mRNA_L-elsbetiae_contig675.15497.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig675.15497.1
Unique NamemRNA_L-elsbetiae_contig675.15497.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig675.15497.1 vs. uniprot
Match: A0A6H5K5N3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5N3_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.220e-7
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 2 
Query:  125 EFCAQHAQQGMVNVLAKRCGHPSCFKAPSYGVSGS 229
            EFC+QH QQ MVNV++KRCGHP C K PSYG +GS
Sbjct:   23 EFCSQHKQQDMVNVVSKRCGHPGCTKQPSYGRAGS 57
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BLAST of mRNA_L-elsbetiae_contig675.15497.1 vs. uniprot
Match: A0A6H5L8B4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8B4_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 5.570e-6
Identity = 22/37 (59.46%), Postives = 28/37 (75.68%), Query Frame = 2 
Query:  125 EFCAQHAQQGMVNVLAKRCGHPSCFKAPSYGVSGSNK 235
            EFC+QHA+ GM N++ KRCGHP C K  +YG  GS+K
Sbjct:  106 EFCSQHAKPGMTNIMTKRCGHPGCIKHRTYGKDGSSK 142
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig675.15497.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K5N3_9PHAE1.220e-771.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L8B4_9PHAE5.570e-659.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig675contigL-elsbetiae_contig675:16116..18508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.9
Seed ortholog evalue1.8e-07
Seed eggNOG ortholog2880.D7G985
Hectar predicted targeting categoryother localisation
EggNOG OGs29ZCP@1,2RXW0@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1540
Cds size1116
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig675.15497.1prot_L-elsbetiae_contig675.15497.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig675 17123..18238 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816747.3122249-UTR-L-elsbetiae_contig675:16115..163731622816747.3122249-UTR-L-elsbetiae_contig675:16115..16373Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig675 16116..16373 -
1691683783.045593-UTR-L-elsbetiae_contig675:16115..163731691683783.045593-UTR-L-elsbetiae_contig675:16115..16373Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig675 16116..16373 -
1622816747.323444-UTR-L-elsbetiae_contig675:17110..171221622816747.323444-UTR-L-elsbetiae_contig675:17110..17122Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig675 17111..17122 -
1691683783.059977-UTR-L-elsbetiae_contig675:17110..171221691683783.059977-UTR-L-elsbetiae_contig675:17110..17122Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig675 17111..17122 -
1622816747.345772-UTR-L-elsbetiae_contig675:18238..182711622816747.345772-UTR-L-elsbetiae_contig675:18238..18271Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig675 18239..18271 -
1691683783.0791636-UTR-L-elsbetiae_contig675:18238..182711691683783.0791636-UTR-L-elsbetiae_contig675:18238..18271Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig675 18239..18271 -
1622816747.3561385-UTR-L-elsbetiae_contig675:18387..185081622816747.3561385-UTR-L-elsbetiae_contig675:18387..18508Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig675 18388..18508 -
1691683783.088132-UTR-L-elsbetiae_contig675:18387..185081691683783.088132-UTR-L-elsbetiae_contig675:18387..18508Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig675 18388..18508 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816747.3355308-CDS-L-elsbetiae_contig675:17122..182381622816747.3355308-CDS-L-elsbetiae_contig675:17122..18238Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig675 17123..18238 -
1691683783.0688667-CDS-L-elsbetiae_contig675:17122..182381691683783.0688667-CDS-L-elsbetiae_contig675:17122..18238Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig675 17123..18238 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig675.15497.1

>prot_L-elsbetiae_contig675.15497.1 ID=prot_L-elsbetiae_contig675.15497.1|Name=mRNA_L-elsbetiae_contig675.15497.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=372bp
MVNVLAKRCGHPSCFKAPSYGVSGSNKREFCAQHAKEGIVHVHGKRCGHS
SCNKQPSYGVAGSKKTEFCSQHAQEGMVNVLAKRCGHPSCTKQPSYGEAG
CRKPEFCVQHAQQGMVNVLARRCGHPSCTKQPSYGLVGSKKPEFCAQHAQ
QGMVDVCSKMCGHPSCFKAPSFGVIGSNKREFCAQHAPQGMVNVLAKRCG
HPSCFKAPSYGVIGSKKREFCVQHAQEGMINFKPGVRISNSRPGLPRRCR
DSGADMYRSGETSDRQKACPSSTLTGTALSEHTARARKRARQARSGGGDI
QPRVAVAPNLLKTEVLEGMPRDISENSAGVSARCPLTLRATPPFRAPPDS
AAEGAVKAEVGVYEGESRAKG*
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mRNA from alignment at L-elsbetiae_contig675:16116..18508-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig675.15497.1 ID=mRNA_L-elsbetiae_contig675.15497.1|Name=mRNA_L-elsbetiae_contig675.15497.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2393bp|location=Sequence derived from alignment at L-elsbetiae_contig675:16116..18508- (Laminarionema elsbetiae ELsaHSoW15)
GCAGAAAGCCGGAGTTCTGCCGACAGCATGCCCAGCAGAGGATAGTACAT
GTCCTTGCCAAGAGGTTCGGCCACCCGAGCTGCTTCAAAGCCCCGTCATA
CGGTGTGAGCGGCAGCAACAAGCGCGAGTTCTGCGCTCAACATGGCCAAG
GAGGGGATGGTGCATGTCCACGGCAAGAGGTGCGGCCACCCGAGCTGCAA
CAAGCAGCCGTCATATGGTGAAGTCGGCTGCAGAAAGCCCGAGTTCTGCG
CTCAGCATGCCCAGCAGGGGATGGTGAATGTCCTTGCCAAGAGGTGCGGC
CACCCGAGCTGCTTCAAAGCCCCGTCATACGGTGTGAGCGGCAGCAACAA
GCGCGAGTTCTGCGCTCAACATGCCAAGGAGGGGATAGTGCATGTCCACG
GCAAGAGGTGCGGCCACTCGAGCTGCAACAAGCAGCCGTCATACGGTGTG
GCCGGCAGCAAGAAAACCGAGTTCTGCTCCCAGCATGCCCAGGAGGGGAT
GGTGAATGTCCTTGCCAAGAGGTGCGGCCACCCGAGCTGCACCAAGCAGC
CGTCATACGGTGAAGCCGGCTGCAGAAAGCCCGAGTTCTGCGTTCAGCAT
GCCCAGCAGGGGATGGTGAATGTCCTTGCCAGGAGGTGCGGCCACCCGAG
CTGCACCAAGCAGCCGTCTTATGGTTTGGTCGGCAGCAAGAAGCCCGAGT
TCTGCGCCCAGCACGCCCAGCAGGGCATGGTGGATGTCTGTAGCAAGATG
TGCGGCCACCCGAGCTGCTTCAAAGCCCCGTCATTCGGCGTGATCGGCAG
CAACAAGCGCGAGTTCTGCGCTCAGCATGCCCCGCAGGGGATGGTGAATG
TCCTTGCCAAGAGGTGCGGCCACCCGAGCTGCTTCAAAGCCCCGTCATAT
GGTGTGATCGGCAGCAAGAAGCGCGAGTTTTGCGTTCAGCACGCTCAGGA
GGGGATGATAAACTTCAAACCAGGGGTAAGAATCAGCAACAGTAGGCCAG
GCCTCCCGCGCAGGTGCCGGGATTCAGGAGCGGATATGTATCGCAGTGGA
GAAACGAGTGACAGGCAGAAGGCATGCCCCTCATCTACGCTGACAGGGAC
AGCCTTGAGCGAGCACACAGCGCGGGCCAGGAAGCGAGCGCGCCAGGCTC
GATCTGGTGGTGGCGACATTCAACCACGGGTGGCTGTGGCTCCAAACCTC
CTCAAGACAGAGGTACTCGAGGGCATGCCCCGCGATATCTCGGAAAACTC
TGCAGGAGTATCTGCTCGGTGCCCCCTGACACTTCGTGCTACTCCACCTT
TTAGAGCACCCCCAGATTCGGCAGCAGAAGGAGCGGTGAAGGCGGAAGTG
GGAGTCTACGAAGGCGAAAGCCGTGCAAAGGGCTGAAGCAAGTCAAAAGT
AAGTATGCGCGCAGGAACTTGCCACGTCAGTGAGCGCCTTTCTACCCATA
TTTTTATGTGCTGGAAACATATGGTGCTTCGAAACACTTCAAACTTTTGC
CCTGAGCGTACAAGAGTGGACCCTATTCTCCTCAACGACCACCCATCAAC
GTCTGGGTTTGCTCCCAATCAAGCAATGATATCCAAATGCCCTGTCTCGT
GGCTCTTTGAGCGGGGCCACATGTATATTCAATGTTCGACAGTTTCTGCC
CCCTTGGCCCTTTTGCGGATTGAAGAGTAGAGGAACGCGTTTATCAAATG
TTAGACCTATCAACTCATCTGCCACGGCTTGCTCACAAGCTCTGCATTTA
AACAATCTACCGCAACAGCAAGGCTGTGCACTGCTGAGATGAGATGTGTC
GCAGTAAGAGGTCTCACTCTCTCGCCCAGTATCTGGCTCACTCACCATTG
GCAGTTGCTCAGCCATTGCATGTCTCCACGTGTGGTCCTTCGACAGAAAA
CAAACCCTGTTCAGCTTCATCGTAGTGAAATAACGAGAGGCGGCACCCAA
TCCCTGTCGAGACTAAAAACGTACGACGTGCAAGCTAGGCCTGCCTTGTG
CGCCCTCCTGCTCACAAGTTCAGCAGACCTCGGACAGGACTTTCGCTCCA
ATGGTTGCCAGTGGGATTGATTTAAGTTTAACGCCGCGCGGTGATGGTTT
CCTAATCCAGGATAATCGTTCCTCATTCTTGATAGGTACCGTAAGAAGTG
AAGAGAGCAAGACGAGGAGCAGGCGAAACCATTGTCCTACAACAAGAGGG
ACGAGGGCGATCGAGGGAGTAGAGTACGCAGGCGTAGTAGAAGAGGGGCG
TGGGGGATAATCCGATGAGCAGCCGCTGCCAACAGGATGTTTCGCGTGTG
TCGACTCCCTCTGGGTGTTGCTTTTAAGGACATTGGGTCCTCTCCGGTTC
ATGTCGTGGCTGCCTGTTTTTCTTTCTGCCGCCTGGTGCGAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig675:16116..18508-

>mRNA_L-elsbetiae_contig675.15497.1 ID=mRNA_L-elsbetiae_contig675.15497.1|Name=mRNA_L-elsbetiae_contig675.15497.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2232bp|location=Sequence derived from alignment at L-elsbetiae_contig675:16116..18508- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGAATGTCCTTGCCAAGAGGTGCGGCCACCCGAGCTGCTTCAAAGC
CCCGTCATACGGTGTGAGCGGCAGCAACAAGCGCGAGTTCTGCGCTCAAC
ATGCCAAGGAGGGGATAGTGCATGTCCACGGCAAGAGGTGCGGCCACTCG
AGCTGCAACAAGCAGCCGTCATACGGTGTGGCCGGCAGCAAGAAAACCGA
GTTCTGCTCCCAGCATGCCCAGGAGGGGATGGTGAATGTCCTTGCCAAGA
GGTGCGGCCACCCGAGCTGCACCAAGCAGCCGTCATACGGTGAAGCCGGC
TGCAGAAAGCCCGAGTTCTGCGTTCAGCATGCCCAGCAGGGGATGGTGAA
TGTCCTTGCCAGGAGGTGCGGCCACCCGAGCTGCACCAAGCAGCCGTCTT
ATGGTTTGGTCGGCAGCAAGAAGCCCGAGTTCTGCGCCCAGCACGCCCAG
CAGGGCATGGTGGATGTCTGTAGCAAGATGTGCGGCCACCCGAGCTGCTT
CAAAGCCCCGTCATTCGGCGTGATCGGCAGCAACAAGCGCGAGTTCTGCG
CTCAGCATGCCCCGCAGGGGATGGTGAATGTCCTTGCCAAGAGGTGCGGC
CACCCGAGCTGCTTCAAAGCCCCGTCATATGGTGTGATCGGCAGCAAGAA
GCGCGAGTTTTGCGTTCAGCACGCTCAGGAGGGGATGATAAACTTCAAAC
CAGGGGTAAGAATCAGCAACAGTAGGCCAGGCCTCCCGCGCAGGTGCCGG
GATTCAGGAGCGGATATGTATCGCAGTGGAGAAACGAGTGACAGGCAGAA
GGCATGCCCCTCATCTACGCTGACAGGGACAGCCTTGAGCGAGCACACAG
CGCGGGCCAGGAAGCGAGCGCGCCAGGCTCGATCTGGTGGTGGCGACATT
CAACCACGGGTGGCTGTGGCTCCAAACCTCCTCAAGACAGAGGTACTCGA
GGGCATGCCCCGCGATATCTCGGAAAACTCTGCAGGAGTATCTGCTCGGT
GCCCCCTGACACTTCGTGCTACTCCACCTTTTAGAGCACCCCCAGATTCG
GCAGCAGAAGGAGCGGTGAAGGCGGAAGTGGGAGTCTACGAAGGCGAAAG
CCGTGCAAAGGGCTGAATGGTGAATGTCCTTGCCAAGAGGTGCGGCCACC
CGAGCTGCTTCAAAGCCCCGTCATACGGTGTGAGCGGCAGCAACAAGCGC
GAGTTCTGCGCTCAACATGCCAAGGAGGGGATAGTGCATGTCCACGGCAA
GAGGTGCGGCCACTCGAGCTGCAACAAGCAGCCGTCATACGGTGTGGCCG
GCAGCAAGAAAACCGAGTTCTGCTCCCAGCATGCCCAGGAGGGGATGGTG
AATGTCCTTGCCAAGAGGTGCGGCCACCCGAGCTGCACCAAGCAGCCGTC
ATACGGTGAAGCCGGCTGCAGAAAGCCCGAGTTCTGCGTTCAGCATGCCC
AGCAGGGGATGGTGAATGTCCTTGCCAGGAGGTGCGGCCACCCGAGCTGC
ACCAAGCAGCCGTCTTATGGTTTGGTCGGCAGCAAGAAGCCCGAGTTCTG
CGCCCAGCACGCCCAGCAGGGCATGGTGGATGTCTGTAGCAAGATGTGCG
GCCACCCGAGCTGCTTCAAAGCCCCGTCATTCGGCGTGATCGGCAGCAAC
AAGCGCGAGTTCTGCGCTCAGCATGCCCCGCAGGGGATGGTGAATGTCCT
TGCCAAGAGGTGCGGCCACCCGAGCTGCTTCAAAGCCCCGTCATATGGTG
TGATCGGCAGCAAGAAGCGCGAGTTTTGCGTTCAGCACGCTCAGGAGGGG
ATGATAAACTTCAAACCAGGGGTAAGAATCAGCAACAGTAGGCCAGGCCT
CCCGCGCAGGTGCCGGGATTCAGGAGCGGATATGTATCGCAGTGGAGAAA
CGAGTGACAGGCAGAAGGCATGCCCCTCATCTACGCTGACAGGGACAGCC
TTGAGCGAGCACACAGCGCGGGCCAGGAAGCGAGCGCGCCAGGCTCGATC
TGGTGGTGGCGACATTCAACCACGGGTGGCTGTGGCTCCAAACCTCCTCA
AGACAGAGGTACTCGAGGGCATGCCCCGCGATATCTCGGAAAACTCTGCA
GGAGTATCTGCTCGGTGCCCCCTGACACTTCGTGCTACTCCACCTTTTAG
AGCACCCCCAGATTCGGCAGCAGAAGGAGCGGTGAAGGCGGAAGTGGGAG
TCTACGAAGGCGAAAGCCGTGCAAAGGGCTGA
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