGAAGGAGG
AGGGCTTTCACCTGGTGTCAGACAAGGATGGCTCCAGGACGCACTTCTCT
TCTTCGACATAATAGGGAGATCCGGGCTGAAAATATGAACTGTTTCCTTG
CTTGGTGTCTTCTATAAACTTGTGTTCTTACCTGGATACAAAAAAATTGT
CTGTGGGTTCAAAGCGGTCCCTCAAATTTACGGAGCAGAATGGTCAGGGC
TTCCTGGCAACAACTGCGGTTCTCCTCGTGGCCTTGGCTATTTCTTGGTT
GAAAAATAAGCGGGGCGTGTAGTTCGTGTTCTGTTCCCCCTTTGTTTGCA
TGCACTCCGGAAAGGGAGCGCTGCTTGTTTGTGTTTTCCCCCTGGTGTGG
TGTTTTATTATTGGGCCTGTCGATTTTTCTTTGGTGCTTTCGTTGGTCGC
TGTCGAGGGTCATTTTTCGCGTGGTGCGTTTTACTGTTGTAGGTTCCCCC
CCCGTGCGTTTTTACCTACCAGTGGTGTGTGGTTGACGAGGTTGGGTCTG
AGTTGTACGTGGTTGTGGAGAGCAAAATATAGTCCACAAGTACCGTTTTG
GTTGAAACCGCGGTCGTGCAGAAGGAAAACCCCGGCACCCACAATTTTCG
GATGCGTGATACACATCAATGTAACAACAGCATACGAGCTTGCGCTTTCT
GGACGTGTGCATGAACCCATCAAACCTGGCCATATCTCGCGGCCTCTGGT
TAAGTATGCATACCACCCTTTTGTGAACGCTTTGTGTGAACGCCGCCACG
TAAGCGCCGCCACGCACCACCACTGAATAAATTTCATTCCAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6922:1596..3188-

>mRNA_L-elsbetiae_contig6922.15693.1 ID=mRNA_L-elsbetiae_contig6922.15693.1|Name=mRNA_L-elsbetiae_contig6922.15693.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1146bp|location=Sequence derived from alignment at L-elsbetiae_contig6922:1596..3188- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGATGCGGCGCAGATGGCGGATGCGGCGCAGGTCGTGCGCAGGGT
CACGGGTCGAGCGGACTGCGACGTGATCCCGGTGGACTCGGGGTATGGCA
CGCCTCCCGCGTTGGAGGGGCAGTCATGCCTGTACGTTCTGCGCTACTCT
TCGCTCCTCGACGGTGATAGAGGCGATAGAGGGGCTGGAGGGCGGCGTCA
TCCCTCGGCAGAGGCTCTGCTACCGCCGACGGGGTACGGCGACTACTACG
CGGCGGCGGCGGCGGCTACCACGTCTCCCGCAATCGGCGAAGAGGATGCT
CGTGCTAGTTCTTCCCTCTCCTCTTCTCCTTCCGCGCCAGAAGGGGAGGA
GGCTGGGGTTTGGTTCTACGTCGGAGAGAGCGATGCCATACGGGACAGGC
TTAAGCGGCACGCCAGAAGATGGGGTGGCGGCGGCAAGGCCTACAAGTTG
GACGCCGTTGTGGTTGCGGCGGAGAACAGGAGCGAGGCTCGGCGGCTGGA
GACGGCGGTGATCCGGGCCATGAAGGAGGAGGGCTTTCACCTGGTGTCAG
ACAAGGATGGCTCCAGGACGCACTTCTCTTCTTCGACATAAGTCGTGCGC
AGGGTCACGGGTCGAGCGGACTGCGACGTGATCCCGGTGGACTCGGGGTA
TGGCACGCCTCCCGCGTTGGAGGGGCAGTCATGCCTGTACGTTCTGCGCT
ACTCTTCGCTCCTCGACGGTGATAGAGGCGATAGAGGGGCTGGAGGGCGG
CGTCATCCCTCGGCAGAGGCTCTGCTACCGCCGACGGGGTACGGCGACTA
CTACGCGGCGGCGGCGGCGGCTACCACGTCTCCCGCAATCGGCGAAGAGG
ATGCTCGTGCTAGTTCTTCCCTCTCCTCTTCTCCTTCCGCGCCAGAAGGG
GAGGAGGCTGGGGTTTGGTTCTACGTCGGAGAGAGCGATGCCATACGGGA
CAGGCTTAAGCGGCACGCCAGAAGATGGGGTGGCGGCGGCAAGGCCTACA
AGTTGGACGCCGTTGTGGTTGCGGCGGAGAACAGGAGCGAGGCTCGGCGG
CTGGAGACGGCGGTGATCCGGGCCATGAAGGAGGAGGGCTTTCACCTGGT
GTCAGACAAGGATGGCTCCAGGACGCACTTCTCTTCTTCGACATAA
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