mRNA_L-elsbetiae_contig6584.15289.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6584.15289.1
Unique NamemRNA_L-elsbetiae_contig6584.15289.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6584.15289.1 vs. uniprot
Match: D7FH82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH82_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 1.790e-20
Identity = 45/82 (54.88%), Postives = 59/82 (71.95%), Query Frame = 1 
Query:    1 VWRHCELARHGLSSWSGPVNAERAMAWAILAYVYLFCGSTDMFQEYLALPDRYLSESVEHKSSEMLPVGFAETVDYRMTVKM 246
            V R+ ELAR  + S+SGPV    A AW ILA++YLF G TDMFQEY+A  + + S S  + S+E+LPVG+AE V +RMTV+M
Sbjct:   96 VARYSELARDAVESYSGPVTTGVAKAWVILAFLYLFHGDTDMFQEYMARSEAFFSASGAYGSTEVLPVGYAEVVSHRMTVRM 177
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BLAST of mRNA_L-elsbetiae_contig6584.15289.1 vs. uniprot
Match: D8LU24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU24_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 4.530e-19
Identity = 43/82 (52.44%), Postives = 55/82 (67.07%), Query Frame = 1 
Query:    1 VWRHCELARHGLSSWSGPVNAERAMAWAILAYVYLFCGSTDMFQEYLALPDRYLSESVEHKSSEMLPVGFAETVDYRMTVKM 246
            V  +  LAR  L +++GPVNAE AMAWAIL Y Y F G T  FQEYL L D +L++S+E  S+ +LP GFAE +    TVK+
Sbjct:  134 VANYSRLARDALDAYTGPVNAEVAMAWAILGYFYGFMGDTATFQEYLGLADSFLTDSIERGSTNILPAGFAEIIRLEQTVKV 215
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BLAST of mRNA_L-elsbetiae_contig6584.15289.1 vs. uniprot
Match: D8LU26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU26_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 5.470e-19
Identity = 41/79 (51.90%), Postives = 57/79 (72.15%), Query Frame = 1 
Query:   10 HCELARHGLSSWSGPVNAERAMAWAILAYVYLFCGSTDMFQEYLALPDRYLSESVEHKSSEMLPVGFAETVDYRMTVKM 246
            +  LAR  L +++GPV+AE A AWAILAY+Y + G T  F+EYL L D +L+ S+E  S++MLP GFAE + Y+ TV+M
Sbjct:    8 YSRLARGALDAYTGPVDAEVAKAWAILAYLYGYMGDTAEFEEYLELADAFLTASIEQGSTDMLPAGFAEMIHYKQTVRM 86
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BLAST of mRNA_L-elsbetiae_contig6584.15289.1 vs. uniprot
Match: D8LU27_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU27_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.870e-18
Identity = 41/79 (51.90%), Postives = 57/79 (72.15%), Query Frame = 1 
Query:   10 HCELARHGLSSWSGPVNAERAMAWAILAYVYLFCGSTDMFQEYLALPDRYLSESVEHKSSEMLPVGFAETVDYRMTVKM 246
            +  LAR  L +++GPV+AE A AWAILAY+Y + G T  F+EYL L D +L  S+E  S++MLP GFAE V+++ TVK+
Sbjct:  207 YSRLARGALDAYTGPVDAEVAKAWAILAYLYGYMGDTAKFEEYLELSDSFLIASIEQGSTDMLPAGFAEMVNHKQTVKV 285
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BLAST of mRNA_L-elsbetiae_contig6584.15289.1 vs. uniprot
Match: D7FH84_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH84_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 3.240e-18
Identity = 43/82 (52.44%), Postives = 53/82 (64.63%), Query Frame = 1 
Query:    1 VWRHCELARHGLSSWSGPVNAERAMAWAILAYVYLFCGSTDMFQEYLALPDRYLSESVEHKSSEMLPVGFAETVDYRMTVKM 246
            V R  ELAR  +   SGPV    A AW ILAY+YLF G TD+FQEY+A  + + S S  +  +E LPVGF E V +RMTV+M
Sbjct:   58 VARSSELARDAVERHSGPVTTGVAKAWVILAYLYLFHGDTDVFQEYMARSEAFFSASGAYGFTEDLPVGFPEVVSHRMTVQM 139
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BLAST of mRNA_L-elsbetiae_contig6584.15289.1 vs. uniprot
Match: D8LU22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU22_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 1.270e-15
Identity = 40/80 (50.00%), Postives = 50/80 (62.50%), Query Frame = 1 
Query:    1 VWRHCELARHGLSSWSGPVNAERAMAWAILAYVYLFCGSTDMFQEYLALPDRYLSESVEHKSSEMLPVGFAETVDYRMTV 240
            V  +  LAR  L +++GPV+AE A AWAIL Y Y F G T  F EYL L   +L  S+E  S+++LP GFAE V YR  V
Sbjct:   96 VANYSRLARDALDAYTGPVDAEVAKAWAILGYFYGFMGDTVQFLEYLKLSGSFLVASIEQGSTDVLPAGFAEIVQYREAV 175
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BLAST of mRNA_L-elsbetiae_contig6584.15289.1 vs. uniprot
Match: D8LU16_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU16_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 1.640e-8
Identity = 28/69 (40.58%), Postives = 41/69 (59.42%), Query Frame = 1 
Query:   52 PVNAERAM--AWAILAYVYLFCGSTDMFQEYLALPDRYLSESVEHKSSEMLPVGFAETVDYRMTVKMCC 252
            P+N       AWAI+ Y+Y F G +  +Q YLAL + +L  S+E +S++ LPVGFAE V ++      C
Sbjct:  194 PMNPSTCTFWAWAIMGYLYGFMGDSARYQHYLALSESFLRSSMEERSTDNLPVGFAEVVKFKEFADSSC 262
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6584.15289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FH82_ECTSI1.790e-2054.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LU24_ECTSI4.530e-1952.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LU26_ECTSI5.470e-1951.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LU27_ECTSI1.870e-1851.90Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D7FH84_ECTSI3.240e-1852.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LU22_ECTSI1.270e-1550.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LU16_ECTSI1.640e-840.58Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6584contigL-elsbetiae_contig6584:3965..5642 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size254
Cds size252
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6584.15289.1prot_L-elsbetiae_contig6584.15289.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6584 3965..5641 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816727.344765-CDS-L-elsbetiae_contig6584:3964..40381622816727.344765-CDS-L-elsbetiae_contig6584:3964..4038Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6584 3965..4038 +
1691683768.9995284-CDS-L-elsbetiae_contig6584:3964..40381691683768.9995284-CDS-L-elsbetiae_contig6584:3964..4038Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6584 3965..4038 +
1622816727.3563988-CDS-L-elsbetiae_contig6584:4241..42871622816727.3563988-CDS-L-elsbetiae_contig6584:4241..4287Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6584 4242..4287 +
1691683769.0094178-CDS-L-elsbetiae_contig6584:4241..42871691683769.0094178-CDS-L-elsbetiae_contig6584:4241..4287Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6584 4242..4287 +
1622816727.3672817-CDS-L-elsbetiae_contig6584:4516..46001622816727.3672817-CDS-L-elsbetiae_contig6584:4516..4600Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6584 4517..4600 +
1691683769.0181549-CDS-L-elsbetiae_contig6584:4516..46001691683769.0181549-CDS-L-elsbetiae_contig6584:4516..4600Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6584 4517..4600 +
1622816727.3785589-CDS-L-elsbetiae_contig6584:5593..56411622816727.3785589-CDS-L-elsbetiae_contig6584:5593..5641Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6584 5594..5641 +
1691683769.026627-CDS-L-elsbetiae_contig6584:5593..56411691683769.026627-CDS-L-elsbetiae_contig6584:5593..5641Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6584 5594..5641 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6584.15289.1

>prot_L-elsbetiae_contig6584.15289.1 ID=prot_L-elsbetiae_contig6584.15289.1|Name=mRNA_L-elsbetiae_contig6584.15289.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=84bp
VWRHCELARHGLSSWSGPVNAERAMAWAILAYVYLFCGSTDMFQEYLALP
DRYLSESVEHKSSEMLPVGFAETVDYRMTVKMCC
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mRNA from alignment at L-elsbetiae_contig6584:3965..5642+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6584.15289.1 ID=mRNA_L-elsbetiae_contig6584.15289.1|Name=mRNA_L-elsbetiae_contig6584.15289.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1678bp|location=Sequence derived from alignment at L-elsbetiae_contig6584:3965..5642+ (Laminarionema elsbetiae ELsaHSoW15)
GTTTGGAGGCACTGCGAACTTGCGAGACATGGGCTAAGCAGCTGGTCGGG
TCCGGTGAACGCCGAGAGAGCAATGTGAGGCAGTGAGGAGTTAGTAGGGT
ACGTAGGCTGTTGGTCGTTTTTTCCGCACCCGTTTGCAATGATTCTAGCG
TTTTTCATTATTGCCACTGCATAGACAATGGCCGACAGTTATTCGGCTAG
GCACATCGCCATTGCCGGGCATAATATCGCCTCCCATGGACTCATGTTTG
AACCTCCTTACTTTCATTTCTACCTAGGGCCTGGGCGATTCTGGCATACG
TGTATCTCTTCTGCGGGAGCACGGTGAGTTGTTTTCCGCTGTGGTGAATG
ATGAGATGCCTGTTTTATACCCCCCGACCCTTTTGTAGCCCATGTCTTTG
GCGAAACAGTAGCCTCGGCGCAACAAGCCGCAAACTTACCGTGCGGATCG
CTTGCTCACGTCGACATCCGCTACATACCGACCTCACCCGCTAGAATCTC
ACTCGATTGTTCGGATCTTGTCGATCGGATTCGAATTTTACCTCGCCTTC
AGGACATGTTTCAAGAATACCTGGCGCTTCCAGACCGTTATTTGAGTGAA
TCCGTCGAGCACAAGTCATCCGAGATGCTCCCTGTGGTGAGAGTACACAT
ATCTGCATACTTCCTCTGTTCCATAAGTTTGGGAGGTTTTGGGCGCTTAT
TCGTCTGGGTATGCCAATGTTGACGATCATGCTGTAGTTGGTTCGTTGGA
AAGACAAACCGCGAACGAAGCTGATGAAAAAAAAACGTGTTCGTTATCCA
TACTAATACTAGTCAAAATATGCCCCATTTTGGCACTTTTTCATCCTTTC
ACATCCAATATTGGCCGATTTTGGATGTCTTCACGGCAAATCGTTCTGAT
TTCATGACTAGACCTTCTTGGCAGGCGTGTGCGTAGGGTCGCTCCATTAT
GATATCCAAAATCAATTCCCAGTTCTCCATGATTTTCTGGCGAGAACGGC
AAAATACGGCCACTTTTGGGCCGACCCATGTTTTAGCGGCCGATCGACCG
CATGAAACAACCCCCAGCTGGGAAAAAAAAAATGATTTTGACTAAAACAA
AACGCCGGGGAATGCATCCAAAATTTCGAAAAAAAGATCGGACACCGTCA
GCGGTCGTACAAACATGACTTCCCAGACCTATGGGACAGAGGAAGATGTA
CTGCTGTTTCATCTTCGGCATTTTTTTCAGTTGGACGCGCAATGACACCA
CCCGTTGGGGTTGAATGAGTGGGCTTCTGAAGGGTTCAGGGTAGCTCGGG
TCGTCCTTCTCTGTTCCTCCACCAGTTTCCCAAGCTGTGCTGCTGTACTG
ACCGACACCTTCGCCGCGTATGCGCTGCTATTTAGTGTGTGTTGCGACTT
CTTGAGGTTGACTCGGGTCGTCCACCGAAATGTTTTCGCTGGTTGTCTGC
ACAAGCTTAGATGCGCCAGCGGAAGAGAATCATTGAAAAATATCACGTCG
GTACCCCGCTGCCGTAATCAGTAAATTCGCCGAGATTTGTACATGACATA
CATATATTTCTACCATCTAGGGTTCGGCTCGTTTGGCGTCAACTTACTGT
CGCTACTTTCACGCCCGTGTCCGGACCAGGGATTCGCCGAGACAGTCGAT
TATAGGATGACCGTCAAGATGTGCTGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6584:3965..5642+

>mRNA_L-elsbetiae_contig6584.15289.1 ID=mRNA_L-elsbetiae_contig6584.15289.1|Name=mRNA_L-elsbetiae_contig6584.15289.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=504bp|location=Sequence derived from alignment at L-elsbetiae_contig6584:3965..5642+ (Laminarionema elsbetiae ELsaHSoW15)
GTTTGGAGGCACTGCGAACTTGCGAGACATGGGCTAAGCAGCTGGTCGGG
TCCGGTGAACGCCGAGAGAGCAATGTTTGGAGGCACTGCGAACTTGCGAG
ACATGGGCTAAGCAGCTGGTCGGGTCCGGTGAACGCCGAGAGAGCAATGG
CCTGGGCGATTCTGGCATACGTGTATCTCTTCTGCGGGAGCACGGGCCTG
GGCGATTCTGGCATACGTGTATCTCTTCTGCGGGAGCACGGACATGTTTC
AAGAATACCTGGCGCTTCCAGACCGTTATTTGAGTGAATCCGTCGAGCAC
AAGTCATCCGAGATGCTCCCTGTGGACATGTTTCAAGAATACCTGGCGCT
TCCAGACCGTTATTTGAGTGAATCCGTCGAGCACAAGTCATCCGAGATGC
TCCCTGTGGGATTCGCCGAGACAGTCGATTATAGGATGACCGTCAAGATG
TGCTGTGGATTCGCCGAGACAGTCGATTATAGGATGACCGTCAAGATGTG
CTGT
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