mRNA_L-elsbetiae_contig6861.15618.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6861.15618.1
Unique NamemRNA_L-elsbetiae_contig6861.15618.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig6861.15618.1 vs. uniprot
Match: A0A6H5KXM6_9PHAE (SH2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM6_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.530e-24
Identity = 52/87 (59.77%), Postives = 65/87 (74.71%), Query Frame = 3 
Query:  255 TAELFGMCCSRRLNVVELNPNNED---------DSYGAFAGSDIVLALRGHPGCVQDLCRCPLVHEERGLLLHRKVLLEKIIPELQE 488
            TAELF MCCSR L+V E+ P+  +         DSY +FA SDIVLALRGHPGCVQDLCRCP VHEE+GL++HR+ LL + IP+ ++
Sbjct:  617 TAELFVMCCSRNLSVCEMGPSKPEPFTGTEGKADSYESFAKSDIVLALRGHPGCVQDLCRCPRVHEEKGLIVHREKLLREDIPKARK 703
[Close]
BLAST of mRNA_L-elsbetiae_contig6861.15618.1 vs. uniprot
Match: D8LEZ2_ECTSI (SH2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEZ2_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 1.950e-24
Identity = 52/84 (61.90%), Postives = 63/84 (75.00%), Query Frame = 3 
Query:  255 TAELFGMCCSRRLNVVELNPNNED---------DSYGAFAGSDIVLALRGHPGCVQDLCRCPLVHEERGLLLHRKVLLEKIIPE 479
            TAELF MCCSR L+V E+ P+  +         DSY +FA SDIVLALRGHPGCVQDLCRCP VHEE+GL++HR+ LL + IP+
Sbjct:  389 TAELFVMCCSRNLSVCEMGPSKPEPFTGTEGKADSYESFAKSDIVLALRGHPGCVQDLCRCPRVHEEKGLIVHREKLLREDIPK 472
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6861.15618.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KXM6_9PHAE1.530e-2459.77SH2 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LEZ2_ECTSI1.950e-2461.90SH2 domain containing protein n=1 Tax=Ectocarpus s... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6861contigL-elsbetiae_contig6861:3901..6081 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.5
Seed ortholog evalue4.6e-19
Seed eggNOG ortholog2880.D8LEZ2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Src homology 2 domains
EggNOG OGs2CNGK@1,2QW5N@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size569
Cds size297
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6861.15618.1prot_L-elsbetiae_contig6861.15618.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6861 5358..6081 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816759.3309796-UTR-L-elsbetiae_contig6861:3900..41531622816759.3309796-UTR-L-elsbetiae_contig6861:3900..4153Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6861 3901..4153 +
1691683791.9896142-UTR-L-elsbetiae_contig6861:3900..41531691683791.9896142-UTR-L-elsbetiae_contig6861:3900..4153Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6861 3901..4153 +
1622816759.3418784-UTR-L-elsbetiae_contig6861:5338..53571622816759.3418784-UTR-L-elsbetiae_contig6861:5338..5357Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6861 5339..5357 +
1691683792.00593-UTR-L-elsbetiae_contig6861:5338..53571691683792.00593-UTR-L-elsbetiae_contig6861:5338..5357Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6861 5339..5357 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816759.3522258-CDS-L-elsbetiae_contig6861:5357..55641622816759.3522258-CDS-L-elsbetiae_contig6861:5357..5564Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6861 5358..5564 +
1691683792.0212855-CDS-L-elsbetiae_contig6861:5357..55641691683792.0212855-CDS-L-elsbetiae_contig6861:5357..5564Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6861 5358..5564 +
1622816759.3630428-CDS-L-elsbetiae_contig6861:5991..60811622816759.3630428-CDS-L-elsbetiae_contig6861:5991..6081Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6861 5992..6081 +
1691683792.0320253-CDS-L-elsbetiae_contig6861:5991..60811691683792.0320253-CDS-L-elsbetiae_contig6861:5991..6081Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6861 5992..6081 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6861.15618.1

>prot_L-elsbetiae_contig6861.15618.1 ID=prot_L-elsbetiae_contig6861.15618.1|Name=mRNA_L-elsbetiae_contig6861.15618.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=99bp
MCCSRRLNVVELNPNNEDDSYGAFAGSDIVLALRGHPGCVQDLCRCPLVH
EERGLLLHRKVLLEKIIPELQEQYAPPPSTRSPPARSVTPQQSPLPLLP
back to top

mRNA from alignment at L-elsbetiae_contig6861:3901..6081+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6861.15618.1 ID=mRNA_L-elsbetiae_contig6861.15618.1|Name=mRNA_L-elsbetiae_contig6861.15618.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2181bp|location=Sequence derived from alignment at L-elsbetiae_contig6861:3901..6081+ (Laminarionema elsbetiae ELsaHSoW15)
CTCTTCTCCGAAGCGCCGCGCCCTCCTGGTGCTCGACGGCTGCACGCAGC
AGGTGATGGTTGGGCGGGTGCGCGTCTCCCTGAAGGACCTGCTGAGGAGC
CTTCGGGAGGCGTTTGACGCGGCGGGGGTGAGGCTCACGGCGGCGGTGAC
GATGCGGGCGGGCGGGCCGGCGGATCCCGGGCGGGTGGGGATCCTCGGCG
AGGAGACGATCGTCGTGGAGGCGCTCGATGCGAGGAGGTGCGTCTCTGTG
ACTGTTGTTGTGATTGTGGGTTGTGGGACGGATGTTTTGCCTCTATGTTT
TTTTTTTGTTTGTTTTTTTGTCTGCCCATTATTGGATTTTTTTTTGTCTG
CCCCTCTGGCCCCCATCCTCCACTTCTACTCTAGCCGTACGACCCTACCG
GGGTCACATAGGAGGGGGGGGTTGGACCCCCGCCTGCGGTGCCTGCCTAG
GGTTTTTTTATCGCGAGCAGGGTTCAGCACTCCCCACCCTCGTCAACAAT
AAGTCGAAGTAGTATTTACTCACGAAATCGTTTTCAATTTTGCCAGGAAC
GAATGTGAGAAAAAACTCGCTTCGCTGGGGCTCGAATCCAAGACCTGGTG
CATTAGAAGGTTGCGTGGATACCAACTAGACTACCGGGGCGACCGGCAAT
GTACGCTCTTTTGTCGCTGTGGTTGGGACGGATGTTGTGCCTTTCCGCTC
TTCTGTCGCTATGGTTTGGGATGGGTGTTGTGCCTTTTGCTCTTCTTCCC
CTCTCTTGTTTTGTGTCTTGCTTGGCGTGCTGTTGTTTGCGTTGTGCACC
GCCTTCTCGTGCTGGTGGTGATGGCGATCGAGCGCTTGCTGCTTGCTTTT
GGCTCTGCTCTGCTCGGTGTTATGAGGTGGTCAAACAAGCGGCCGTATTC
TCCAAAGCCCTTTGTTATTCTCTAGTTTTTTTTATCAAGTGTCAGCCGTC
TGCATGTATGTATGTCCGACCTGTGAGAAACGCCGTTCCAGGGGAGCCGT
CGTACCTAGACACGCTCATCTTGGGGTTTTTAGAGTGGCAAATCACACTC
TTCAACCGTTGACAACAGTTGACAGGTATCCGTTCGTTCGCTGGCCGAGC
CCACGGGGTAGGCTTGATCTTGACCCTTTGGCCGACCCTGGAAATGTTTT
TCACCCCACCTCTTTTTCTTCTTATTACTTTATCTTCCTTCGCCTCACGT
GCTTCTGTTATTTTTATCTCTTTCGCTCCTTTCGCCCGGCACGGCTGCCG
CGCGTTACCTTGCCCTCGTCGTTTGAGCTGAACTGAACTGAACGGAACTG
AACCGAACCGAACCACCACACGACGCGTTCGCCCTCTTGTTTCTTGCGCT
GTTTGGCGTCTCTTTCTCACGCGGCGCGTGGTCTTCTTTGTTTCATTTTT
CTTCTTTTTCTTCTTCTCCCCGCGGTGACGGGTTGCAGCACGGCCGAGCT
GTTTGGGATGTGCTGCTCTCGCAGGCTTAACGTCGTCGAGCTGAACCCAA
ACAACGAGGACGACTCGTACGGCGCCTTCGCCGGGAGCGACATCGTGCTC
GCGCTGCGGGGCCACCCGGGATGCGTGCAGGACTTGTGCCGCTGCCCGCT
CGTCCACGAAGAGAGGGGGCTCCTGCTGCACAGAAAAGTGCTCCTGGAGA
AAATCATTCCCGAGGTACATATATATATATATATGTAAAGGGGAACAGGG
GGGCCGGCAACGGCGTCGGTGATGAAAGCCATATACCTTGAGTGGTAAAA
CGCCCGGCAGTCTACATCTATCTGTAGTTTGTCCATAGTATGCACTCGAG
GCCGACGACGGAAAGCAACTTGGCTTCAAGTGTCAAGTAGCCCTCACCCG
TGCCGCGTGGGAATGCCACTTTTTCGCCGGCCGGCCAGTCAGGCAGCCCG
CCCGCCCGCCGCTGGAGGTGGCCGCGCCGCGCGCGGCCGGCGCCTTGATG
ATTTACCAGTCAAGGTTTAGGTTTCCCATCGTTGTCATGAGTGATGACGA
GTTCTTCCCCCTACCCTCCCCCGTTCCCATCATGTCTCTCCTCTCCCCGT
TTTCCCCCTTGGGCTGCTGCGCCGTTTTCTCCCTCGAGCAGCTCCAAGAG
CAATACGCGCCACCGCCGTCGACGCGGTCGCCGCCGGCGCGATCGGTGAC
GCCGCAGCAGTCGCCGCTGCCGCTGCTGCCG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6861:3901..6081+

>mRNA_L-elsbetiae_contig6861.15618.1 ID=mRNA_L-elsbetiae_contig6861.15618.1|Name=mRNA_L-elsbetiae_contig6861.15618.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=594bp|location=Sequence derived from alignment at L-elsbetiae_contig6861:3901..6081+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGCTGCTCTCGCAGGCTTAACGTCGTCGAGCTGAACCCAAACAACGA
GGACGACTCGTACGGCGCCTTCGCCGGGAGCGACATCGTGCTCGCGCTGC
GGGGCCACCCGGGATGCGTGCAGGACTTGTGCCGCTGCCCGCTCGTCCAC
GAAGAGAGGGGGCTCCTGCTGCACAGAAAAGTGCTCCTGGAGAAAATCAT
TCCCGAGATGTGCTGCTCTCGCAGGCTTAACGTCGTCGAGCTGAACCCAA
ACAACGAGGACGACTCGTACGGCGCCTTCGCCGGGAGCGACATCGTGCTC
GCGCTGCGGGGCCACCCGGGATGCGTGCAGGACTTGTGCCGCTGCCCGCT
CGTCCACGAAGAGAGGGGGCTCCTGCTGCACAGAAAAGTGCTCCTGGAGA
AAATCATTCCCGAGCTCCAAGAGCAATACGCGCCACCGCCGTCGACGCGG
TCGCCGCCGGCGCGATCGGTGACGCCGCAGCAGTCGCCGCTGCCGCTGCT
GCCGCTCCAAGAGCAATACGCGCCACCGCCGTCGACGCGGTCGCCGCCGG
CGCGATCGGTGACGCCGCAGCAGTCGCCGCTGCCGCTGCTGCCG
back to top