mRNA_L-elsbetiae_contig679.15546.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig679.15546.1 vs. uniprot
Match: D8LBK3_ECTSI (SH3 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBK3_ECTSI) HSP 1 Score: 617 bits (1591), Expect = 1.080e-208 Identity = 337/389 (86.63%), Postives = 356/389 (91.52%), Query Frame = 1 Query: 1 TKISDIQS-KQDSTLDRCQYMSRIHGRFTMPVAAQLMALNELGREELELFVAHIGEAHESSRPKLDRMKELDSFLEDKRVRCHQLVEMLDRMHTPDERLLVVLTCCPRLTDAVEADDQNLFKDIEGAIDPLNLKRARLVVNVLVAEAQAEDASRASRKATREVHADVQRARKALGFLSKAVEKIRSGTIATGMFEELKERLEAAADAAHEEYCDAVKDAKPANEYAEEAVSLMEKAERLYEDLDDLGTGVKDRVKVIHISGG--MDHMEAADTEESLLVSALEVVLTIASNAHELAARAADNARYDMQDALEEVAMAEKIIRRVELEERRARTECDAAENEEEEIRIGGCAFGEWTEDAKLHGIENLEKFRKAGKYRLHLDKTGMRGSE 1158 TKI+DIQS KQ+STL RCQYMSRIHGRFTMPVAAQLMALNELGREELELFVAH+GE SRP+LDRMKELDSFLEDKRVRCHQLV++LDRMHTPDERLL+VLTCC RLTDAVEA+DQ LFKD+E AIDPLNLKRARLVV VLVAEAQAEDASRASRKA REV ADVQRARKALGFLSKAVEKIRSGTIAT MF ELKERLEAAADAAHEEYCDAVKDAKPANEYAE+AVSLME AE+L+E+LD LGTGVKDRVKV+H SGG M ME ADTEESLLVSALEVVL IA+NA ELAARAADNAR+DMQ ALEEVA AEKIIRRVELEERRARTECD AE +EEEI I GC FGEW +DAKLHGIENLEKFRKAGKYRLHLDKTG RG+E Sbjct: 594 TKITDIQSSKQESTLGRCQYMSRIHGRFTMPVAAQLMALNELGREELELFVAHVGEG---SRPRLDRMKELDSFLEDKRVRCHQLVDLLDRMHTPDERLLLVLTCCARLTDAVEAEDQGLFKDLECAIDPLNLKRARLVVGVLVAEAQAEDASRASRKAAREVRADVQRARKALGFLSKAVEKIRSGTIATDMFGELKERLEAAADAAHEEYCDAVKDAKPANEYAEQAVSLMESAEQLFEELDILGTGVKDRVKVVHNSGGGAMGEMEPADTEESLLVSALEVVLAIAANAQELAARAADNARFDMQTALEEVATAEKIIRRVELEERRARTECDEAEEKEEEILIAGCVFGEWADDAKLHGIENLEKFRKAGKYRLHLDKTGTRGTE 979
BLAST of mRNA_L-elsbetiae_contig679.15546.1 vs. uniprot
Match: A0A836CBE7_9STRA (SH3 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBE7_9STRA) HSP 1 Score: 276 bits (705), Expect = 2.370e-79 Identity = 194/493 (39.35%), Postives = 261/493 (52.94%), Query Frame = 1 Query: 28 QDSTLDRCQYMSRIHGRFTMPVAAQLMALNELGREELELFVAHIGEAHESSRPKLDRMKELDSFLEDKRVRCHQLVEMLDRMHTPDERLLVVLTCCPRLTDAVEADDQNLFKDIEGAIDPLNLKRARLVVNVLVAEAQAEDASRASRKATREVHADVQRARKALGFLSKAVEKIRSGTIATGMFEELKERLEAAADAAHEEYCDAVKDAKPANEYAEEAVSLMEKAERLY-------------------------------------------------------------------------------------------EDLDDLGTGVKDRVKVIHI---------SGGMDHMEAADT--EESLLVSALEVVLTIASNAHELAARAADNARYDMQDALEEVAMAEKIIRRVELEERRARTECDAAENEE----------------------EEIRIGGCAFGEWTEDAKLHGIENLEKFRKAGKYRLHLD 1134 +++ ++RC Y+SRI GR TMP+ AQL AL EL +E+LE +VA A ++ +R++E+D+FL+ +RVRC Q+V ++ P+E++L+ +T C RLTDAVEA++Q L+ +E +D LN +RARL + L AEA+AE+ASR SRKA RE HADVQRARKALGF+SKAV KIR G I F++L ERL+AAADAAHEEY DAV+DAKPA +A +A+ ME A EDLD+LGT V DR+KV+ + G D +A E +L+ A+EV L +A+NA+ELA+RA DNAR+DMQ AL EVA AEKII+ VEL+ERRAR ECDA +E C F W+ + + NL KF K G+YR+++D Sbjct: 723 REAAVERCHYVSRIRGRSTMPLPAQLAALEELAQEKLEHWVAVAWPAMGAANV-YNRLREIDNFLDKRRVRCAQVVRLMQEARAPEEKVLIAVTTCARLTDAVEAEEQGLWAALEPQLDALNFERARLCASALAAEARAEEASRGSRKAAREAHADVQRARKALGFISKAVVKIRKGGIKPDKFDQLAERLDAAADAAHEEYRDAVRDAKPAGAHAADALRHMEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELKLCVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDLDELGTAVYDRIKVVEEDEDLGLAADAAGSDDPKARTKKRELALVQEAIEVALQMANNAYELASRACDNARFDMQAALAEVAKAEKIIKHVELKERRARNECDAXXXXXXXXXXXXXXXXXXXXXVQGCPPDEDLPDDCPFATWSAEMRELMETNLAKFVKDGQYRVNID 1214 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig679.15546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig679.15546.1 >prot_L-elsbetiae_contig679.15546.1 ID=prot_L-elsbetiae_contig679.15546.1|Name=mRNA_L-elsbetiae_contig679.15546.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=386bp TKISDIQSKQDSTLDRCQYMSRIHGRFTMPVAAQLMALNELGREELELFVback to top mRNA from alignment at L-elsbetiae_contig679:24652..34431- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig679.15546.1 ID=mRNA_L-elsbetiae_contig679.15546.1|Name=mRNA_L-elsbetiae_contig679.15546.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=9780bp|location=Sequence derived from alignment at L-elsbetiae_contig679:24652..34431- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig679:24652..34431- >mRNA_L-elsbetiae_contig679.15546.1 ID=mRNA_L-elsbetiae_contig679.15546.1|Name=mRNA_L-elsbetiae_contig679.15546.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2316bp|location=Sequence derived from alignment at L-elsbetiae_contig679:24652..34431- (Laminarionema elsbetiae ELsaHSoW15)back to top |