mRNA_L-elsbetiae_contig6536.15235.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6536.15235.1
Unique NamemRNA_L-elsbetiae_contig6536.15235.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6536.15235.1 vs. uniprot
Match: D8LD93_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD93_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 3.510e-8
Identity = 44/106 (41.51%), Postives = 56/106 (52.83%), Query Frame = 1 
Query:   88 IDSLRVGDSLLQLL--GKSAARGTEDSSEEETQNEAPVDEAERDQATAAAVAVSPKTVSFKSQVRVVLVPCRRELHSLNAQLWWGADDYGDFRREYIAAVRAAAAA 399
            I+SL + DSLL+L+  G+ AA   E           P     R              V F  QVRVVLVP R+EL  L  +LWWG +DY +FRRE++ A+R AAAA
Sbjct:   48 INSLSIDDSLLRLVATGRPAASDEEXXXXXXXXPAVPSSSVRRPVVDEIGAIRVGSNVRFNHQVRVVLVPSRKELRPLIEELWWGTNDYVEFRREFVQAMREAAAA 153
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BLAST of mRNA_L-elsbetiae_contig6536.15235.1 vs. uniprot
Match: A0A6H5KW42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW42_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 7.820e-7
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:  253 VSFKSQVRVVLVPCRRELHSLNAQLWWGADDYGDFRREYIAAVRAAAA 396
            V F  QVRVVLVP R+EL  L  +LWWG +DY +FRRE++ A+R AAA
Sbjct:  111 VRFNHQVRVVLVPSRKELRPLMEELWWGTNDYVEFRREFVQAMREAAA 158
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6536.15235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LD93_ECTSI3.510e-841.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KW42_9PHAE7.820e-760.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6536contigL-elsbetiae_contig6536:3214..8034 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-25_002060.1
Exons2
Model size1299
Cds size660
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6536.15235.1prot_L-elsbetiae_contig6536.15235.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6536 7249..7908 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816721.7546732-UTR-L-elsbetiae_contig6536:3213..35721622816721.7546732-UTR-L-elsbetiae_contig6536:3213..3572Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6536 3214..3572 +
1691683764.9049206-UTR-L-elsbetiae_contig6536:3213..35721691683764.9049206-UTR-L-elsbetiae_contig6536:3213..3572Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6536 3214..3572 +
1622816721.7663817-UTR-L-elsbetiae_contig6536:7094..72481622816721.7663817-UTR-L-elsbetiae_contig6536:7094..7248Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6536 7095..7248 +
1691683764.9152582-UTR-L-elsbetiae_contig6536:7094..72481691683764.9152582-UTR-L-elsbetiae_contig6536:7094..7248Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6536 7095..7248 +
1622816721.794964-UTR-L-elsbetiae_contig6536:7908..80341622816721.794964-UTR-L-elsbetiae_contig6536:7908..8034Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6536 7909..8034 +
1691683764.9349136-UTR-L-elsbetiae_contig6536:7908..80341691683764.9349136-UTR-L-elsbetiae_contig6536:7908..8034Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6536 7909..8034 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816721.7798846-CDS-L-elsbetiae_contig6536:7248..79081622816721.7798846-CDS-L-elsbetiae_contig6536:7248..7908Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6536 7249..7908 +
1691683764.9260883-CDS-L-elsbetiae_contig6536:7248..79081691683764.9260883-CDS-L-elsbetiae_contig6536:7248..7908Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6536 7249..7908 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6536.15235.1

>prot_L-elsbetiae_contig6536.15235.1 ID=prot_L-elsbetiae_contig6536.15235.1|Name=mRNA_L-elsbetiae_contig6536.15235.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=220bp
MPPTPPRPPSPLCPASLSTPLPPTNAEAAAAAAKATVGTSSGHRQHKQAA
GGVDGGGVLLTTSISPEALAAAARAGALPASPAPSPPLLNGHGFDGGGRK
EGEEEAPALSRPPRTPAGAATARSSCIRAKWTLFAGAAAAKAAAEESEES
GYRTMSMSSVSDNAFGDCDGCDSDSDGDGDNGGGYESGEAGDGRASYRGG
KRLVASPGKEDNFLLRGRA*
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mRNA from alignment at L-elsbetiae_contig6536:3214..8034+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6536.15235.1 ID=mRNA_L-elsbetiae_contig6536.15235.1|Name=mRNA_L-elsbetiae_contig6536.15235.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4821bp|location=Sequence derived from alignment at L-elsbetiae_contig6536:3214..8034+ (Laminarionema elsbetiae ELsaHSoW15)
GGCAGATTTGTGGACCCAACGCCTACGCCTACGCCCACGCCGCCACCCCG
CTCCGCTTTCTGGGAGCGCCAGACCCCATCAGCTCCGATCGATTCCCTTC
GAGTCGGCGACTCTCTTCTCCAACTCCTCGGCAAGTCCGCTGCTCGCGGC
ACCGAGGACAGCAGTGAGGAGGAAACCCAAAATGAGGCACCAGTCGATGA
AGCAGAAAGGGACCAAGCAACTGCTGCTGCTGTTGCTGTGAGCCCCAAGA
CGGTGTCTTTCAAGAGCCAAGTCCGCGTCGTCCTCGTGCCCTGCAGAAGG
GAGCTCCACTCTCTGAACGCGCAGCTGTGGTGGGGGGCTGACGATTACGG
CGATTTCAGGTGAGGAAGCCGCCCGTCGCTCGGGTTTGGTGACGGCTTGA
TGTGTCTTTTTTTTTTTTGGTCCCGCTCTTTTCTTCTGGCTATTCTTCCG
AGAGCCATAAAAAAAATGTGGCCTCAACGCTCGTACTGGTGTGTACCCTA
CTTTTGCCGTCGGAATCCCGTCTGTTCGATACATTGTAGGGATATCGTTT
AGGGAACTGCCTGTCAAACTTCGGTAGCCCACCTCTTATTTCCATTTTGT
CTTCCGAATCCTTCACAAAAAAATTGTCTCGTTGTGGTTTCCGTATTTGG
CCAGTTTGCCAGCCCCTCCTAACATCCACATACATACATACATACATACA
TACATACATACATACATACATACATACATACATACATACATACATACATA
CATACATACATACATACGTACAACAAGCAGCCAGCACACGCCTTCACGGA
TCAGCGTGCTAAAACATGCCAAGTAGTCGGCACCCCCTTTCGCCTCGTCT
GCTCAAACCGTTACTGCTTGGATCGCATGCAGACGATTCAAAATGAAATG
CCCACAATGTACTGGATCTACGGATCTAGACTAGGTACGTCAACAATCTA
CACACGGCTTACCCCTTTTTGCTTTTTTACGTGCATCAGCAAAGTTTGAT
CTACTCACGTACATACGTACATAGCATGTACCTCGGCCCTTGCGCATCTG
CGCGGGGATGTGTGTGCGGCGGCAAGGGGGGACGTTGTGAATTGCCTCTC
CAACAAGCTTAATCTCGGGGCATAAATCCGGTTCTTTTATACCGCCGATT
GTTTGCTGGTCTGCTGCTGACGTGCTTACTATGTACACTTACACTACATA
TCTCTGATGCCCCACGATCCAAGCGTGTCCGCAGCAGTACCTTGTGTACA
TGCGTTACCTCCAGTGATAGTCACATACCGCACCGCCGTTATATTACCGA
GTAGACAGGTATGTTGAACGCAGAGCCGGTGATAGAGCGGTCCTTTGTAG
CGCTGATCCATTCGTACACCACATCTGTATGTATGTACATTGTTTGTCCG
AAAAAAGCGGAGCAAAAAAATACACCGCGCCGGAAACAAGACATCTACCC
CGCGCACTCCCTTTTGAGACCGCCCTAAACTTGTCGTTAAGACCAACGGC
AGCCGACTCGGAGCGATTAACCACCCAGAACATTATTTCGCGCGAAGAAT
AAAAATGGAGAGCGCCAACGTTGTCCTCCGCGATCGGGGATCTAAAGTCA
GTTTTTTTTCCGGCATGATCCCGCCAACGGGATCCCAAGTCAGTTTTTTT
CCGGCACGATCCCGCCCGCGGCGGGTCTTTTCTGGTGCGAGCACACAAAA
TAAAAGTTACACTGTTTTTCAAGTTTTTCTTCCAAAAAGATACCAGTAAT
ACACAGCAAACACATGACCCTTACCCGCTCTTTTACTCCTTTTAGCACGC
ACACGCCCCATCCGCTTTCCAGGATTTCATTGTCCTCGGCGGCAGTAGTC
CTCTCCCCCCACAATCAACAAGCAGGCCTCGAAAGCTTTATAGATTCGTC
CACCAAGCGCGCGCAGGCAGCTCTGGAAATGCTTTGTGCTCAAGCCGCTC
GGAAAAGGGTTTTGTTCCTTTTGTTCGATCCCCGACGTTGTCGTCCGTCC
GCCCTTTTTACCTTGTTGTTTACAAAGCCTGGATACATGATGTTCAATGT
TCTATCATGTGTGCGTGGTACATGCCGTCGATCTGACCTGTCTCGCCGAT
TGTTGGCGCTCGTTTCTTGTTTTTTTCCCCCAGTTCCTTTGGATTGGGTT
TTCGGTTCCGGATTGAAATAGCTCATTGGAATCTCAACCCCGCATCTCCC
GTACCCACTTCTTGACCCCGGGTGAATTTCTCCAAGCTCACGGAACCTCA
GGCCGTCTGCTTGCGCAGGTCGCCGCTCGTAACCATCCCGACCCAGGGGC
ACGATGCCTTACGGCTCGGCTCGTCGAATTGACAGAGCGGCGGTATTTTG
AGTGCGCAGGACTGTCAGGCCCACACCACACCCGAGTAAAAACCTCGTCG
TGTTCAAATCCTCTGATGAAATGCTCCCGGTTGCTGGATATATCGGTATC
TCCTTCTGGCAGTGCTCGGATACATACCAGTCCCTACTTCGTGCAGAGTC
TCGCGCTCAACCTCGAATCTTTCGACGAACGGGATGAGGTTGAAAGCGCT
CAGTCGCGCCTGCCAGCGACGAGCACGAATCCACGATTTTTTTGACTCGC
CGAGCTCCACAAAAGAGATAAGCAAGAGTCTCGGTCTAGTCTTCGGCCGC
GATACTCGTTCGATTGGAGAATGCTGACGAGTCGAAATTCGCCGATGCGC
CATCAATTTCGACAATTTTTGGATGCGCGCGTAGAGGAGAGGCACCATTA
TCCCCCTTACGCCGTAGCCGTGGTCCCGACAGTTGATTCAACCCTCTTTC
TCGAATACTCGGTGTCGGGGGCTCCGTCTGTTTCCGATGCCAGGTATGTA
TGTACATACGGCACGGGGCCGCGGTAAAGTATATCCAGGACGCACACTGC
CACCGTCACCCTTAGTTGGTGCCGGTCACTGGCACATGTACACTGTACAG
CAGTAGCCGTTCCCACCGATGGCACTTACTGGACAGCCTCACGGCGATGG
AGCAGCAGCTGGCAGACGGTTGTGCTGGATGGAACCTCCACTACACTGTC
CAGCAGTAGCCACGCCCACCGCGGTCACTTACGAGACAGCCTCACGGCAC
TATCCAGGCGCACACCTGTCACTAGTCAGTGCCGGTCACTGGCACACACG
TATACCTACACTGTACAGCAGTAGCCATTCTCCCACCGCGGTCACTTTGT
ACATGATTCGTGCCGTACTTTCGTGCACGAACAAAAACACGCGCTCAGTG
ATGCTGCAACCACACATCTACTGCGATCACTCCCTTCATTTTTGAGTGAG
AAATTGGAATTGGGAGGCGCGGTGCTTCTGCAGCGCAAATATTTACATTC
ATTGGATCATTCATGCATTCGACGTCCCGCCACGAGATCACCCCCGCCCG
ATTTGTTGTGCCTTTCAAGGCTCGACAGCAGTAGTAGAGCAGACTTCACG
CTCCCTCCTGGCTGTTCTAGATACCGAGTGTTTCACAACCTCACCTACGG
CACGCGCTCAAATTGGTTGATTGGCACACCCTCTCAATACTTTGACTTCA
TTGTGATAAGGGTGGGAAGTGCTGAACCCTGCTCGCGATAAAGCAACCTA
ACAGGCAGGCACCGCAGGAGGGATCTACCCCCCCCTCTCTTGTGTGACTC
CGGTTGGGTAGTGTAGCTACATAGTCGTAGTGGAGTAAGGGCGGCAGTGA
GGCAGACGACGAATAAGCCAATAATGGGAGAGAAAAAAAACAAATATAAT
TTCGCGGCGAACCTACACTGCCCCCCCCCCCTACCCCCAGGTTCCGCCCC
GTCCCCGTCCCACTCCTTACCCTCTCCGCTTTGCTCGCAACACGCGCATG
CCCTTTTCCTTGTCTCGGTTTGTTCAACCAGGCGTGAGTACATCGCTGCA
GTGAGGGCGGCGGCGGCGGCCGCGCGAGCACAGCAGGTCGGCGAACAGCA
GCGAAGAACATCACACCCCGAGGCCCGTACCGGCGCCGCGAGCAAAGGAG
CGCCGGAGGACGCCATCGACCAACGATCAACGCCGATGCCGCCCACGCCC
CCGCGCCCGCCGTCGCCTCTCTGCCCGGCGAGCCTGTCGACGCCCCTCCC
TCCGACCAACGCGGAAGCGGCGGCGGCGGCGGCGAAGGCGACGGTCGGGA
CAAGTTCCGGCCACCGGCAACACAAGCAGGCGGCCGGTGGCGTCGACGGC
GGCGGCGTCCTGTTGACCACCTCGATATCCCCGGAAGCGCTGGCAGCAGC
GGCGAGGGCGGGGGCGCTGCCGGCCTCGCCGGCCCCGTCCCCGCCGCTCT
TGAACGGGCACGGGTTCGACGGCGGTGGGCGAAAGGAAGGGGAGGAGGAG
GCGCCCGCTCTGTCGCGGCCACCGCGAACACCGGCCGGTGCCGCAACGGC
GCGGTCTTCCTGCATTCGGGCGAAGTGGACGCTGTTCGCCGGGGCGGCGG
CGGCGAAGGCGGCCGCGGAAGAGTCCGAGGAGAGCGGCTACCGCACGATG
TCCATGAGCTCGGTGTCCGACAACGCCTTCGGGGATTGCGACGGCTGCGA
CAGCGACTCGGACGGCGACGGCGACAACGGCGGCGGCTACGAGTCCGGCG
AGGCAGGCGATGGACGCGCGTCGTACAGGGGCGGTAAGCGGTTGGTCGCG
TCCCCCGGGAAGGAAGATAATTTTCTGCTCCGAGGGAGGGCATAACTTTT
ATTTTGCTTGAAAGAGAGGGCCATCTTTTCTGCTGCAGGTATATAGACAA
TTAGACAGCAGTTGGGCCTTTCCTTGTTTTATGCAACCCTTTTGGTTCGT
GCGAAAGGGCGGGGAGGGAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6536:3214..8034+

>mRNA_L-elsbetiae_contig6536.15235.1 ID=mRNA_L-elsbetiae_contig6536.15235.1|Name=mRNA_L-elsbetiae_contig6536.15235.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1320bp|location=Sequence derived from alignment at L-elsbetiae_contig6536:3214..8034+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGCCCACGCCCCCGCGCCCGCCGTCGCCTCTCTGCCCGGCGAGCCT
GTCGACGCCCCTCCCTCCGACCAACGCGGAAGCGGCGGCGGCGGCGGCGA
AGGCGACGGTCGGGACAAGTTCCGGCCACCGGCAACACAAGCAGGCGGCC
GGTGGCGTCGACGGCGGCGGCGTCCTGTTGACCACCTCGATATCCCCGGA
AGCGCTGGCAGCAGCGGCGAGGGCGGGGGCGCTGCCGGCCTCGCCGGCCC
CGTCCCCGCCGCTCTTGAACGGGCACGGGTTCGACGGCGGTGGGCGAAAG
GAAGGGGAGGAGGAGGCGCCCGCTCTGTCGCGGCCACCGCGAACACCGGC
CGGTGCCGCAACGGCGCGGTCTTCCTGCATTCGGGCGAAGTGGACGCTGT
TCGCCGGGGCGGCGGCGGCGAAGGCGGCCGCGGAAGAGTCCGAGGAGAGC
GGCTACCGCACGATGTCCATGAGCTCGGTGTCCGACAACGCCTTCGGGGA
TTGCGACGGCTGCGACAGCGACTCGGACGGCGACGGCGACAACGGCGGCG
GCTACGAGTCCGGCGAGGCAGGCGATGGACGCGCGTCGTACAGGGGCGGT
AAGCGGTTGGTCGCGTCCCCCGGGAAGGAAGATAATTTTCTGCTCCGAGG
GAGGGCATAAATGCCGCCCACGCCCCCGCGCCCGCCGTCGCCTCTCTGCC
CGGCGAGCCTGTCGACGCCCCTCCCTCCGACCAACGCGGAAGCGGCGGCG
GCGGCGGCGAAGGCGACGGTCGGGACAAGTTCCGGCCACCGGCAACACAA
GCAGGCGGCCGGTGGCGTCGACGGCGGCGGCGTCCTGTTGACCACCTCGA
TATCCCCGGAAGCGCTGGCAGCAGCGGCGAGGGCGGGGGCGCTGCCGGCC
TCGCCGGCCCCGTCCCCGCCGCTCTTGAACGGGCACGGGTTCGACGGCGG
TGGGCGAAAGGAAGGGGAGGAGGAGGCGCCCGCTCTGTCGCGGCCACCGC
GAACACCGGCCGGTGCCGCAACGGCGCGGTCTTCCTGCATTCGGGCGAAG
TGGACGCTGTTCGCCGGGGCGGCGGCGGCGAAGGCGGCCGCGGAAGAGTC
CGAGGAGAGCGGCTACCGCACGATGTCCATGAGCTCGGTGTCCGACAACG
CCTTCGGGGATTGCGACGGCTGCGACAGCGACTCGGACGGCGACGGCGAC
AACGGCGGCGGCTACGAGTCCGGCGAGGCAGGCGATGGACGCGCGTCGTA
CAGGGGCGGTAAGCGGTTGGTCGCGTCCCCCGGGAAGGAAGATAATTTTC
TGCTCCGAGGGAGGGCATAA
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