mRNA_L-elsbetiae_contig685.15608.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig685.15608.1
Unique NamemRNA_L-elsbetiae_contig685.15608.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig685.15608.1 vs. uniprot
Match: D8LG89_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG89_ECTSI)

HSP 1 Score: 197 bits (501), Expect = 3.120e-63
Identity = 97/120 (80.83%), Postives = 109/120 (90.83%), Query Frame = 1 
Query:    1 ARVCIGLSVPGIIFLIIIGLMFDKQGFYTSVDIHDSSAAASDCYFAALLYVVAIGVSFGGIWYEKSSRGFLATTQEELHHGDESAGLLSADDSSYGSLSYLSQMPLMPQGYSRSDNYVEG 360
            ARVCIGLS+PGIIFLIIIG+MFDKQGFYTSV++ D +AAAS+CYFAALLYVVAIGVS GGI Y+K+ RG L TTQEEL HGDES+GLL  +DS YGSL+YLSQMPLMPQGYSRSDNYV+G
Sbjct:    8 ARVCIGLSIPGIIFLIIIGIMFDKQGFYTSVEVDDPTAAASECYFAALLYVVAIGVSLGGICYDKNRRGMLVTTQEELAHGDESSGLLGREDSGYGSLTYLSQMPLMPQGYSRSDNYVDG 127
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BLAST of mRNA_L-elsbetiae_contig685.15608.1 vs. uniprot
Match: A0A836CCG9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCG9_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 3.740e-5
Identity = 24/68 (35.29%), Postives = 43/68 (63.24%), Query Frame = 1 
Query:    1 ARVCIGLSVPGIIFLIIIGLMFDKQGFYTSVDIHD---SSAAASDCYFAALLYVVAIGVSFGGIWYEK 195
            ++ C  LS  GI+FL I+G++F++Q F+T+ +++    S  AA   Y+ A +Y + + +S  G+WY K
Sbjct:    8 SQCCCLLSGMGIVFLTILGILFEEQPFFTNPEVYHKDGSEEAAEAVYWGAFIYFITLLMSLYGMWYSK 75
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig685.15608.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LG89_ECTSI3.120e-6380.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CCG9_9STRA3.740e-535.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig685contigL-elsbetiae_contig685:32028..34270 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-17_004170.1
Exons3
Model size363
Cds size363
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig685.15608.1prot_L-elsbetiae_contig685.15608.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig685 32028..34270 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816758.4234855-CDS-L-elsbetiae_contig685:32027..321661622816758.4234855-CDS-L-elsbetiae_contig685:32027..32166Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig685 32028..32166 +
1691683791.3564436-CDS-L-elsbetiae_contig685:32027..321661691683791.3564436-CDS-L-elsbetiae_contig685:32027..32166Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig685 32028..32166 +
1622816758.4346023-CDS-L-elsbetiae_contig685:32964..330501622816758.4346023-CDS-L-elsbetiae_contig685:32964..33050Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig685 32965..33050 +
1691683791.371353-CDS-L-elsbetiae_contig685:32964..330501691683791.371353-CDS-L-elsbetiae_contig685:32964..33050Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig685 32965..33050 +
1622816758.448045-CDS-L-elsbetiae_contig685:34132..342701622816758.448045-CDS-L-elsbetiae_contig685:34132..34270Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig685 34133..34270 +
1691683791.3893044-CDS-L-elsbetiae_contig685:34132..342701691683791.3893044-CDS-L-elsbetiae_contig685:34132..34270Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig685 34133..34270 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig685.15608.1

>prot_L-elsbetiae_contig685.15608.1 ID=prot_L-elsbetiae_contig685.15608.1|Name=mRNA_L-elsbetiae_contig685.15608.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=121bp
ARVCIGLSVPGIIFLIIIGLMFDKQGFYTSVDIHDSSAAASDCYFAALLY
VVAIGVSFGGIWYEKSSRGFLATTQEELHHGDESAGLLSADDSSYGSLSY
LSQMPLMPQGYSRSDNYVEG*
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mRNA from alignment at L-elsbetiae_contig685:32028..34270+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig685.15608.1 ID=mRNA_L-elsbetiae_contig685.15608.1|Name=mRNA_L-elsbetiae_contig685.15608.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2243bp|location=Sequence derived from alignment at L-elsbetiae_contig685:32028..34270+ (Laminarionema elsbetiae ELsaHSoW15)
GCGAGGGTGTGCATCGGGCTGTCCGTGCCGGGCATCATATTCCTGATCAT
AATCGGCCTCATGTTCGACAAGCAGGGTTTTTACACCTCGGTAGACATAC
ACGACTCCTCCGCAGCGGCGTCTGACTGCTATTTTGCAGGTGTGTGATGT
ATGTACGCAGCGTCCAGAGTATGCACTACAGCGTCTCGGAGGTGTTGAAC
AAGCAAAGTCGTAAAATATGGGCAAGAGTGCGATGAAGGGTGTCTGTCAC
TGAATTGGTTGGTGGTGGGCCTTTGTGCATTTTATATATATGTAACTGCG
TGTGTCCCTTGTTTTGTCGCCTTTTCGTGCGTGCTTGCGTTAGGGATGGG
AATGCAGCGCCTGACTATTTTTTTTGCAAGCTGCATGTTAGGTTACACAT
CGGCAAGGAGTGATGAAATGAGTGTGTGTGTGTCTGGTGTACGGAGAGCA
AGGGCGCGTTTGCGCGTGGTGAAGCAGCTACCGAGGATTACTTTGCCTTT
GTTAGGTGCAGTCAATGTCCGCGTGACGCAGATTCCAAGTGCGGAATTCA
TGCCAGAGCCTCTTGGGCCGGGGAGCCCCGCCATTTATAGCCAATACGCA
TGCATGTCGTTGTCACATGCTCCTATAATTTGGAGGTCAGATTTTCCGGG
GGCGTTCGTGTGCGTACGCGTGTCTACGCTGCTTCTCAGCTTCCTGCTTT
CGTTGGTTTCCGAATTCCTAACTCCTTTCCCCCGCCCGCATCGCACCGCA
CCCTGTAACCAAGCCCGTGTGCTTGTCGATGTTTGCGTTGTCGCTCCCTC
TCGCCTGCGTGCCCATCATGCCATGTCATGTCATGTCACGTGCTGTGCGT
GGTTATTACCCGTCGTGGTCTGATATCGTTCTTTCTTTTTATTCACTCTC
TCTGTGCTATATCTTGTGCCATTCTTCTCCCGCTCAGCGTTGCTGTACGT
AGTGGCGATCGGGGTATCTTTCGGGGGCATCTGGTACGAGAAGAGCAGCA
GAGGGTTCTTGGCAACCACGCAGGTAAGGGCAGGAGAGGAGAGAAGAGAA
AGAAAGACAATAAAAGACGGGAGAAGAGAAAGAGAGCGAAATAAGACAAA
AGAGGAGGAGAGGAGAGGAAAGAAGAGGAGAGAAGAGAAGGGGAGGCTGA
CGGATTTCCCCTGCGAGTCGATCGATGAGAACTGCGTAGACAGAGGTCAA
AAGCACCATTATTCGCTCGCTTGCCACTGCTGTCGACCAGCCACTTCTTG
TATTGCTCTACATGACATGTTCTCACCTCTCTCATCTCTCGCTCTCCTTT
TTCCAAAATACATATCAGAATATGGTTGAGTGCGTACATATCGTGGATAT
TTGAAAATCCGTGGTTGTGCTGAGGCCTTGGGGGCATTCCAGAGTGTACA
CCGCTGTCTGCGTACAAGGCGCGAATATCGGATTGCTGGTGATGTCGCCA
CCCCTCACGCAGCAGCCACCACGCTTCTTGTTCCTCCCGGCGCTGATGTT
GCTATCTATGTAACGCGCTGAAAAGTGCCACATTTACTTCCCTCAACAAA
TCATCCCGTGGAGAAGAAAATCACGAATTGCTGTTGTGCCGCTTGCTGAT
ATTGTGCCACTGTTGTCTATGTAGTGTCTACAGCAGCAGCCCCCCCCCCT
GGAACAACGTTTTCACAAGTTGGACGTATTTAGACAGACCGCTGACGTTT
TTTGTACATAAAACAGTTGTTAAAAAGTGGTGTTTTTTACTATTAAAACG
AACAGGACGGGCGAGTTCAACCAACGCGTCCGCGGTCAAGCTTGCATTTT
GTTTAATAACAGATATCCACTAAATAAATGTCAGCAGCCTCGTACGTCCA
ACCTGGAAAAAATGGAAAGAGGCGTTCTAGGGGAGAGGGGCTGTTGTAGA
CACATTAATAACCCTCCCAAACTACAGCCAGCAGTCACTTTTTTTTTGTG
TATTTTTCCGCCGACGGGTTTCTTTGCAAACGGTGTGGACGACTCCTACC
CTATTTGTACTGGCGTTTTATGTATCTCGTATCTCGTGTCTCGTATGATC
GACCCACAACCATCAACATGACCGTGACCATGAACCGTTGTTTTCACCCC
GCCAGGAGGAGCTCCACCACGGAGACGAGAGCGCAGGGCTGCTCAGTGCA
GATGACTCCAGCTACGGTTCCTTGTCGTACCTTTCCCAGATGCCGCTCAT
GCCGCAGGGCTACTCGCGAAGTGACAACTACGTGGAGGGGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig685:32028..34270+

>mRNA_L-elsbetiae_contig685.15608.1 ID=mRNA_L-elsbetiae_contig685.15608.1|Name=mRNA_L-elsbetiae_contig685.15608.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=726bp|location=Sequence derived from alignment at L-elsbetiae_contig685:32028..34270+ (Laminarionema elsbetiae ELsaHSoW15)
GCGAGGGTGTGCATCGGGCTGTCCGTGCCGGGCATCATATTCCTGATCAT
AATCGGCCTCATGTTCGACAAGCAGGGTTTTTACACCTCGGTAGACATAC
ACGACTCCTCCGCAGCGGCGTCTGACTGCTATTTTGCAGGCGAGGGTGTG
CATCGGGCTGTCCGTGCCGGGCATCATATTCCTGATCATAATCGGCCTCA
TGTTCGACAAGCAGGGTTTTTACACCTCGGTAGACATACACGACTCCTCC
GCAGCGGCGTCTGACTGCTATTTTGCAGCGTTGCTGTACGTAGTGGCGAT
CGGGGTATCTTTCGGGGGCATCTGGTACGAGAAGAGCAGCAGAGGGTTCT
TGGCAACCACGCAGCGTTGCTGTACGTAGTGGCGATCGGGGTATCTTTCG
GGGGCATCTGGTACGAGAAGAGCAGCAGAGGGTTCTTGGCAACCACGCAG
GAGGAGCTCCACCACGGAGACGAGAGCGCAGGGCTGCTCAGTGCAGATGA
CTCCAGCTACGGTTCCTTGTCGTACCTTTCCCAGATGCCGCTCATGCCGC
AGGGCTACTCGCGAAGTGACAACTACGTGGAGGGGTAAGAGGAGCTCCAC
CACGGAGACGAGAGCGCAGGGCTGCTCAGTGCAGATGACTCCAGCTACGG
TTCCTTGTCGTACCTTTCCCAGATGCCGCTCATGCCGCAGGGCTACTCGC
GAAGTGACAACTACGTGGAGGGGTAA
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