mRNA_L-elsbetiae_contig6556.15251.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6556.15251.1
Unique NamemRNA_L-elsbetiae_contig6556.15251.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6556.15251.1 vs. uniprot
Match: A0A6H5KT07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT07_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 7.140e-32
Identity = 75/94 (79.79%), Postives = 82/94 (87.23%), Query Frame = 1 
Query:    1 AAVDSHSLTQGAMKLVYLLAIQVATSGEESAGRGA--SASSHSSARPPSRAPQLVRARSGPATLSHAVFEMLYVELRGVLGGLRQARTARARDR 276
            AA +SHSLTQGAMKLVYLLAIQVATSGEE+ G G+  SAS HS A  P RAPQLVRARSGPATLSHAVFEMLYV+LR VLGGLR+AR +RAR+R
Sbjct: 3473 AAAESHSLTQGAMKLVYLLAIQVATSGEEAGGSGSGISASDHS-APGPFRAPQLVRARSGPATLSHAVFEMLYVQLRNVLGGLRKARASRARER 3565
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BLAST of mRNA_L-elsbetiae_contig6556.15251.1 vs. uniprot
Match: D8LCZ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCZ5_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 1.160e-25
Identity = 66/80 (82.50%), Postives = 70/80 (87.50%), Query Frame = 1 
Query:    1 AAVDSHSLTQGAMKLVYLLAIQVATSGEESAGRGA--SASSHSSARPPSRAPQLVRARSGPATLSHAVFEMLYVELRGVL 234
            AA +SHSLTQGAMKLVYLLAIQVATSGEE+AG G+  SAS HS A  P RAPQLVRARSGPATLSHAVFEMLYV+LR VL
Sbjct: 3162 AAAESHSLTQGAMKLVYLLAIQVATSGEEAAGGGSGISASDHS-APGPFRAPQLVRARSGPATLSHAVFEMLYVQLRNVL 3240
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BLAST of mRNA_L-elsbetiae_contig6556.15251.1 vs. uniprot
Match: A0A7S3UZV6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UZV6_HETAK)

HSP 1 Score: 51.2 bits (121), Expect = 3.390e-6
Identity = 41/94 (43.62%), Postives = 51/94 (54.26%), Query Frame = 1 
Query:   22 LTQGAMKLVYLLAIQVATSGE-----ESAGRGAS--------ASSHSSARPPSRAPQLVRARSGPATLSHAVFEMLYVELRGVLGGLRQARTAR 264
            LT+ AMKL+YLLA+QVATSGE      S  R  S         +S +   PP  A  L R  SGPATLS +VF +LY +L   L     + +AR
Sbjct:    1 LTRAAMKLLYLLALQVATSGEGTRNSSSLQRSTSWGSMGFGQVTSLAGPPPPPAALTLQRTMSGPATLSQSVFTLLYTQLSSALEACTPSLSAR 94
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6556.15251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KT07_9PHAE7.140e-3279.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCZ5_ECTSI1.160e-2582.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3UZV6_HETAK3.390e-643.62Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6556contigL-elsbetiae_contig6556:3707..4376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.8
Seed ortholog evalue7e-22
Seed eggNOG ortholog2880.D8LCZ5
KEGG koko:K10614
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
EC2.3.2.26
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons2
Model size276
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816723.327091-CDS-L-elsbetiae_contig6556:3706..39161622816723.327091-CDS-L-elsbetiae_contig6556:3706..3916Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6556 3707..3916 -
1691683766.0641587-CDS-L-elsbetiae_contig6556:3706..39161691683766.0641587-CDS-L-elsbetiae_contig6556:3706..3916Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6556 3707..3916 -
1622816723.3428738-CDS-L-elsbetiae_contig6556:4310..43761622816723.3428738-CDS-L-elsbetiae_contig6556:4310..4376Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6556 4311..4376 -
1691683766.0806224-CDS-L-elsbetiae_contig6556:4310..43761691683766.0806224-CDS-L-elsbetiae_contig6556:4310..4376Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6556 4311..4376 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6556.15251.1prot_L-elsbetiae_contig6556.15251.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6556 3707..4376 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6556.15251.1

>prot_L-elsbetiae_contig6556.15251.1 ID=prot_L-elsbetiae_contig6556.15251.1|Name=mRNA_L-elsbetiae_contig6556.15251.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
AAVDSHSLTQGAMKLVYLLAIQVATSGEESAGRGASASSHSSARPPSRAP
QLVRARSGPATLSHAVFEMLYVELRGVLGGLRQARTARARDR
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mRNA from alignment at L-elsbetiae_contig6556:3707..4376-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6556.15251.1 ID=mRNA_L-elsbetiae_contig6556.15251.1|Name=mRNA_L-elsbetiae_contig6556.15251.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=670bp|location=Sequence derived from alignment at L-elsbetiae_contig6556:3707..4376- (Laminarionema elsbetiae ELsaHSoW15)
GCGGCGGTGGACTCCCACTCGTTGACGCAGGGTGCCATGAAGCTGGTTTA
CTTGCTGGCTATCCAGGTGCGGGCACGCGCGCGTTGTTGTCGCGGCCTCT
GACAATATGTAGAGGCGAGAAGGAGCCAGTCAGTCCTCCGTCAATTGAAT
TGCCCGATCCTCCCCCAAGAATTGCGGATATGGCTGAGTGCAGGCCAGAA
GTCGATCTTGTTGCCCTTTGGAGGGAAGAAGAAAAATAATTTAACCCAAT
ACATAGGAGTAGCTTTTTCTACACCTGAGTTTCCCCCTCTCGGGGAATAA
ATGTTTGCCAAACTCTTGAAGAATCCACTCTGTGTCCCCAGCACAAAACT
CAAGGCAGGCGTTAGTACCGCGCACCAGAGGGCATCTTTCACGCGCACAC
TTCCTGCACCTTGTAGATCCCTCAATGTTTTTGCCGCCTGGTTTTTCCGT
TTTTGTACAGGTGGCGACGTCCGGAGAGGAATCAGCAGGCAGGGGCGCCT
CAGCTTCGAGTCACTCGTCCGCGAGGCCCCCCTCCAGAGCACCGCAGCTG
GTGCGCGCGCGCTCCGGGCCGGCCACCCTGTCGCACGCGGTCTTCGAGAT
GCTGTACGTGGAGCTAAGAGGCGTTTTGGGGGGGCTGCGTCAGGCCAGGA
CGGCGAGGGCTAGGGACCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6556:3707..4376-

>mRNA_L-elsbetiae_contig6556.15251.1 ID=mRNA_L-elsbetiae_contig6556.15251.1|Name=mRNA_L-elsbetiae_contig6556.15251.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig6556:3707..4376- (Laminarionema elsbetiae ELsaHSoW15)
GCGGCGGTGGACTCCCACTCGTTGACGCAGGGTGCCATGAAGCTGGTTTA
CTTGCTGGCTATCCAGGCGGCGGTGGACTCCCACTCGTTGACGCAGGGTG
CCATGAAGCTGGTTTACTTGCTGGCTATCCAGGTGGCGACGTCCGGAGAG
GAATCAGCAGGCAGGGGCGCCTCAGCTTCGAGTCACTCGTCCGCGAGGCC
CCCCTCCAGAGCACCGCAGCTGGTGCGCGCGCGCTCCGGGCCGGCCACCC
TGTCGCACGCGGTCTTCGAGATGCTGTACGTGGAGCTAAGAGGCGTTTTG
GGGGGGCTGCGTCAGGCCAGGACGGCGAGGGCTAGGGACCGCGTGGCGAC
GTCCGGAGAGGAATCAGCAGGCAGGGGCGCCTCAGCTTCGAGTCACTCGT
CCGCGAGGCCCCCCTCCAGAGCACCGCAGCTGGTGCGCGCGCGCTCCGGG
CCGGCCACCCTGTCGCACGCGGTCTTCGAGATGCTGTACGTGGAGCTAAG
AGGCGTTTTGGGGGGGCTGCGTCAGGCCAGGACGGCGAGGGCTAGGGACC
GC
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