mRNA_L-elsbetiae_contig6610.15334.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6610.15334.1
Unique NamemRNA_L-elsbetiae_contig6610.15334.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6610.15334.1 vs. uniprot
Match: D7FS70_ECTSI (Vacuolar protein sorting vps16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS70_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 8.090e-10
Identity = 34/44 (77.27%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:   37 G*DVEL*ATGDIGRTRIPQAEDRYDLYLENKSWEKAAEAAARLK 168
            G D E   TG I   RIPQAEDRYDLYLENKSWEKAAE AARLK
Sbjct:  514 GDDTERYITGYI--ERIPQAEDRYDLYLENKSWEKAAEVAARLK 555
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BLAST of mRNA_L-elsbetiae_contig6610.15334.1 vs. uniprot
Match: A0A6H5KVY1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVY1_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 8.130e-10
Identity = 34/44 (77.27%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:   37 G*DVEL*ATGDIGRTRIPQAEDRYDLYLENKSWEKAAEAAARLK 168
            G D E   TG I   RIPQAEDRYDLYLENKSWEKAAE AARLK
Sbjct:  779 GDDTERYITGYI--ERIPQAEDRYDLYLENKSWEKAAEVAARLK 820
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6610.15334.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FS70_ECTSI8.090e-1077.27Vacuolar protein sorting vps16 n=1 Tax=Ectocarpus ... [more]
A0A6H5KVY1_9PHAE8.130e-1077.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6610contigL-elsbetiae_contig6610:9462..9863 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size168
Cds size114
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6610.15334.1prot_L-elsbetiae_contig6610.15334.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6610 9509..9856 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816732.0378444-UTR-L-elsbetiae_contig6610:9461..95081622816732.0378444-UTR-L-elsbetiae_contig6610:9461..9508Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6610 9462..9508 -
1691683772.2386627-UTR-L-elsbetiae_contig6610:9461..95081691683772.2386627-UTR-L-elsbetiae_contig6610:9461..9508Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6610 9462..9508 -
1622816732.0734675-UTR-L-elsbetiae_contig6610:9856..98631622816732.0734675-UTR-L-elsbetiae_contig6610:9856..9863Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6610 9857..9863 -
1691683772.2707765-UTR-L-elsbetiae_contig6610:9856..98631691683772.2707765-UTR-L-elsbetiae_contig6610:9856..9863Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6610 9857..9863 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816732.0503247-CDS-L-elsbetiae_contig6610:9508..95451622816732.0503247-CDS-L-elsbetiae_contig6610:9508..9545Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6610 9509..9545 -
1691683772.2477329-CDS-L-elsbetiae_contig6610:9508..95451691683772.2477329-CDS-L-elsbetiae_contig6610:9508..9545Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6610 9509..9545 -
1622816732.0609317-CDS-L-elsbetiae_contig6610:9779..98561622816732.0609317-CDS-L-elsbetiae_contig6610:9779..9856Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6610 9780..9856 -
1691683772.2622142-CDS-L-elsbetiae_contig6610:9779..98561691683772.2622142-CDS-L-elsbetiae_contig6610:9779..9856Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6610 9780..9856 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6610.15334.1

>prot_L-elsbetiae_contig6610.15334.1 ID=prot_L-elsbetiae_contig6610.15334.1|Name=mRNA_L-elsbetiae_contig6610.15334.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=38bp
MVCERTAFRVARTWSFEPQVTSAGREYLRRKTGTTCT*
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mRNA from alignment at L-elsbetiae_contig6610:9462..9863-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6610.15334.1 ID=mRNA_L-elsbetiae_contig6610.15334.1|Name=mRNA_L-elsbetiae_contig6610.15334.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=402bp|location=Sequence derived from alignment at L-elsbetiae_contig6610:9462..9863- (Laminarionema elsbetiae ELsaHSoW15)
GGATGCGATGGTGTGTGAGCGTACAGCATTTCGCGTGGCTAGGACGTGGA
GCTTTGAGCCACAGGTGACATCGGCAGGACGAGAGTGAGTTACCACCCGC
ATGGAGCCTCACACCTCAACATCCATCCACAACAGGACCGATACATACCT
CTCCTGTGTAATTATTGATGATTTACAAAAAGTGGCCGCAGGCGATTGAC
CCCTACGCGCAGCCACCCTTGAGTGAAGCAAGCGCCTGTATGACGCAGAA
AGGAATGTTGTATATGGTACACAATACACGCCTCAACAGAATAATCGTTT
TGTCGTCACCCGGAGCAGATACCTCAGGCGGAAGACCGGTACGACCTGTA
CCTAGAGAACAAGAGCTGGGAGAAGGCCGCCGAGGCGGCGGCGAGACTTA
AG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6610:9462..9863-

>mRNA_L-elsbetiae_contig6610.15334.1 ID=mRNA_L-elsbetiae_contig6610.15334.1|Name=mRNA_L-elsbetiae_contig6610.15334.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=228bp|location=Sequence derived from alignment at L-elsbetiae_contig6610:9462..9863- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGTGTGAGCGTACAGCATTTCGCGTGGCTAGGACGTGGAGCTTTGA
GCCACAGGTGACATCGGCAGGACGAGAATGGTGTGTGAGCGTACAGCATT
TCGCGTGGCTAGGACGTGGAGCTTTGAGCCACAGGTGACATCGGCAGGAC
GAGAATACCTCAGGCGGAAGACCGGTACGACCTGTACCTAGATACCTCAG
GCGGAAGACCGGTACGACCTGTACCTAG
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