mRNA_L-elsbetiae_contig6819.15578.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6819.15578.1
Unique NamemRNA_L-elsbetiae_contig6819.15578.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6819.15578.1 vs. uniprot
Match: D7G2I1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I1_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 1.040e-24
Identity = 56/73 (76.71%), Postives = 64/73 (87.67%), Query Frame = 3 
Query:  645 SQGQTLRKIILDIRRPPGHTMDSNAVYVALSRATGLDDLNLLFAVSLEDLNQLQNPDIIAMVAYLNRLDEATV 863
            SQGQT+ KIILDIRRPPGH +D  AVYVALSRATGL DLNLLF V+L+DLNQ QNPDI+A+V YL+RLDE T+
Sbjct:  249 SQGQTMPKIILDIRRPPGHAVDCAAVYVALSRATGLGDLNLLFPVTLQDLNQPQNPDIVAIVNYLHRLDETTM 321
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BLAST of mRNA_L-elsbetiae_contig6819.15578.1 vs. uniprot
Match: D7G3U9_ECTSI (ATP-dependent DNA helicase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U9_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 3.420e-24
Identity = 56/73 (76.71%), Postives = 64/73 (87.67%), Query Frame = 3 
Query:  645 SQGQTLRKIILDIRRPPGHTMDSNAVYVALSRATGLDDLNLLFAVSLEDLNQLQNPDIIAMVAYLNRLDEATV 863
            SQGQT+ KIILDIRRPPGH +D  AVYVALSRATGL DLNLLF V+L+DLNQ QNPDI+A+V YL+RLDE T+
Sbjct: 1956 SQGQTMPKIILDIRRPPGHAVDCAAVYVALSRATGLGDLNLLFPVTLQDLNQPQNPDIVAIVNYLHRLDETTM 2028
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BLAST of mRNA_L-elsbetiae_contig6819.15578.1 vs. uniprot
Match: A0A6H5K6P6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6P6_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 2.230e-15
Identity = 45/66 (68.18%), Postives = 53/66 (80.30%), Query Frame = 3 
Query:  666 KIILDIRRPPGHTMDSNAVYVALSRATGLDDLNLLFAVSLEDLNQLQNPDIIAMVAYLNRLDEATV 863
            KIILDIR PPG  MD  AVYVALSRAT LD LNLLF V+LEDLNQ  + DI+A++ YL+RLD+ T+
Sbjct:    3 KIILDIRPPPGTGMDPAAVYVALSRATSLDALNLLFPVTLEDLNQPPDRDILAIINYLHRLDKETL 68
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BLAST of mRNA_L-elsbetiae_contig6819.15578.1 vs. uniprot
Match: A0A6H5JN07_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN07_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 2.910e-11
Identity = 35/68 (51.47%), Postives = 55/68 (80.88%), Query Frame = 3 
Query:  657 TLRKIILDIRRPPGHTMDSNAVYVALSRATGLDDLNLLFAVSLEDLNQLQNPDIIAMVAYLNRLDEAT 860
            +LR+IILD+++PP   +D  + Y+ALSRAT L+DL LLF V+LEDL++ +N D++A++ +L+RL+E T
Sbjct: 1839 SLRRIILDLQKPPQPLVDPASSYLALSRATYLEDLYLLFPVTLEDLSRPRNKDVVALIEFLHRLEETT 1906
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BLAST of mRNA_L-elsbetiae_contig6819.15578.1 vs. uniprot
Match: A0A6H5KPV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV6_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 8.800e-8
Identity = 34/56 (60.71%), Postives = 43/56 (76.79%), Query Frame = 3 
Query:  696 GHTMDSNAVYVALSRATGLDDLNLLFAVSLEDLNQLQNPDIIAMVAYLNRLDEATV 863
            G  MD  AVYVAL RAT L+ LNLLF V+LEDLNQ  + DI+A++ YL+RLD+ T+
Sbjct:  248 GTAMDPAAVYVALFRATILEALNLLFPVTLEDLNQPPDRDILAIINYLHRLDKETL 303
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6819.15578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G2I1_ECTSI1.040e-2476.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3U9_ECTSI3.420e-2476.71ATP-dependent DNA helicase n=2 Tax=Ectocarpus sili... [more]
A0A6H5K6P6_9PHAE2.230e-1568.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN07_9PHAE2.910e-1151.47ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5KPV6_9PHAE8.800e-860.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6819contigL-elsbetiae_contig6819:2..1619 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_002730.1
Exons2
Model size865
Cds size780
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6819.15578.1prot_L-elsbetiae_contig6819.15578.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6819 80..1612 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816755.1363037-UTR-L-elsbetiae_contig6819:1..791622816755.1363037-UTR-L-elsbetiae_contig6819:1..79Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6819 2..79 -
1691683788.9413273-UTR-L-elsbetiae_contig6819:1..791691683788.9413273-UTR-L-elsbetiae_contig6819:1..79Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6819 2..79 -
1622816755.2194703-UTR-L-elsbetiae_contig6819:1612..16191622816755.2194703-UTR-L-elsbetiae_contig6819:1612..1619Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6819 1613..1619 -
1691683788.9684258-UTR-L-elsbetiae_contig6819:1612..16191691683788.9684258-UTR-L-elsbetiae_contig6819:1612..1619Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6819 1613..1619 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816755.1889021-CDS-L-elsbetiae_contig6819:79..5371622816755.1889021-CDS-L-elsbetiae_contig6819:79..537Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6819 80..537 -
1691683788.9514165-CDS-L-elsbetiae_contig6819:79..5371691683788.9514165-CDS-L-elsbetiae_contig6819:79..537Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6819 80..537 -
1622816755.2046256-CDS-L-elsbetiae_contig6819:1290..16121622816755.2046256-CDS-L-elsbetiae_contig6819:1290..1612Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6819 1291..1612 -
1691683788.9599543-CDS-L-elsbetiae_contig6819:1290..16121691683788.9599543-CDS-L-elsbetiae_contig6819:1290..1612Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6819 1291..1612 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6819.15578.1

>prot_L-elsbetiae_contig6819.15578.1 ID=prot_L-elsbetiae_contig6819.15578.1|Name=mRNA_L-elsbetiae_contig6819.15578.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=260bp
MTEWREDRFVAPIMPSRPRHARMRASFHCQPLLSSPDSTSAHALPPRTSC
LPLASTSLLLPGQLSTRKPPLRNVFFLPSRVIKPRRSPARAVYTRNSTFQ
ARGATAANATTRAAGTFLRSRGLNPRRRRRRPRNTSLPPFNCFFCRSPIG
YKTMYLRMDHPKGGVNQWNGLPRMVYIHADGEKCEGKAPPPDTNHPCVAC
GKSAPEITTIRDVTRTDTAEDHSGHSATSRAHHGQQRRLRRSLSRHRPRR
PEPSLRCIA*
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mRNA from alignment at L-elsbetiae_contig6819:2..1619-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6819.15578.1 ID=mRNA_L-elsbetiae_contig6819.15578.1|Name=mRNA_L-elsbetiae_contig6819.15578.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1618bp|location=Sequence derived from alignment at L-elsbetiae_contig6819:2..1619- (Laminarionema elsbetiae ELsaHSoW15)
CCGGTGGATGACAGAATGGAGGGAAGATCGTTTTGTTGCACCGATCATGC
CCAGCCGCCCGCGCCACGCGCGTATGCGAGCGTCATTTCACTGCCAGCCT
CTTCTCTCCTCCCCAGACAGCACCTCCGCACACGCCCTTCCACCCAGAAC
GTCATGCCTGCCTCTAGCCTCAACGTCTCTGCTTCTGCCTGGGCAGCTTT
CAACGAGGAAGCCACCTCTGAGGAACGTGTTCTTCCTCCCTTCTCGGGTG
ATCAAGCCGCGACGCTCACCTGCCCGTGCTGTCTACACCAGGAATTCAAC
ATTCCAGGCCCGAGGGGCTACGGCGGCGAGTAAGTCTCTGTGCAGCAGTA
CTGCTGTAGGCGCTTTTTTTGCAGATCGAGAGGTAGGTTGTAACAACCAA
CGCCCACGGCAGTGTGTGTTGTAGCCAATGTACACGTCGGCTTCTCTTAG
GTGTTCCCATGGCGGTGAGCTGCATCTCTACTCTTTCGAGGTAGAGAGCG
CGTTCACACATCAGCTGTGAACTTGTTCGGCGTAGAAAATTCTTCACTGC
GCCGATGTGTGCTGACTTGACTGCTTGTAGGCATCGTGTACACGCTCTTT
CCTCTTCGTGGAGTTCGGGTAGGCAGTAGATATGTATGTAGTACCACGTG
CTCCCCGCCGCATCAACACCCTCCGTTCATTTACAGAAAATGTGCGGTCT
AGAGTGAAGCATAAATCGTACGGCCTAATATAGAACGCAGCCGTGTGCAT
GTAGATGCATGCGCTGCTGGGGGCTCTGTTATTACTCCTCTTCGTGGAGT
AGACTACCGGGTACGCAGAAGTATGTGTGCGCCGTACTTGCTGGAAGCTT
GTCAACACCCTCCGTTCGTTTTGAGAAAATATACGGTCTAGAGCAGAGGA
AATTGTATGGTCTAGAACACAGCTGTGTGTAGATTATCTTCCCTCTTCGT
GGAGAGCACCGGTGCGCAGTGCTGTGTCCTGTTGCTGTGTGAACAAGCTA
ATACAATCGTTATCCTCAACGCAGCCCTCCCTTTTTCGACGCCATCCCAT
GCTGTTCTCGTTTCCTTTTTCCTTGTGCGCAGATGCAACAACCAGAGCTG
CCGGTACGTTTCTTCGCAGTCGAGGGCTGAACCCACGGAGGAGGAGAAGG
CGGCCAAGAAATACGTCACTCCCTCCGTTCAACTGCTTCTTCTGTCGCTC
GCCGATCGGCTACAAGACCATGTATCTGCGCATGGACCACCCGAAGGGCG
GGGTGAACCAGTGGAACGGGCTGCCGCGCATGGTCTACATCCATGCCGAC
GGCGAAAAGTGCGAGGGCAAGGCGCCCCCCCCCGACACCAACCACCCGTG
CGTCGCGTGCGGCAAGTCGGCGCCGGAGATCACGACGATCCGCGACGTCA
CAAGGACAGACACTGCGGAAGATCATTCTGGACATTCGGCGACCTCCCGG
GCACACCATGGACAGCAACGCCGTCTACGTCGCTCTCTCTCGCGCCACAG
GCCTCGACGACCTGAACCTTCTCTTCGCTGTATCGCTTGAAGATCTCAAC
CAGCTGCAGAACCCGGACATCATCGCCATGGTCGCCTACCTCAACCGTCT
CGACGAGGCTACCGTCAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6819:2..1619-

>mRNA_L-elsbetiae_contig6819.15578.1 ID=mRNA_L-elsbetiae_contig6819.15578.1|Name=mRNA_L-elsbetiae_contig6819.15578.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1560bp|location=Sequence derived from alignment at L-elsbetiae_contig6819:2..1619- (Laminarionema elsbetiae ELsaHSoW15)
ATGACAGAATGGAGGGAAGATCGTTTTGTTGCACCGATCATGCCCAGCCG
CCCGCGCCACGCGCGTATGCGAGCGTCATTTCACTGCCAGCCTCTTCTCT
CCTCCCCAGACAGCACCTCCGCACACGCCCTTCCACCCAGAACGTCATGC
CTGCCTCTAGCCTCAACGTCTCTGCTTCTGCCTGGGCAGCTTTCAACGAG
GAAGCCACCTCTGAGGAACGTGTTCTTCCTCCCTTCTCGGGTGATCAAGC
CGCGACGCTCACCTGCCCGTGCTGTCTACACCAGGAATTCAACATTCCAG
GCCCGAGGGGCTACGGCGGCGAATGACAGAATGGAGGGAAGATCGTTTTG
TTGCACCGATCATGCCCAGCCGCCCGCGCCACGCGCGTATGCGAGCGTCA
TTTCACTGCCAGCCTCTTCTCTCCTCCCCAGACAGCACCTCCGCACACGC
CCTTCCACCCAGAACGTCATGCCTGCCTCTAGCCTCAACGTCTCTGCTTC
TGCCTGGGCAGCTTTCAACGAGGAAGCCACCTCTGAGGAACGTGTTCTTC
CTCCCTTCTCGGGTGATCAAGCCGCGACGCTCACCTGCCCGTGCTGTCTA
CACCAGGAATTCAACATTCCAGGCCCGAGGGGCTACGGCGGCGAATGCAA
CAACCAGAGCTGCCGGTACGTTTCTTCGCAGTCGAGGGCTGAACCCACGG
AGGAGGAGAAGGCGGCCAAGAAATACGTCACTCCCTCCGTTCAACTGCTT
CTTCTGTCGCTCGCCGATCGGCTACAAGACCATGTATCTGCGCATGGACC
ACCCGAAGGGCGGGGTGAACCAGTGGAACGGGCTGCCGCGCATGGTCTAC
ATCCATGCCGACGGCGAAAAGTGCGAGGGCAAGGCGCCCCCCCCCGACAC
CAACCACCCGTGCGTCGCGTGCGGCAAGTCGGCGCCGGAGATCACGACGA
TCCGCGACGTCACAAGGACAGACACTGCGGAAGATCATTCTGGACATTCG
GCGACCTCCCGGGCACACCATGGACAGCAACGCCGTCTACGTCGCTCTCT
CTCGCGCCACAGGCCTCGACGACCTGAACCTTCTCTTCGCTGTATCGCTT
GAATGCAACAACCAGAGCTGCCGGTACGTTTCTTCGCAGTCGAGGGCTGA
ACCCACGGAGGAGGAGAAGGCGGCCAAGAAATACGTCACTCCCTCCGTTC
AACTGCTTCTTCTGTCGCTCGCCGATCGGCTACAAGACCATGTATCTGCG
CATGGACCACCCGAAGGGCGGGGTGAACCAGTGGAACGGGCTGCCGCGCA
TGGTCTACATCCATGCCGACGGCGAAAAGTGCGAGGGCAAGGCGCCCCCC
CCCGACACCAACCACCCGTGCGTCGCGTGCGGCAAGTCGGCGCCGGAGAT
CACGACGATCCGCGACGTCACAAGGACAGACACTGCGGAAGATCATTCTG
GACATTCGGCGACCTCCCGGGCACACCATGGACAGCAACGCCGTCTACGT
CGCTCTCTCTCGCGCCACAGGCCTCGACGACCTGAACCTTCTCTTCGCTG
TATCGCTTGA
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