mRNA_L-elsbetiae_contig68.15559.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig68.15559.1
Unique NamemRNA_L-elsbetiae_contig68.15559.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig68.15559.1 vs. uniprot
Match: D8LP20_ECTSI (Vacuolar protein sorting-associated protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP20_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 1.970e-27
Identity = 73/121 (60.33%), Postives = 82/121 (67.77%), Query Frame = 1 
Query:    7 DNSFSLHWLRNETGLPVVCSAHCRESRGSGXXXXXXXA-ADGNEDAEAA-LPVRVPAGEEAPMGGSLGLPLRAVVLEFEERGQGRERGAGGASXXXXXXMATATAAVTKSWRSLRPIDLDV 363
            DNSFSLHWLRNETGLPVVCSAH RE+RG  XXXXX     DG +DAEA  +PV+VP G+EAP+  SLG P+RAVVLE EE+G  RE    GA+                SWRSLRPI LDV
Sbjct: 3382 DNSFSLHWLRNETGLPVVCSAHYREARGGXXXXXXSLGLTDGEDDAEATTVPVKVPVGQEAPVAASLGRPVRAVVLELEEKGGEREEEEEGAT----------------SWRSLRPIALDV 3486
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BLAST of mRNA_L-elsbetiae_contig68.15559.1 vs. uniprot
Match: A0A6H5JKL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKL9_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 3.060e-16
Identity = 64/134 (47.76%), Postives = 70/134 (52.24%), Query Frame = 1 
Query:    7 DNSFSLHWLRNETGLPVVCSAHCRESRGSGXXXXXXXAADGNEDAEAALPV---------------RVPAGEEAPMGGSLGLPLRAVVLEFEERGQGRERGAGGASXXXXXXMATATAAVTKSWRSLRPIDLDV 363
            DNSFSLHWLRNETGLPVVCSAH RE RG  XXXXXXX                             +VP G+EAP+  SLG P+RAVVLE EE+                  +     A T SWRSLRPI LDV
Sbjct: 2518 DNSFSLHWLRNETGLPVVCSAHYREPRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVPVGQEAPVAASLGRPVRAVVLELEEK---------------DGEVEEEEEAAT-SWRSLRPIALDV 2635
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig68.15559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LP20_ECTSI1.970e-2760.33Vacuolar protein sorting-associated protein, putat... [more]
A0A6H5JKL9_9PHAE3.060e-1647.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig68contigL-elsbetiae_contig68:44319..44686 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.6
Seed ortholog evalue2e-24
Seed eggNOG ortholog2880.D8LP20
KEGG koko:K19525
Hectar predicted targeting categoryother localisation
GOsGO:0000045,GO:0006810,GO:0006914,GO:0006996,GO:0007033,GO:0007034,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016043,GO:0016192,GO:0016236,GO:0022607,GO:0030587,GO:0031154,GO:0032502,GO:0044085,GO:0044237,GO:0044248,GO:0045324,GO:0046907,GO:0048856,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051703,GO:0051704,GO:0061919,GO:0070925,GO:0071840,GO:0090702,GO:0099120,GO:1905037
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size369
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816753.427108-CDS-L-elsbetiae_contig68:44318..446841622816753.427108-CDS-L-elsbetiae_contig68:44318..44684Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig68 44319..44684 +
1691683787.6833313-CDS-L-elsbetiae_contig68:44318..446841691683787.6833313-CDS-L-elsbetiae_contig68:44318..44684Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig68 44319..44684 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig68.15559.1prot_L-elsbetiae_contig68.15559.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig68 44319..44684 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig68.15559.1

>prot_L-elsbetiae_contig68.15559.1 ID=prot_L-elsbetiae_contig68.15559.1|Name=mRNA_L-elsbetiae_contig68.15559.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=122bp
GGDNSFSLHWLRNETGLPVVCSAHCRESRGSGSGGGGRGAADGNEDAEAA
LPVRVPAGEEAPMGGSLGLPLRAVVLEFEERGQGRERGAGGASEASAAGM
ATATAAVTKSWRSLRPIDLDVV
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mRNA from alignment at L-elsbetiae_contig68:44319..44686+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig68.15559.1 ID=mRNA_L-elsbetiae_contig68.15559.1|Name=mRNA_L-elsbetiae_contig68.15559.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=368bp|location=Sequence derived from alignment at L-elsbetiae_contig68:44319..44686+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGGCGACAACTCGTTCTCCCTCCACTGGCTCCGCAACGAGACCGGCCT
GCCCGTGGTTTGCTCCGCCCACTGCCGTGAATCTCGAGGCAGTGGCAGCG
GTGGCGGTGGCCGCGGCGCCGCCGACGGGAACGAGGATGCTGAAGCGGCG
CTCCCTGTTCGAGTGCCGGCGGGTGAAGAAGCGCCGATGGGGGGCTCGCT
GGGCCTCCCTTTGCGGGCCGTTGTCCTAGAGTTCGAGGAAAGGGGACAGG
GACGCGAGCGAGGCGCCGGCGGCGCGAGCGAGGCGTCGGCGGCGGGGATG
GCGACGGCGACGGCAGCCGTGACGAAGAGCTGGCGCTCGCTGCGACCGAT
CGACCTGGACGTTGTCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig68:44319..44686+

>mRNA_L-elsbetiae_contig68.15559.1 ID=mRNA_L-elsbetiae_contig68.15559.1|Name=mRNA_L-elsbetiae_contig68.15559.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=732bp|location=Sequence derived from alignment at L-elsbetiae_contig68:44319..44686+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGGCGACAACTCGTTCTCCCTCCACTGGCTCCGCAACGAGACCGGCCT
GCCCGTGGTTTGCTCCGCCCACTGCCGTGAATCTCGAGGCAGTGGCAGCG
GTGGCGGTGGCCGCGGCGCCGCCGACGGGAACGAGGATGCTGAAGCGGCG
CTCCCTGTTCGAGTGCCGGCGGGTGAAGAAGCGCCGATGGGGGGCTCGCT
GGGCCTCCCTTTGCGGGCCGTTGTCCTAGAGTTCGAGGAAAGGGGACAGG
GACGCGAGCGAGGCGCCGGCGGCGCGAGCGAGGCGTCGGCGGCGGGGATG
GCGACGGCGACGGCAGCCGTGACGAAGAGCTGGCGCTCGCTGCGACCGAT
CGACCTGGACGTTGTCGGCGGCGACAACTCGTTCTCCCTCCACTGGCTCC
GCAACGAGACCGGCCTGCCCGTGGTTTGCTCCGCCCACTGCCGTGAATCT
CGAGGCAGTGGCAGCGGTGGCGGTGGCCGCGGCGCCGCCGACGGGAACGA
GGATGCTGAAGCGGCGCTCCCTGTTCGAGTGCCGGCGGGTGAAGAAGCGC
CGATGGGGGGCTCGCTGGGCCTCCCTTTGCGGGCCGTTGTCCTAGAGTTC
GAGGAAAGGGGACAGGGACGCGAGCGAGGCGCCGGCGGCGCGAGCGAGGC
GTCGGCGGCGGGGATGGCGACGGCGACGGCAGCCGTGACGAAGAGCTGGC
GCTCGCTGCGACCGATCGACCTGGACGTTGTC
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