mRNA_L-elsbetiae_contig11814.1565.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11814.1565.1
Unique NamemRNA_L-elsbetiae_contig11814.1565.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11814.1565.1 vs. uniprot
Match: A0A6H5KVF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF8_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 5.300e-45
Identity = 112/213 (52.58%), Postives = 137/213 (64.32%), Query Frame = 1 
Query:    1 MSRSMQPFQFHSRRAPAVVRQSGPGRTTLHLDLAG--GGSSRVAGLHGGAAGRGNGGXXXXLRGRRGWWGGSTRRVPPFLEFWGLSSEAGTSEATGQRRWGRTQQAARQRRNRAWFRSPEFLIFVLGLAALLAFIVFVTDMLSNRPFKPMAVLVFVTAGTYAVALARQQRSVAAAEQA--LVIEIIDGSTAERRRAVISKEDRRALFDYFKHR 627
            MS     FQFH+R   AVVRQSGP R+TLH+DLA   G ++   G            XXX  RGRRGWWG S+RR+P FLEFWGL++     E   + R  R +   R+    +  RSPEF IFVLGLAALLAF+VF  DM++ R  +P +VLVFV AGTY +AL +QQR +AA E+A  LV+E++DGS     R VISKEDRR LFDYF  R
Sbjct:   26 MSGRTMSFQFHTRGPSAVVRQSGPERSTLHVDLAAADGETTAATGAAAXXXXXXXXXXXXGWRGRRGWWG-SSRRLPNFLEFWGLAAAVPEGERLRRERERRERSHNRRGPVGSCVRSPEFSIFVLGLAALLAFMVFFCDMIAGRRLRPTSVLVFVAAGTYCLALLKQQRDLAALERAPALVVEVMDGSATSSSRRVISKEDRRNLFDYFTFR 237
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BLAST of mRNA_L-elsbetiae_contig11814.1565.1 vs. uniprot
Match: D8LQW5_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQW5_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 4.850e-44
Identity = 111/209 (53.11%), Postives = 131/209 (62.68%), Query Frame = 1 
Query:    1 MSRSMQPFQFHSRRAPAVVRQSGPGRTTLHLDLAGGGSSRVAGLHGGAAGRGNGGXXXXLRGRRGWWGGSTRRVPPFLEFWGLSSEAGTSEATGQRRWGRTQQAARQRRNRAWFRSPEFLIFVLGLAALLAFIVFVTDMLSNRPFKPMAVLVFVTAGTYAVALARQQRSVAAAEQALVIEIIDGSTAERRRAVISKEDRRALFDYFKHR 627
            MS    PFQFH+RR  AVVRQSGPGR+TLH+DLA G                   XXXX       WG S+RR+P FLEFWG ++     E   + R        R+    +  RSPEF IFVLGLAALLAFIVF+ DM++ R  +P +VLVFV AGTY +AL +QQR +AA+EQALVIEI+DGS     R VISKEDRR LFDYF  R
Sbjct:    1 MSGRTMPFQFHTRRPSAVVRQSGPGRSTLHVDLAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWG-SSRRLPDFLEFWGFAAAVPEDERLRREREXXXXXHRRRGLAGSCVRSPEFSIFVLGLAALLAFIVFICDMITGRRLRPTSVLVFVAAGTYCLALIKQQRDLAASEQALVIEIMDGSATSSSRRVISKEDRRNLFDYFTFR 208
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11814.1565.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KVF8_9PHAE5.300e-4552.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQW5_ECTSI4.850e-4453.11RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11814contigL-elsbetiae_contig11814:484..3241 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score169.5
Seed ortholog evalue2.4e-39
Seed eggNOG ortholog2880.D8LQW5
KEGG koko:K03257,ko:K15694
KEGG Pathwayko03013,map03013
KEGG ModuleM00428
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein modification by small protein conjugation or removal
EggNOG OGsKOG4628@1,KOG4628@2759
EC2.3.2.27
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03012,ko03019,ko04121,ko04147
Ec32 ortholog descriptionZinc finger, RING-type
Ec32 orthologEc-07_001840.1
Exons4
Model size888
Cds size888
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11814.1565.1prot_L-elsbetiae_contig11814.1565.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11814 484..3241 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815384.7678177-CDS-L-elsbetiae_contig11814:483..5811622815384.7678177-CDS-L-elsbetiae_contig11814:483..581Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11814 484..581 +
1691682871.9939482-CDS-L-elsbetiae_contig11814:483..5811691682871.9939482-CDS-L-elsbetiae_contig11814:483..581Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11814 484..581 +
1622815384.7782075-CDS-L-elsbetiae_contig11814:659..9481622815384.7782075-CDS-L-elsbetiae_contig11814:659..948Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11814 660..948 +
1691682872.0050015-CDS-L-elsbetiae_contig11814:659..9481691682872.0050015-CDS-L-elsbetiae_contig11814:659..948Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11814 660..948 +
1622815384.7878056-CDS-L-elsbetiae_contig11814:1995..21341622815384.7878056-CDS-L-elsbetiae_contig11814:1995..2134Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11814 1996..2134 +
1691682872.014612-CDS-L-elsbetiae_contig11814:1995..21341691682872.014612-CDS-L-elsbetiae_contig11814:1995..2134Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11814 1996..2134 +
1622815384.8044522-CDS-L-elsbetiae_contig11814:2879..32411622815384.8044522-CDS-L-elsbetiae_contig11814:2879..3241Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11814 2880..3241 +
1691682872.0243454-CDS-L-elsbetiae_contig11814:2879..32411691682872.0243454-CDS-L-elsbetiae_contig11814:2879..3241Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11814 2880..3241 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11814.1565.1

>prot_L-elsbetiae_contig11814.1565.1 ID=prot_L-elsbetiae_contig11814.1565.1|Name=mRNA_L-elsbetiae_contig11814.1565.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=296bp
MSRSMQPFQFHSRRAPAVVRQSGPGRTTLHLDLAGGGSSRVAGLHGGAAG
RGNGGTGGGLRGRRGWWGGSTRRVPPFLEFWGLSSEAGTSEATGQRRWGR
TQQAARQRRNRAWFRSPEFLIFVLGLAALLAFIVFVTDMLSNRPFKPMAV
LVFVTAGTYAVALARQQRSVAAAEQALVIEIIDGSTAERRRAVISKEDRR
ALFDYFKHRPRQPRREEDKPPLPSPSPPPPPPPPETAPEADDGGGSASVG
GGSGGGGEEAGSPAPTATPPPCPCSAGAAGAAGVAGAAGAAAAPAE
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mRNA from alignment at L-elsbetiae_contig11814:484..3241+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11814.1565.1 ID=mRNA_L-elsbetiae_contig11814.1565.1|Name=mRNA_L-elsbetiae_contig11814.1565.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2758bp|location=Sequence derived from alignment at L-elsbetiae_contig11814:484..3241+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGAGGTCGATGCAGCCGTTTCAGTTTCACTCCCGCCGAGCGCCGGC
CGTCGTTCGCCAGAGCGGCCCCGGCCGGACGACGCTGCACCTCGACCTGT
CCACCACCGCCGCCGGCGGGGCCGCGCCCGCGGCAGCAGCAGGGGCGGCG
GGCGGTGCGGCAGGCCCTGCCGCCAGAGCCGGGGGCGGAAGCAGCAGGGT
TGCGGGGCTTCACGGCGGCGCCGCCGGCCGGGGCAACGGGGGCACCGGTG
GCGGCCTCAGGGGCAGGAGGGGGTGGTGGGGGGGGTCGACCCGCCGGGTT
CCGCCCTTCCTCGAGTTTTGGGGGCTGTCGTCGGAAGCCGGGACCTCGGA
GGCTACTGGCCAGAGGCGGTGGGGGCGGACGCAGCAGGCGGCGCGTCAGC
GGCGGAACCGCGCTTGGTTCCGCTCCCCGGAGTTTTTGATTTTCGTGCTG
GGGCTGGCCGCCCTGGTGAGTTTGGAGCGTGCGCCTGAGTTTGGACCTTG
AACATGAGCGTGAGCATAAGTGTGAGCGTAAGCGTGATCGTAAGCGTGGG
CGTGAGCGTGAGCGTGATTGTGAGCGTAAGCGTGAACGCGCGGTTTCTTG
GCAGTTGTGACGCCTGCCTGGCTGGTCTTCATCTAGGTGAAGTATTTCTG
GTTCGCTGGCGCAAGCAAAGGCGCCAAAAGTGCGTGCTTGCGTGGGTGAG
GTTTCGTTCCGCTTCTGTTGGAGGTCGCGCCGCCTTTATTGTCGCTCGCT
GGCTCTCAACAGGCGTTCTGCCAACATTTCTTTCTTTCCTTCTTTCTCTC
TCTTTAAGTTGACCCCGGCGGTTCCGACGTTTGGTTTCACGTCGCGGGAT
GGACCGGCACAACGCGTGGATGGGGGTGCAGCGAATCGATTTGCCACGTG
TATCCTTTGCAGTATTTTTTCTCTTGGGGTCCTCTCTCCCCCCAACGAGG
CTTTGTGACAGTCGAGCTGACAGCAGTGGGGTTCTGCCCTTGGCGAGTAC
AAGCCGCCGACTCGCCACCGCAAATATAAACTCTAGCATACGTAGCGCCT
GTATAGCACTTGCTCCGAGAGTGTACTATCGTTTAACCCTCCGTGTCATT
ACCGTAGGTGACATAAGATGAGACACCCCCTGGACCGATTTTCAAAGGTC
AAGTACTCCACAGCAAGCAGAGCGTCAGTCCCGAAAAGGGAGGAGTTGGA
AAGATCTCGTCGAGAGCTTTCCGAAAATGTTCGTTTGTGGTTAGAACTGT
GTTCGTTGCGGAGTAACGAAGCTTTCAATATCGGTCCAGGGGGGGTGTCT
TATCTTATGTCACCTACGGTATCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCCTCGCCCCCTGGCTTCACCTCAAACTGATCTCTCCAAACTC
TCTCCTTGTTTTTGATGCACCTCAAACTGATCTCTCCAAACTCTCTCCTT
GTTTTTTATGGACACCGCCGCTCTCGCGTCTCACCCCATCCGGCCCGGCC
CGCCGGAGATAGCTCGCCTTCATTGTTTTCGTGACCGACATGCTGAGCAA
CCGCCCGTTCAAACCGATGGCGGTGCTCGTCTTCGTCACCGCCGGCACCT
ACGCCGTTGCCCTCGCGAGGCAGCAGAGGAGCGTCGCCGCCGCCGAGCAA
GGTACATACCGTATAGAAGTACGACACAAGATAACACACCCCCTGGGTCG
ATTTTCAAAGCTCGGTTACTCCACAACGGGTGTGATCGTAATACCCAACG
ATACGTTTTCTGACGGCTCTTGATGAGATCTTTCCAACGCCGCCCTTTTC
GGGACTGACACTCTTCTCGCTGTGGAGTATATTACTCTTGAGCTTGGAAA
ATCGGTCCCGGGGGTGTGGTATCTTGTGTCGTATACGGTAGTCTGGTGGT
ACTATTACCTACGTACATAGCTGGTGTGTTCCCTCCCCCCTCTGCTGCGC
TTTTATAGTGGTGGGTACTTGTGTTTACTCGTGCGGTGCCGAAGGGTACC
CCGCCTCACGCTAGACTGCTGTTTTGGGTTGTCGGGGCGACGCAGGTTCT
CGGCCGGTTGGGCCTCTCGGAAAAGACAGGGTTTACTGAAGGTTTAGGAC
CATGATTTACGTACCTACACATGTTATGCTGCGTGATGCCTAAGCTGTTA
TGCTGTACGGGTTCTGCGAAAATATGCCGTGATCATCAGACCTCCCGTTC
TTCTCAGCCCCCTGTGCTACTACATACTTGGTGTGTGCACAAATGCACAC
CAAGACACTGCACTGTTTTTGCGCTGACGGCTGCGTCCTGCGAAAGCCGA
ACACCCCCCGGCAGTAGTGCGCTAAGGAAACGTGTCACCCCCCCCCGCCC
CCGCCTCTCGCGCACTCTTGGGCCGCCCGCCAATTGATTATCCCAGCGCT
AGTGATCGAGATCATAGATGGTTCGACGGCTGAGCGCCGGAGGGCCGTGA
TCAGCAAAGAGGATCGCCGAGCCTTGTTCGACTACTTCAAGCATCGCCCA
CGGCAACCGCGCCGGGAGGAAGATAAGCCGCCGCTGCCGTCGCCGTCGCC
GCCGCCGCCGCCGCCGCCGCCGGAGACCGCCCCTGAAGCTGATGACGGCG
GCGGCTCCGCGAGCGTCGGGGGTGGAAGTGGAGGTGGAGGTGAAGAGGCG
GGGTCGCCGGCGCCGACCGCGACTCCGCCGCCGTGTCCCTGCTCGGCGGG
GGCGGCGGGGGCGGCGGGGGTGGCGGGGGCGGCCGGGGCGGCAGCCGCGC
CGGCGGAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11814:484..3241+

>mRNA_L-elsbetiae_contig11814.1565.1 ID=mRNA_L-elsbetiae_contig11814.1565.1|Name=mRNA_L-elsbetiae_contig11814.1565.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1776bp|location=Sequence derived from alignment at L-elsbetiae_contig11814:484..3241+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGAGGTCGATGCAGCCGTTTCAGTTTCACTCCCGCCGAGCGCCGGC
CGTCGTTCGCCAGAGCGGCCCCGGCCGGACGACGCTGCACCTCGACCTAT
GTCGAGGTCGATGCAGCCGTTTCAGTTTCACTCCCGCCGAGCGCCGGCCG
TCGTTCGCCAGAGCGGCCCCGGCCGGACGACGCTGCACCTCGACCTAGCC
GGGGGCGGAAGCAGCAGGGTTGCGGGGCTTCACGGCGGCGCCGCCGGCCG
GGGCAACGGGGGCACCGGTGGCGGCCTCAGGGGCAGGAGGGGGTGGTGGG
GGGGGTCGACCCGCCGGGTTCCGCCCTTCCTCGAGTTTTGGGGGCTGTCG
TCGGAAGCCGGGACCTCGGAGGCTACTGGCCAGAGGCGGTGGGGGCGGAC
GCAGCAGGCGGCGCGTCAGCGGCGGAACCGCGCTTGGTTCCGCTCCCCGG
AGTTTTTGATTTTCGTGCTGGGGCTGGCCGCCCTGAGCCGGGGGCGGAAG
CAGCAGGGTTGCGGGGCTTCACGGCGGCGCCGCCGGCCGGGGCAACGGGG
GCACCGGTGGCGGCCTCAGGGGCAGGAGGGGGTGGTGGGGGGGGTCGACC
CGCCGGGTTCCGCCCTTCCTCGAGTTTTGGGGGCTGTCGTCGGAAGCCGG
GACCTCGGAGGCTACTGGCCAGAGGCGGTGGGGGCGGACGCAGCAGGCGG
CGCGTCAGCGGCGGAACCGCGCTTGGTTCCGCTCCCCGGAGTTTTTGATT
TTCGTGCTGGGGCTGGCCGCCCTGCTCGCCTTCATTGTTTTCGTGACCGA
CATGCTGAGCAACCGCCCGTTCAAACCGATGGCGGTGCTCGTCTTCGTCA
CCGCCGGCACCTACGCCGTTGCCCTCGCGAGGCAGCAGAGGAGCGTCGCC
GCCGCCGAGCAAGCTCGCCTTCATTGTTTTCGTGACCGACATGCTGAGCA
ACCGCCCGTTCAAACCGATGGCGGTGCTCGTCTTCGTCACCGCCGGCACC
TACGCCGTTGCCCTCGCGAGGCAGCAGAGGAGCGTCGCCGCCGCCGAGCA
AGCGCTAGTGATCGAGATCATAGATGGTTCGACGGCTGAGCGCCGGAGGG
CCGTGATCAGCAAAGAGGATCGCCGAGCCTTGTTCGACTACTTCAAGCAT
CGCCCACGGCAACCGCGCCGGGAGGAAGATAAGCCGCCGCTGCCGTCGCC
GTCGCCGCCGCCGCCGCCGCCGCCGCCGGAGACCGCCCCTGAAGCTGATG
ACGGCGGCGGCTCCGCGAGCGTCGGGGGTGGAAGTGGAGGTGGAGGTGAA
GAGGCGGGGTCGCCGGCGCCGACCGCGACTCCGCCGCCGTGTCCCTGCTC
GGCGGGGGCGGCGGGGGCGGCGGGGGTGGCGGGGGCGGCCGGGGCGGCAG
CCGCGCCGGCGGAACGCTAGTGATCGAGATCATAGATGGTTCGACGGCTG
AGCGCCGGAGGGCCGTGATCAGCAAAGAGGATCGCCGAGCCTTGTTCGAC
TACTTCAAGCATCGCCCACGGCAACCGCGCCGGGAGGAAGATAAGCCGCC
GCTGCCGTCGCCGTCGCCGCCGCCGCCGCCGCCGCCGCCGGAGACCGCCC
CTGAAGCTGATGACGGCGGCGGCTCCGCGAGCGTCGGGGGTGGAAGTGGA
GGTGGAGGTGAAGAGGCGGGGTCGCCGGCGCCGACCGCGACTCCGCCGCC
GTGTCCCTGCTCGGCGGGGGCGGCGGGGGCGGCGGGGGTGGCGGGGGCGG
CCGGGGCGGCAGCCGCGCCGGCGGAA
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