mRNA_L-elsbetiae_contig6777.15531.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6777.15531.1
Unique NamemRNA_L-elsbetiae_contig6777.15531.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6777.15531.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6777contigL-elsbetiae_contig6777:5256..8923 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-20_001290.1
Exons3
Model size1856
Cds size1581
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6777.15531.1prot_L-elsbetiae_contig6777.15531.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6777 5256..7589 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816750.7211716-CDS-L-elsbetiae_contig6777:5255..62931622816750.7211716-CDS-L-elsbetiae_contig6777:5255..6293Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6777 5256..6293 -
1691683785.5666146-CDS-L-elsbetiae_contig6777:5255..62931691683785.5666146-CDS-L-elsbetiae_contig6777:5255..6293Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6777 5256..6293 -
1622816750.7315962-CDS-L-elsbetiae_contig6777:7046..75891622816750.7315962-CDS-L-elsbetiae_contig6777:7046..7589Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6777 7047..7589 -
1691683785.582368-CDS-L-elsbetiae_contig6777:7046..75891691683785.582368-CDS-L-elsbetiae_contig6777:7046..7589Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6777 7047..7589 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816750.7418733-UTR-L-elsbetiae_contig6777:7589..76281622816750.7418733-UTR-L-elsbetiae_contig6777:7589..7628Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6777 7590..7628 -
1691683785.5919886-UTR-L-elsbetiae_contig6777:7589..76281691683785.5919886-UTR-L-elsbetiae_contig6777:7589..7628Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6777 7590..7628 -
1622816750.7536018-UTR-L-elsbetiae_contig6777:8689..89231622816750.7536018-UTR-L-elsbetiae_contig6777:8689..8923Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6777 8690..8923 -
1691683785.6039398-UTR-L-elsbetiae_contig6777:8689..89231691683785.6039398-UTR-L-elsbetiae_contig6777:8689..8923Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6777 8690..8923 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6777.15531.1

>prot_L-elsbetiae_contig6777.15531.1 ID=prot_L-elsbetiae_contig6777.15531.1|Name=mRNA_L-elsbetiae_contig6777.15531.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=527bp
MKGPRCVVSDCQAVASRAEAGSTEGLFCARHAEPDMVNVINWTECTRDGC
DKVPTYGERGTNNREFCAEHALCDMVDVHRKKCTKHGCAKRASHGVKGSG
RRQFCEQHATVDMCDAGQKFCRFSSPMDGDCESIARYGIRGSKTREFCAR
HTPEGMVNMNDKLCIHGDCPKLPTYGKKGSKVRQFCAQHAPEGTVNVAHK
ICAHPSCSKQPTYGVPGSRRREYCRQHALAGMVDMAHKTCAYSPSCNKHP
KYGVEGGSRREFCALHADEGMVHMGNRKCAQRGCTRRPDHGDPNSKRPEY
CEEHAQEDHVRICVVVAAKPLTRDGDGAQAGKRRAKDSSGSGMANLTANL
SALKKLKGARRRRPDGPGGSFLSAAPAAFSDGADALPTPIMLPTPAVLGL
VGMTQIAAAPPPPPQPPQPPSTGPAGAAASFARASQAASLTRASQALMAP
VPPGAMVAHAVAVATSLARASQAASLARASQAATAPAPIAPVAPAIAFPA
SLARANRAAAAPRSVAAAPAAVYPFVG
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mRNA from alignment at L-elsbetiae_contig6777:5256..8923-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6777.15531.1 ID=mRNA_L-elsbetiae_contig6777.15531.1|Name=mRNA_L-elsbetiae_contig6777.15531.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3668bp|location=Sequence derived from alignment at L-elsbetiae_contig6777:5256..8923- (Laminarionema elsbetiae ELsaHSoW15)
CAAGTAGCCAGGGGCCAGCCACCTGCACGGGCACAGACGGGCCACGGAGC
AAACGAAGAGTGGAACGAACACCTCATTCAAATAAAATCCTTCCAGATAG
AAATATATTTTGACGTGGCTGTGAAAGAACTCCGAACCGCTGGAACTGAG
GGTTACGCGCCAACTACTCTTGTAAGGGGGCGCGGGGTCACCCGTCGAGG
GTTGTTGCGCGCGTACGGCATCGAGCGGTGCTAGGTGAGGATGGTGTATG
GTCGCATATGAATCTTGGTCGTTGGTGCAGCTGAATTGTGACCAGTGGCT
GCTTACACACTCTGTGTATGTTCTTCAGAGAGAGCGTCAGAGTCCCAACC
TACACTACTGCTGCTGTATGGTATCTACATGTAGCCTACCTATTGTCCCG
TGGGCAGATATCTAGATACTTACGATGTCGCGCGTGGTAGGCGAGCTTTT
AACTCATCGAGCATATCCAAAGGCGCTCAGGGTGCGTTTTGTTGATACGG
TGAAGAGCAAACTCTCTCTCTCTCCTATTCGATAAGTATTGGAGCTCTTA
CATGACGGATAATATCACCCCCCCTCCACGATACACAACTTGTTGCCAGC
AGACAGCAGTAGTGTCACCACACCACGAATGAAAGAATCTGACCGATCTC
CATATTTTGTGGTTTGAAGCAGCACTCGTAAGGCCCATCGATTTGGTTTG
GCCTCTTCAAAACATGGTCGAAAGGTACTCCGGGGGTATCTCTCCGACAC
TCTTGTTGTAACCTGATATAGCAGTCCGCCGCCCTCGCAAGCACGCCAGC
TGGTTTCATAATTTTACACAACAATGCATGTTCGGTATGTCCTGTGATGA
GATTCAGAGACTAGAGGATATTGTTAGCCGCATGTATTAACTCCTAGGGG
AGACATCAGGAGAGAGAAGGAGAAGTGTCGTGGCCAAAGCGCCTCGAACG
GGGCCCCGTAAGTCGTATCTGGGAGTCTCTCATACCATATCCATCAGGAT
CTGTCTTATCTGCGGATCATGAAACCAGCTTCAACAATCCACTTCTACAC
ACGAACAGTAATGCAAACACATGTTCTACGGTCACTTTTTTAGCACATAC
ATACAAATCGCGAGCGAACCACTACCCACGCACTCGTCCATTCCAAAGGA
TATCTGCAAATTTACCTCATATCCGGACGAGGATTCGGGTAAATATGGGG
TGATAAATACAGAAGCATGCTGTTTCGTCTTCCAGTTATTCCGGTTCCAT
GATTTGTTTGTTTTTGACAGATGTCCCGCCGCGCGTATCAAACAGGCACG
CTCGCAAGAGCTGGCGAGCAAAAGCACAGCAGCAATGAAAGGCCCTCGAT
GCGTCGTGTCGGACTGCCAGGCGGTGGCGAGCCGCGCCGAAGCAGGCAGC
ACCGAGGGGCTCTTCTGCGCCCGGCACGCGGAGCCGGACATGGTAAACGT
CATCAACTGGACTGAGTGCACCCGCGACGGCTGCGACAAGGTCCCGACAT
ACGGGGAGAGGGGGACCAACAACCGGGAGTTCTGCGCGGAGCACGCGCTG
TGCGACATGGTGGACGTGCACCGGAAGAAGTGCACGAAGCACGGCTGCGC
GAAGCGGGCGTCGCACGGTGTCAAGGGCTCCGGGAGGCGGCAGTTCTGCG
AACAACACGCGACGGTCGACATGTGTGACGCCGGGCAAAAATTCTGCCGC
TTCAGCAGCCCGATGGACGGCGACTGCGAGTCGATCGCGCGATACGGCAT
CCGCGGGAGCAAGACCAGGGAGTTCTGCGCCCGCCACACGCCGGAAGGCA
TGGTGAACATGAACGACAAGCTGTGCATCCACGGGGATTGCCCCAAGCTG
CCCACGTACGGGAAGAAGGGGAGTAAGGTGAGAGCACCACATGTAGGGTT
TGGTTTGAGCGCGCGCGCGGGGGCGCGCGGAGGAGGGGATGGGGGGGGTC
GTTTTCGTCCCACGCCGGGTTGGTTTCTTTGTTGCGATTGGTGGGTTGTG
GATGTCTCCCCCCCATGTTTCACGGCATGAAGGCAGGCGAGGTCGCACGG
GTGATGAAAGCACAATGTTTTCGACGAAGTTGAACAGATTATTTGTATCA
TGTGCGCGTAAATATGTACCCCAAGTAGCAGATTCGTTCCAGGGAGTCGA
CATCAGGGAGGGGAAACACGGGCCGGGTTGGTTCGCCGCCGGCTCGTTTA
ACACCCCTGGATATCGGTCCCTCGCCAAACAAAAGACAATTAAAAAAGCA
AACGAAGGTCCCCGGGTATTTTTCAGTACGAAAGATCTCAAGGAGTTACT
ATATTTTTGGCATCGCGTTGTGTTTAACCTGCTGAGGCGAATCGCTTTAC
GTGCTTGTTTTCCGTCTTGTTCGAACTCGGGGTGAAGGACGAGGCCATTC
GAGCCCGCGCTTTGTCAACATTGTGCGCCGCGCGGACGATGTCGCGGTCT
AGGCAAATAGCCCGGTGTACCACGCGGTAGAATACATACGCACGGACGGT
GGGTGTTGTGTGATGCTCGCGGTCGGCAATCAACTCATGCCTAGATATAC
TTGATACCAAAGCACGTACTCAAGCAGCATGCTGAATCCGACACGGTCAT
TTTTTTGTCTCGGTCCCACAACCGCACCAGGTGAGGCAGTTCTGCGCGCA
GCACGCGCCGGAGGGAACCGTGAACGTCGCCCACAAGATCTGCGCGCACC
CTTCGTGCTCCAAGCAGCCCACCTACGGGGTGCCCGGGAGCCGGAGGCGA
GAGTACTGCCGGCAGCACGCGCTCGCCGGGATGGTGGACATGGCGCACAA
GACGTGCGCCTACTCCCCGAGCTGCAACAAGCACCCCAAGTACGGCGTTG
AGGGCGGCAGCCGGCGAGAGTTCTGCGCGCTCCACGCCGACGAGGGCATG
GTGCACATGGGCAACAGGAAGTGCGCCCAGCGGGGGTGCACACGGCGCCC
CGACCACGGCGACCCCAACAGCAAGAGGCCGGAGTACTGCGAGGAGCACG
CCCAGGAGGACCACGTGAGGATCTGCGTGGTGGTCGCGGCCAAGCCGCTC
ACGCGAGACGGGGACGGCGCACAGGCGGGGAAGCGCAGGGCCAAGGATAG
CAGCGGCAGCGGCATGGCCAACCTCACGGCCAACCTGTCGGCGCTGAAGA
AGCTCAAGGGCGCCCGGCGCAGGAGGCCGGACGGCCCCGGTGGTTCGTTC
CTGTCCGCGGCCCCCGCCGCGTTTTCCGACGGCGCCGACGCGCTGCCCAC
CCCCATCATGCTCCCCACCCCGGCCGTCCTCGGCTTGGTTGGGATGACTC
AGATAGCGGCTGCACCGCCGCCGCCGCCGCAGCCGCCCCAGCCGCCGTCG
ACCGGTCCTGCAGGCGCTGCTGCGTCGTTCGCGAGGGCGAGTCAAGCCGC
CTCGTTGACGAGGGCGAGTCAGGCGTTAATGGCGCCGGTTCCTCCGGGGG
CTATGGTGGCTCATGCCGTTGCTGTTGCCACTTCGTTGGCGAGGGCGAGC
CAGGCCGCTTCTTTGGCGCGGGCAAGCCAGGCAGCAACGGCACCGGCACC
GATAGCTCCGGTAGCCCCTGCTATCGCTTTTCCTGCTTCGTTGGCGAGGG
CGAACCGAGCGGCAGCTGCACCGAGATCGGTAGCGGCTGCACCTGCTGCT
GTCTATCCGTTTGTGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6777:5256..8923-

>mRNA_L-elsbetiae_contig6777.15531.1 ID=mRNA_L-elsbetiae_contig6777.15531.1|Name=mRNA_L-elsbetiae_contig6777.15531.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3162bp|location=Sequence derived from alignment at L-elsbetiae_contig6777:5256..8923- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAAGGCCCTCGATGCGTCGTGTCGGACTGCCAGGCGGTGGCGAGCCG
CGCCGAAGCAGGCAGCACCGAGGGGCTCTTCTGCGCCCGGCACGCGGAGC
CGGACATGGTAAACGTCATCAACTGGACTGAGTGCACCCGCGACGGCTGC
GACAAGGTCCCGACATACGGGGAGAGGGGGACCAACAACCGGGAGTTCTG
CGCGGAGCACGCGCTGTGCGACATGGTGGACGTGCACCGGAAGAAGTGCA
CGAAGCACGGCTGCGCGAAGCGGGCGTCGCACGGTGTCAAGGGCTCCGGG
AGGCGGCAGTTCTGCGAACAACACGCGACGGTCGACATGTGTGACGCCGG
GCAAAAATTCTGCCGCTTCAGCAGCCCGATGGACGGCGACTGCGAGTCGA
TCGCGCGATACGGCATCCGCGGGAGCAAGACCAGGGAGTTCTGCGCCCGC
CACACGCCGGAAGGCATGGTGAACATGAACGACAAGCTGTGCATCCACGG
GGATTGCCCCAAGCTGCCCACGTACGGGAAGAAGGGGAGTAAGATGAAAG
GCCCTCGATGCGTCGTGTCGGACTGCCAGGCGGTGGCGAGCCGCGCCGAA
GCAGGCAGCACCGAGGGGCTCTTCTGCGCCCGGCACGCGGAGCCGGACAT
GGTAAACGTCATCAACTGGACTGAGTGCACCCGCGACGGCTGCGACAAGG
TCCCGACATACGGGGAGAGGGGGACCAACAACCGGGAGTTCTGCGCGGAG
CACGCGCTGTGCGACATGGTGGACGTGCACCGGAAGAAGTGCACGAAGCA
CGGCTGCGCGAAGCGGGCGTCGCACGGTGTCAAGGGCTCCGGGAGGCGGC
AGTTCTGCGAACAACACGCGACGGTCGACATGTGTGACGCCGGGCAAAAA
TTCTGCCGCTTCAGCAGCCCGATGGACGGCGACTGCGAGTCGATCGCGCG
ATACGGCATCCGCGGGAGCAAGACCAGGGAGTTCTGCGCCCGCCACACGC
CGGAAGGCATGGTGAACATGAACGACAAGCTGTGCATCCACGGGGATTGC
CCCAAGCTGCCCACGTACGGGAAGAAGGGGAGTAAGGTGAGGCAGTTCTG
CGCGCAGCACGCGCCGGAGGGAACCGTGAACGTCGCCCACAAGATCTGCG
CGCACCCTTCGTGCTCCAAGCAGCCCACCTACGGGGTGCCCGGGAGCCGG
AGGCGAGAGTACTGCCGGCAGCACGCGCTCGCCGGGATGGTGGACATGGC
GCACAAGACGTGCGCCTACTCCCCGAGCTGCAACAAGCACCCCAAGTACG
GCGTTGAGGGCGGCAGCCGGCGAGAGTTCTGCGCGCTCCACGCCGACGAG
GGCATGGTGCACATGGGCAACAGGAAGTGCGCCCAGCGGGGGTGCACACG
GCGCCCCGACCACGGCGACCCCAACAGCAAGAGGCCGGAGTACTGCGAGG
AGCACGCCCAGGAGGACCACGTGAGGATCTGCGTGGTGGTCGCGGCCAAG
CCGCTCACGCGAGACGGGGACGGCGCACAGGCGGGGAAGCGCAGGGCCAA
GGATAGCAGCGGCAGCGGCATGGCCAACCTCACGGCCAACCTGTCGGCGC
TGAAGAAGCTCAAGGGCGCCCGGCGCAGGAGGCCGGACGGCCCCGGTGGT
TCGTTCCTGTCCGCGGCCCCCGCCGCGTTTTCCGACGGCGCCGACGCGCT
GCCCACCCCCATCATGCTCCCCACCCCGGCCGTCCTCGGCTTGGTTGGGA
TGACTCAGATAGCGGCTGCACCGCCGCCGCCGCCGCAGCCGCCCCAGCCG
CCGTCGACCGGTCCTGCAGGCGCTGCTGCGTCGTTCGCGAGGGCGAGTCA
AGCCGCCTCGTTGACGAGGGCGAGTCAGGCGTTAATGGCGCCGGTTCCTC
CGGGGGCTATGGTGGCTCATGCCGTTGCTGTTGCCACTTCGTTGGCGAGG
GCGAGCCAGGCCGCTTCTTTGGCGCGGGCAAGCCAGGCAGCAACGGCACC
GGCACCGATAGCTCCGGTAGCCCCTGCTATCGCTTTTCCTGCTTCGTTGG
CGAGGGCGAACCGAGCGGCAGCTGCACCGAGATCGGTAGCGGCTGCACCT
GCTGCTGTCTATCCGTTTGTGGGGGTGAGGCAGTTCTGCGCGCAGCACGC
GCCGGAGGGAACCGTGAACGTCGCCCACAAGATCTGCGCGCACCCTTCGT
GCTCCAAGCAGCCCACCTACGGGGTGCCCGGGAGCCGGAGGCGAGAGTAC
TGCCGGCAGCACGCGCTCGCCGGGATGGTGGACATGGCGCACAAGACGTG
CGCCTACTCCCCGAGCTGCAACAAGCACCCCAAGTACGGCGTTGAGGGCG
GCAGCCGGCGAGAGTTCTGCGCGCTCCACGCCGACGAGGGCATGGTGCAC
ATGGGCAACAGGAAGTGCGCCCAGCGGGGGTGCACACGGCGCCCCGACCA
CGGCGACCCCAACAGCAAGAGGCCGGAGTACTGCGAGGAGCACGCCCAGG
AGGACCACGTGAGGATCTGCGTGGTGGTCGCGGCCAAGCCGCTCACGCGA
GACGGGGACGGCGCACAGGCGGGGAAGCGCAGGGCCAAGGATAGCAGCGG
CAGCGGCATGGCCAACCTCACGGCCAACCTGTCGGCGCTGAAGAAGCTCA
AGGGCGCCCGGCGCAGGAGGCCGGACGGCCCCGGTGGTTCGTTCCTGTCC
GCGGCCCCCGCCGCGTTTTCCGACGGCGCCGACGCGCTGCCCACCCCCAT
CATGCTCCCCACCCCGGCCGTCCTCGGCTTGGTTGGGATGACTCAGATAG
CGGCTGCACCGCCGCCGCCGCCGCAGCCGCCCCAGCCGCCGTCGACCGGT
CCTGCAGGCGCTGCTGCGTCGTTCGCGAGGGCGAGTCAAGCCGCCTCGTT
GACGAGGGCGAGTCAGGCGTTAATGGCGCCGGTTCCTCCGGGGGCTATGG
TGGCTCATGCCGTTGCTGTTGCCACTTCGTTGGCGAGGGCGAGCCAGGCC
GCTTCTTTGGCGCGGGCAAGCCAGGCAGCAACGGCACCGGCACCGATAGC
TCCGGTAGCCCCTGCTATCGCTTTTCCTGCTTCGTTGGCGAGGGCGAACC
GAGCGGCAGCTGCACCGAGATCGGTAGCGGCTGCACCTGCTGCTGTCTAT
CCGTTTGTGGGG
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