mRNA_L-elsbetiae_contig6781.15535.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6781.15535.1
Unique NamemRNA_L-elsbetiae_contig6781.15535.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6781.15535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6781contigL-elsbetiae_contig6781:4702..6147 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-23_002300.1
Exons2
Model size259
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816751.1249568-CDS-L-elsbetiae_contig6781:4702..48821622816751.1249568-CDS-L-elsbetiae_contig6781:4702..4882Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6781 4703..4882 -
1691683785.9116645-CDS-L-elsbetiae_contig6781:4702..48821691683785.9116645-CDS-L-elsbetiae_contig6781:4702..4882Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6781 4703..4882 -
1622816751.1356144-CDS-L-elsbetiae_contig6781:6069..61471622816751.1356144-CDS-L-elsbetiae_contig6781:6069..6147Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6781 6070..6147 -
1691683785.9232519-CDS-L-elsbetiae_contig6781:6069..61471691683785.9232519-CDS-L-elsbetiae_contig6781:6069..6147Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6781 6070..6147 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6781.15535.1prot_L-elsbetiae_contig6781.15535.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6781 4703..6147 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6781.15535.1

>prot_L-elsbetiae_contig6781.15535.1 ID=prot_L-elsbetiae_contig6781.15535.1|Name=mRNA_L-elsbetiae_contig6781.15535.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=86bp
INDTRAGGHTSCQNDNPVGGRRGSLTMALYSEEENEDFRKILAPVQDQIS
EIVAAAKADGLTAEACSGLRTFGSTLPDPLRGKERA
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mRNA from alignment at L-elsbetiae_contig6781:4702..6147-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6781.15535.1 ID=mRNA_L-elsbetiae_contig6781.15535.1|Name=mRNA_L-elsbetiae_contig6781.15535.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1446bp|location=Sequence derived from alignment at L-elsbetiae_contig6781:4702..6147- (Laminarionema elsbetiae ELsaHSoW15)
ATCAACGACACACGCGCCGGAGGGCATACGTCCTGCCAGAACGACAATCC
TGTGGGCGGGCGTCGGGGGAGCCTCACGGTCAGTGCTCTGTGGTTCTAAT
TTCATTGTCATTTCGGTGTGCACATCACATGAGTCAGGCACAACCAGCTG
CCACGTTGGCCCAATGAACGTTTCCCGAACCCCTCAGCGAGCCACCAAAG
ACGTGGCGACTTTACATATGCTTAGGGTACCTTTTGCCTTGTTGTTGTTG
CCTGTTCGCAACCTGCAACATCACATGATAGCATGATCACGGTGGCGTGC
ATACCAATGCAGAATGGAACACATGTCACGGAGTCGTTCGTCAGTAGTCT
GGAGGGTTGGACCAGAGCTCGAGGTCTAACATGAGAGAGCGAGAAAGACT
CTGGTCCATCAGAAAAGCACGTGCTCCTGCATGCACGCGTATCGAGAAGC
TAGTTCTCGACCGTGAGACTGAACGACGACGTACCGAGTTCTGAAGCTGA
TGCCTCGTGGTCTCTGGGTAAAGCCCGGTAGGTGGCTTGGTCAGAAAAGA
TGTAGTTGCTTTGTACTGCTTGCTTGATTGCTCTGGAAAGAAGGTCACTC
AAGAGTTGTGTGTGACGGTGGCTACAAACGCGGGGGGTTCAAGCCGAAAG
GCTACAATCACGCACACCTCTAAAATAGGCATACATCGACACGTAACCCC
CTTCAACCATGGTGGCCGCAACACACATACATGCACCATGTTTTTTTCAA
ATTTAAACAGCAGACACAGCAGCCGTGTGCGCGCTGTGTGTGCGCAGTAC
GCTGTGTGGTCTTAGGTGTGTGGGCTCCGGTGCTCTTTTCGAAGAGCCGA
AGTGTCGCGTCCGTGCAATCCTTTGGCACATCGTATGTTTTGTATTGATT
GACACACGTTTTTCAGCCGGTGACGGTGCCGTATCCACCTGACCTGTCAA
AGCTCCAATGTTGTAGTCTATGTACATATCTACATATGTATCTATGCAGT
CTGCTGCTGACATCTTGACTACTGACGACACACCTGACACGGATCGACTT
GTGAACAGTACTTATACACTCGTTTACTGGTACACGAGTAGACTGTTTGT
CTTGTTAAGCTGTTGTAGTTGTAGGTGTAGGCAAGCTAGAAGTGTATGTG
TACATCAGCACGCACGCTTTCTGCCGCATTGCGTACCAGTCCACATTGTT
CTATTATTGCTGCTGTTCTGAATCTTTGATCCGTCGGCGATGCTCCAAAC
GCAATACACCCGTAGATGGCACTCTACTCGGAGGAAGAGAACGAAGACTT
CCGGAAGATTTTGGCACCAGTTCAGGACCAAATAAGCGAAATCGTCGCGG
CCGCCAAAGCTGACGGCCTGACTGCAGAGGCATGTTCCGGGCTTCGGACG
TTTGGATCGACCTTGCCCGATCCTCTTCGCGGGAAGGAGAGGGCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6781:4702..6147-

>mRNA_L-elsbetiae_contig6781.15535.1 ID=mRNA_L-elsbetiae_contig6781.15535.1|Name=mRNA_L-elsbetiae_contig6781.15535.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=516bp|location=Sequence derived from alignment at L-elsbetiae_contig6781:4702..6147- (Laminarionema elsbetiae ELsaHSoW15)
ATCAACGACACACGCGCCGGAGGGCATACGTCCTGCCAGAACGACAATCC
TGTGGGCGGGCGTCGGGGGAGCCTCACGATCAACGACACACGCGCCGGAG
GGCATACGTCCTGCCAGAACGACAATCCTGTGGGCGGGCGTCGGGGGAGC
CTCACGATGGCACTCTACTCGGAGGAAGAGAACGAAGACTTCCGGAAGAT
TTTGGCACCAGTTCAGGACCAAATAAGCGAAATCGTCGCGGCCGCCAAAG
CTGACGGCCTGACTGCAGAGGCATGTTCCGGGCTTCGGACGTTTGGATCG
ACCTTGCCCGATCCTCTTCGCGGGAAGGAGAGGGCCATGGCACTCTACTC
GGAGGAAGAGAACGAAGACTTCCGGAAGATTTTGGCACCAGTTCAGGACC
AAATAAGCGAAATCGTCGCGGCCGCCAAAGCTGACGGCCTGACTGCAGAG
GCATGTTCCGGGCTTCGGACGTTTGGATCGACCTTGCCCGATCCTCTTCG
CGGGAAGGAGAGGGCC
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