mRNA_L-elsbetiae_contig6787.15541.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6787.15541.1
Unique NamemRNA_L-elsbetiae_contig6787.15541.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6787.15541.1 vs. uniprot
Match: A0A6H5K0L7_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0L7_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 5.770e-22
Identity = 56/121 (46.28%), Postives = 71/121 (58.68%), Query Frame = 1 
Query:   49 SATGNGYFNVHNTNIVSRSARGNRVELRLDSTP---PFMSCTCGYIPRFRVPCREVIAVGKQLNEVERVMDLVDPAYRIENYRQLYEDPSCLVVLPVLSMIDEDKNLYPPRPVEGQSGRPK 402
            SATGN  F V        S  GNRV L    T      MSCTCG+  RF++PC ++IAVG+ LN+ + VM  +DPAY ++ YR LY D    V LPVL  +  D ++ PPR V  Q+GRPK
Sbjct:  235 SATGNCNFTVRKRG----SQYGNRVRLEFGGTDGGVTLMSCTCGFTTRFKIPCCDIIAVGRVLNKSDEVMASIDPAYHLDTYRALYGDSRFEVQLPVLDELTVDPDILPPRWVPNQAGRPK 351
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BLAST of mRNA_L-elsbetiae_contig6787.15541.1 vs. uniprot
Match: A0A6H5KEB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEB7_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.710e-20
Identity = 53/121 (43.80%), Postives = 70/121 (57.85%), Query Frame = 1 
Query:   49 SATGNGYFNVHNTNIVSRSARGNRVELRL--DSTPPFMSCTCGYIPRFRVPCREVIAVGKQLNEVERVMDLVDPAYRIENYRQLYEDPSCLVVLPVLSMIDEDKNLYPPRPVEGQSGRPKK 405
            SATGNG F V        S  GNRV L    D     M+CTCGY   F++PC +++AVG+ L++ + VM  +DPAY ++ YR LY D    V LPV   +  D ++ PP  V  Q+GRPKK
Sbjct:  147 SATGNGNFTVRKLG----SNYGNRVGLEFGTDGVVTRMTCTCGYTTGFKIPCSDIVAVGRALDKSDEVMSSIDPAYHLDTYRALYADSRFEVQLPVPDELAVDVDILPPPWVPNQAGRPKK 263
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BLAST of mRNA_L-elsbetiae_contig6787.15541.1 vs. uniprot
Match: A0A6H5KJU4_9PHAE (MULE domain-containing protein n=6 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJU4_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 3.560e-20
Identity = 54/121 (44.63%), Postives = 71/121 (58.68%), Query Frame = 1 
Query:   49 SATGNGYFNVHNTNIVSRSARGNRVELRL--DSTPPFMSCTCGYIPRFRVPCREVIAVGKQLNEVERVMDLVDPAYRIENYRQLYEDPSCLVVLPVLSMIDEDKNLYPPRPVEGQSGRPKK 405
            SATGNG F V        S  GNRV L    D     M+CTCGY  RF++PC ++IAVG+ L++ + VM  +DPAY ++ YR LY +    V LPV   +  D ++ PP  V  Q+GRPKK
Sbjct:  225 SATGNGNFTVRKLG----SNYGNRVGLEFGTDGVVTRMTCTCGYTTRFKIPCCDIIAVGRALDKSDEVMSSIDPAYHLDTYRALYAESRFEVHLPVPDELAVDVDILPPVWVPNQAGRPKK 341
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BLAST of mRNA_L-elsbetiae_contig6787.15541.1 vs. uniprot
Match: A0A6H5L4I0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I0_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 2.570e-11
Identity = 37/100 (37.00%), Postives = 50/100 (50.00%), Query Frame = 1 
Query:  115 NRVELRL--DSTPPFMSCTCGYIPRFRVPCREVIAVGKQLNEVERVMDLVDPAYRIENYRQLYEDPSCLVVLPVLSMIDEDKNLYPPRPVEGQSGRPKKG 408
            NRV L    D+      CTC + PRF++PCR VIAV K      R ++L+   Y +  YR    D    ++ PV   +  +    PP  VEG +GRPK G
Sbjct:  483 NRVNLTWGDDADGHHYDCTCDFCPRFKIPCRHVIAVAKSTETANRGLELISKGYSLATYRAAANDSRYRIIPPVWDDLTVNPQHRPPLEVEGAAGRPKSG 582
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6787.15541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K0L7_9PHAE5.770e-2246.28MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KEB7_9PHAE1.710e-2043.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJU4_9PHAE3.560e-2044.63MULE domain-containing protein n=6 Tax=Ectocarpus ... [more]
A0A6H5L4I0_9PHAE2.570e-1137.00SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6787contigL-elsbetiae_contig6787:1659..3081 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size419
Cds size417
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6787.15541.1prot_L-elsbetiae_contig6787.15541.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6787 1661..3081 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816751.604434-CDS-L-elsbetiae_contig6787:1660..18541622816751.604434-CDS-L-elsbetiae_contig6787:1660..1854Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6787 1661..1854 -
1691683786.2393324-CDS-L-elsbetiae_contig6787:1660..18541691683786.2393324-CDS-L-elsbetiae_contig6787:1660..1854Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6787 1661..1854 -
1622816751.614291-CDS-L-elsbetiae_contig6787:2400..25851622816751.614291-CDS-L-elsbetiae_contig6787:2400..2585Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6787 2401..2585 -
1691683786.250002-CDS-L-elsbetiae_contig6787:2400..25851691683786.250002-CDS-L-elsbetiae_contig6787:2400..2585Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6787 2401..2585 -
1622816751.6240368-CDS-L-elsbetiae_contig6787:3043..30811622816751.6240368-CDS-L-elsbetiae_contig6787:3043..3081Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6787 3044..3081 -
1691683786.267106-CDS-L-elsbetiae_contig6787:3043..30811691683786.267106-CDS-L-elsbetiae_contig6787:3043..3081Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6787 3044..3081 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6787.15541.1

>prot_L-elsbetiae_contig6787.15541.1 ID=prot_L-elsbetiae_contig6787.15541.1|Name=mRNA_L-elsbetiae_contig6787.15541.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=139bp
RGSSRPSAITRRGLVVSATGNGYFNVHNTNIVSRSARGNRVELRLDSTPP
FMSCTCGYIPRFRVPCREVIAVGKQLNEVERVMDLVDPAYRIENYRQLYE
DPSCLVVLPVLSMIDEDKNLYPPRPVEGQSGRPKKGRDA
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mRNA from alignment at L-elsbetiae_contig6787:1659..3081-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6787.15541.1 ID=mRNA_L-elsbetiae_contig6787.15541.1|Name=mRNA_L-elsbetiae_contig6787.15541.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1423bp|location=Sequence derived from alignment at L-elsbetiae_contig6787:1659..3081- (Laminarionema elsbetiae ELsaHSoW15)
CGAGGCTCTTCAAGACCGAGCGCAATCACTCGAAGGGGGTAAGAGCCACG
CCTTTTTGTACTGGATTTTTTCTCTTGTTGTTTGGGCGGTTTCAAAGGCA
GTTTGCCTTTAGGTTTTACTGCATCATGTTATCTACTGTGTAAGTTGGAC
ATCCGCTTCCCCACAAAAAAGGGTGACCGTCCCTCACACCGAATCCCGTC
GCGTTGCCGTTGAAGGAAGACGATAAAAAACCACAACGAGCAGATGCCCA
CATTTGTTGAAGTTATCCAGTACGCTGCTCGTTTTGGGTCGTCCCTTTGC
AGTTTTCCCCATTCTGCGTGAGAGGTCCGCAGCAACTTGAGATGCACTTG
GTGTGCTTCCTCTCCTACTAAAGCGATATCGTCTTTGCGTAAATTGGAGA
TGACTGATTTATCGCGACCCTAACAGCTGCACTCTCCGCACTCTGACTCT
CCTGGCTTTTTCGTTGTCGTGACGACCATATTTGCACAAAAAACAGCCTC
GTCGTGAGCGCCACCGGGAATGGCTACTTCAACGTCCACAACACGAACAT
CGTAAGCCGGAGCGCCCGGGGAAATCGAGTGGAGCTACGGCTGGACTCCA
CCCCTCCGTTCATGTCCTGCACGTGCGGGTACATCCCGAGGTTCAGGGTG
CCGTGCCGGGAAGTCATCGCCGTCGGCAAACGTAAGACAGCACATGTATC
TTCATGGTTTCTCCCTTTCTTCTAGGAACGAAAGTTGCGTTCTTTCAAAT
GCCGAAGTGCGACTGATCATTTTGATGAAGGTTTTCATGTAGGTTTCCTT
CTCCCGAACAAGTACGATATCTTAGTGGCGATGATCTTACACACCCGGAA
TAGCGCGAAATATCGCATGACTCCTTCTTACAATCCATGCCGTGCACAAG
AGTTGTAATGTACAAGTTGCAACGTCAGGGGTGCTACCCCACCCCCCCAC
CTTTTCGTGGTGCTCGTCGGTTAGGGATTTTAATGGATTTTAATTGTAGA
ATCCGATCACAACAATTGTGCCACCCCGATAAAGTATGCTGCTCTCCTAC
TTTGCGCGTTGTGCCATCACGCGTACATGGCCGACGCATGCACGGCAACG
ATGCATGTTTCAAACGTGTAGCCATTCTTCGGTTGTGTGTGATATTTTGG
GTCGATGTCAACTCACCAACACCCTACTCGGCCCCCTTCCCCCGCCCGCA
TGGTTCTGCTCTTGTTACTACGCGCAGAGCTCAACGAGGTGGAGAGGGTC
ATGGACCTCGTCGACCCGGCATACCGCATCGAAAACTACCGCCAGCTTTA
CGAAGACCCCAGCTGCCTTGTGGTGCTGCCCGTGCTAAGCATGATCGACG
AGGACAAAAATCTATACCCGCCCCGCCCGGTGGAGGGTCAGTCCGGTCGC
CCCAAGAAGGGGAGAGACGCCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6787:1659..3081-

>mRNA_L-elsbetiae_contig6787.15541.1 ID=mRNA_L-elsbetiae_contig6787.15541.1|Name=mRNA_L-elsbetiae_contig6787.15541.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=834bp|location=Sequence derived from alignment at L-elsbetiae_contig6787:1659..3081- (Laminarionema elsbetiae ELsaHSoW15)
CGAGGCTCTTCAAGACCGAGCGCAATCACTCGAAGGGGCGAGGCTCTTCA
AGACCGAGCGCAATCACTCGAAGGGGCCTCGTCGTGAGCGCCACCGGGAA
TGGCTACTTCAACGTCCACAACACGAACATCGTAAGCCGGAGCGCCCGGG
GAAATCGAGTGGAGCTACGGCTGGACTCCACCCCTCCGTTCATGTCCTGC
ACGTGCGGGTACATCCCGAGGTTCAGGGTGCCGTGCCGGGAAGTCATCGC
CGTCGGCAAACCCTCGTCGTGAGCGCCACCGGGAATGGCTACTTCAACGT
CCACAACACGAACATCGTAAGCCGGAGCGCCCGGGGAAATCGAGTGGAGC
TACGGCTGGACTCCACCCCTCCGTTCATGTCCTGCACGTGCGGGTACATC
CCGAGGTTCAGGGTGCCGTGCCGGGAAGTCATCGCCGTCGGCAAACAGCT
CAACGAGGTGGAGAGGGTCATGGACCTCGTCGACCCGGCATACCGCATCG
AAAACTACCGCCAGCTTTACGAAGACCCCAGCTGCCTTGTGGTGCTGCCC
GTGCTAAGCATGATCGACGAGGACAAAAATCTATACCCGCCCCGCCCGGT
GGAGGGTCAGTCCGGTCGCCCCAAGAAGGGGAGAGACGCCAGCTCAACGA
GGTGGAGAGGGTCATGGACCTCGTCGACCCGGCATACCGCATCGAAAACT
ACCGCCAGCTTTACGAAGACCCCAGCTGCCTTGTGGTGCTGCCCGTGCTA
AGCATGATCGACGAGGACAAAAATCTATACCCGCCCCGCCCGGTGGAGGG
TCAGTCCGGTCGCCCCAAGAAGGGGAGAGACGCC
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