mRNA_L-elsbetiae_contig6517.15209.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6517.15209.1
Unique NamemRNA_L-elsbetiae_contig6517.15209.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6517.15209.1 vs. uniprot
Match: D7G7R7_ECTSI (Palmitoyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7R7_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 1.820e-31
Identity = 62/83 (74.70%), Postives = 72/83 (86.75%), Query Frame = 1 
Query:   85 MYDAPTIMNPNMAPHTRPVETTPLQDAVKACQFGEEDVLQELLEPASGRVQVNANDRDAEDVPLLHWAAINDRREIVKYLLQQ 333
            M  APTIMNP++A H  PV +TP+QDAVKACQFG+ED LQELLEPA+GR  V+ NDRDAEDVPLLHWAAINDRR +VKYLL++
Sbjct:    3 MDTAPTIMNPSLA-HPPPVASTPVQDAVKACQFGDEDALQELLEPATGRALVDVNDRDAEDVPLLHWAAINDRRGVVKYLLKR 84
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BLAST of mRNA_L-elsbetiae_contig6517.15209.1 vs. uniprot
Match: A0A7S0CWK9_9EUKA (Palmitoyltransferase n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CWK9_9EUKA)

HSP 1 Score: 58.2 bits (139), Expect = 1.530e-7
Identity = 31/58 (53.45%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:  160 DAVKACQFGEEDVLQELLEPASGRVQVNANDRDAEDVPLLHWAAINDRREIVKYLLQQ 333
            DAVKA Q+G+ DV++ ++E    RV    NDRD ++  LLHWA+IN+R EIVKYLL++
Sbjct:   66 DAVKAVQWGKLDVVKGMVESKDIRV----NDRDDQNCSLLHWASINNRVEIVKYLLEK 119
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BLAST of mRNA_L-elsbetiae_contig6517.15209.1 vs. uniprot
Match: A0A7S2TPC4_9EUKA (Palmitoyltransferase n=3 Tax=Lotharella TaxID=74819 RepID=A0A7S2TPC4_9EUKA)

HSP 1 Score: 57.8 bits (138), Expect = 2.070e-7
Identity = 33/67 (49.25%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:  133 RPVETTPLQDAVKACQFGEEDVLQELLEPASGRVQVNANDRDAEDVPLLHWAAINDRREIVKYLLQQ 333
            RPV    + +AVKA Q+G+ D L+ ++E    RV    NDRD ++  LLHWA+IN+R EIVKYLL++
Sbjct:   26 RPVRNI-MTEAVKAVQWGKLDTLKRMVEGKEIRV----NDRDDQNCSLLHWASINNRVEIVKYLLEK 87
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BLAST of mRNA_L-elsbetiae_contig6517.15209.1 vs. uniprot
Match: A0A7R9R0T7_9ACAR (Hypothetical protein n=1 Tax=Oppiella nova TaxID=334625 RepID=A0A7R9R0T7_9ACAR)

HSP 1 Score: 55.8 bits (133), Expect = 2.420e-7
Identity = 30/56 (53.57%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:  160 DAVKACQFGEEDVLQELLEPASGRVQVNANDRDAEDVPLLHWAAINDRREIVKYLL 327
            D V+A Q+G  +  +EL+E  SG    N N RDAE+V LLHWAAIN+RR++VKY +
Sbjct:   65 DVVRATQYGAFERCKELIE--SG---FNVNQRDAENVTLLHWAAINNRRDLVKYYI 115
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BLAST of mRNA_L-elsbetiae_contig6517.15209.1 vs. uniprot
Match: A0A3S3PWC4_9ACAR (Palmitoyltransferase n=2 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3PWC4_9ACAR)

HSP 1 Score: 57.0 bits (136), Expect = 3.860e-7
Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:  160 DAVKACQFGEEDVLQELLEPASGRVQVNANDRDAEDVPLLHWAAINDRREIVKYLLQQ 333
            D VKA Q+G    +QEL+E        + N RD+E+V LLHWAAIN+R+EIVKY L +
Sbjct:   52 DIVKATQYGAITRVQELIEAG-----FDVNQRDSENVTLLHWAAINNRKEIVKYFLSK 104
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BLAST of mRNA_L-elsbetiae_contig6517.15209.1 vs. uniprot
Match: A0A7S2VV33_9EUKA (Palmitoyltransferase n=1 Tax=Norrisiella sphaerica TaxID=552664 RepID=A0A7S2VV33_9EUKA)

HSP 1 Score: 57.0 bits (136), Expect = 3.900e-7
Identity = 29/60 (48.33%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:  154 LQDAVKACQFGEEDVLQELLEPASGRVQVNANDRDAEDVPLLHWAAINDRREIVKYLLQQ 333
            + +AVKA Q+G+ D L++++E    RV    NDRD ++  LLHWA+IN+R +IVKYLL++
Sbjct:   86 IAEAVKAVQWGKLDALKQMVEEKEIRV----NDRDDQNCSLLHWASINNRVDIVKYLLEK 141
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BLAST of mRNA_L-elsbetiae_contig6517.15209.1 vs. uniprot
Match: A0A8J1U112_OWEFU (Palmitoyltransferase n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1U112_OWEFU)

HSP 1 Score: 56.6 bits (135), Expect = 5.300e-7
Identity = 33/71 (46.48%), Postives = 42/71 (59.15%), Query Frame = 1 
Query:  121 APHTRPVETTPLQDAVKACQFGEEDVLQELLEPASGRVQVNANDRDAEDVPLLHWAAINDRREIVKYLLQQ 333
            AP T   E T   D VKA Q+G  D   EL+E        + N  DAE+V LLHWAAIN+R++IVKY + +
Sbjct:   54 APPTTEPEDTSAWDIVKATQYGVYDRCVELIEAGH-----DVNQPDAENVTLLHWAAINNRQDIVKYYMNK 119
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BLAST of mRNA_L-elsbetiae_contig6517.15209.1 vs. uniprot
Match: A0A443SNB3_9ACAR (Palmitoyltransferase n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443SNB3_9ACAR)

HSP 1 Score: 56.2 bits (134), Expect = 7.270e-7
Identity = 29/58 (50.00%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:  160 DAVKACQFGEEDVLQELLEPASGRVQVNANDRDAEDVPLLHWAAINDRREIVKYLLQQ 333
            D VKA Q+G    +QEL++        + N RD+E+V LLHWAAIN+RREIVKY + +
Sbjct:   53 DIVKATQYGALTRVQELIDAG-----YDVNQRDSENVTLLHWAAINNRREIVKYFMSK 105
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BLAST of mRNA_L-elsbetiae_contig6517.15209.1 vs. uniprot
Match: A0A653DTL2_CALMS (Uncharacterized protein n=1 Tax=Callosobruchus maculatus TaxID=64391 RepID=A0A653DTL2_CALMS)

HSP 1 Score: 55.5 bits (132), Expect = 9.550e-7
Identity = 28/58 (48.28%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:  160 DAVKACQFGEEDVLQELLEPASGRVQVNANDRDAEDVPLLHWAAINDRREIVKYLLQQ 333
            D VKA Q+G    ++EL+E        N N+RDAE+V LLHWAAIN+R+EI+ Y +++
Sbjct:   44 DIVKATQYGAFSRVKELVEAG-----YNVNERDAENVTLLHWAAINNRKEIMGYFIEK 96
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BLAST of mRNA_L-elsbetiae_contig6517.15209.1 vs. uniprot
Match: A0A653DVL8_CALMS (Uncharacterized protein n=1 Tax=Callosobruchus maculatus TaxID=64391 RepID=A0A653DVL8_CALMS)

HSP 1 Score: 55.5 bits (132), Expect = 1.240e-6
Identity = 28/58 (48.28%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:  160 DAVKACQFGEEDVLQELLEPASGRVQVNANDRDAEDVPLLHWAAINDRREIVKYLLQQ 333
            D VKA Q+G    ++EL+E        N N+RDAE+V LLHWAAIN+R+EI+ Y +++
Sbjct:   44 DIVKATQYGAFSRVKELVEAG-----YNVNERDAENVTLLHWAAINNRKEIMGYFIEK 96
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6517.15209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7R7_ECTSI1.820e-3174.70Palmitoyltransferase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A7S0CWK9_9EUKA1.530e-753.45Palmitoyltransferase n=1 Tax=Amorphochlora amoebif... [more]
A0A7S2TPC4_9EUKA2.070e-749.25Palmitoyltransferase n=3 Tax=Lotharella TaxID=7481... [more]
A0A7R9R0T7_9ACAR2.420e-753.57Hypothetical protein n=1 Tax=Oppiella nova TaxID=3... [more]
A0A3S3PWC4_9ACAR3.860e-751.72Palmitoyltransferase n=2 Tax=Dinothrombium tinctor... [more]
A0A7S2VV33_9EUKA3.900e-748.33Palmitoyltransferase n=1 Tax=Norrisiella sphaerica... [more]
A0A8J1U112_OWEFU5.300e-746.48Palmitoyltransferase n=1 Tax=Owenia fusiformis Tax... [more]
A0A443SNB3_9ACAR7.270e-750.00Palmitoyltransferase n=1 Tax=Leptotrombidium delie... [more]
A0A653DTL2_CALMS9.550e-748.28Uncharacterized protein n=1 Tax=Callosobruchus mac... [more]
A0A653DVL8_CALMS1.240e-648.28Uncharacterized protein n=1 Tax=Callosobruchus mac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6517contigL-elsbetiae_contig6517:1683..2615 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.7
Seed ortholog evalue6.7e-27
Seed eggNOG ortholog2880.D7G7R7
Preferred nameZDHHC13
KEGG koko:K20032
KEGG TC9.B.37.1,9.B.37.3
Hectar predicted targeting categorysignal peptide
GOsGO:0000003,GO:0000139,GO:0001505,GO:0002791,GO:0002793,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0005798,GO:0006464,GO:0006497,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006836,GO:0006887,GO:0007154,GO:0007267,GO:0007268,GO:0007269,GO:0007276,GO:0007283,GO:0008021,GO:0008104,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009059,GO:0009987,GO:0012505,GO:0015031,GO:0015075,GO:0015095,GO:0015318,GO:0015693,GO:0015833,GO:0016020,GO:0016079,GO:0016192,GO:0016234,GO:0016235,GO:0016409,GO:0016417,GO:0016740,GO:0016746,GO:0016747,GO:0017156,GO:0018345,GO:0019538,GO:0019706,GO:0019707,GO:0019953,GO:0022414,GO:0022857,GO:0022890,GO:0023052,GO:0023061,GO:0030001,GO:0030133,GO:0030660,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032504,GO:0032879,GO:0032880,GO:0032940,GO:0033036,GO:0034220,GO:0034645,GO:0036211,GO:0042157,GO:0042158,GO:0042802,GO:0042886,GO:0042953,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044456,GO:0044464,GO:0044703,GO:0044872,GO:0045055,GO:0045184,GO:0045202,GO:0046873,GO:0046903,GO:0046907,GO:0048232,GO:0048489,GO:0048518,GO:0048522,GO:0048609,GO:0050708,GO:0050714,GO:0050789,GO:0050794,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051704,GO:0055085,GO:0065007,GO:0065008,GO:0070201,GO:0070382,GO:0070838,GO:0071702,GO:0071704,GO:0071705,GO:0072511,GO:0090087,GO:0097458,GO:0097479,GO:0097480,GO:0097708,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098791,GO:0098793,GO:0098805,GO:0098916,GO:0099003,GO:0099503,GO:0099504,GO:0099536,GO:0099537,GO:0099643,GO:0140096,GO:1901564,GO:1901566,GO:1901576,GO:1903530,GO:1903532,GO:1903830,GO:1904951
EggNOG free text desc.protein-cysteine S-palmitoyltransferase activity
EggNOG OGsCOG5273@1,KOG0509@2759
EC2.3.1.225
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04131
Exons3
Model size335
Cds size333
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6517.15209.1prot_L-elsbetiae_contig6517.15209.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6517 1684..2615 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816719.6312504-CDS-L-elsbetiae_contig6517:1683..17851622816719.6312504-CDS-L-elsbetiae_contig6517:1683..1785Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6517 1684..1785 -
1691683763.5587454-CDS-L-elsbetiae_contig6517:1683..17851691683763.5587454-CDS-L-elsbetiae_contig6517:1683..1785Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6517 1684..1785 -
1622816719.6448162-CDS-L-elsbetiae_contig6517:2136..21871622816719.6448162-CDS-L-elsbetiae_contig6517:2136..2187Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6517 2137..2187 -
1691683763.5715344-CDS-L-elsbetiae_contig6517:2136..21871691683763.5715344-CDS-L-elsbetiae_contig6517:2136..2187Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6517 2137..2187 -
1622816719.6583848-CDS-L-elsbetiae_contig6517:2435..26151622816719.6583848-CDS-L-elsbetiae_contig6517:2435..2615Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6517 2436..2615 -
1691683763.5824249-CDS-L-elsbetiae_contig6517:2435..26151691683763.5824249-CDS-L-elsbetiae_contig6517:2435..2615Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6517 2436..2615 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6517.15209.1

>prot_L-elsbetiae_contig6517.15209.1 ID=prot_L-elsbetiae_contig6517.15209.1|Name=mRNA_L-elsbetiae_contig6517.15209.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=111bp
ASLIASVVLCCCGAVLAEETSGAMMNDAMYDAPTIMNPNMAPHTRPVETT
PLQDAVKACQFGEEDVLQELLEPASGRVQVNANDRDAEDVPLLHWAAIND
RREIVKYLLQQ
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mRNA from alignment at L-elsbetiae_contig6517:1683..2615-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6517.15209.1 ID=mRNA_L-elsbetiae_contig6517.15209.1|Name=mRNA_L-elsbetiae_contig6517.15209.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=933bp|location=Sequence derived from alignment at L-elsbetiae_contig6517:1683..2615- (Laminarionema elsbetiae ELsaHSoW15)
GCCTCTCTCATCGCATCTGTTGTACTCTGTTGCTGTGGGGCGGTGCTCGC
GGAGGAAACTTCTGGGGCGATGATGAATGACGCGATGTATGACGCGCCAA
CGATCATGAACCCGAACATGGCCCCGCATACCCGTCCTGTGGAAACCACT
CCCTTGCAGGATGCCGTGAAGGCTTGCCAGGTGACTATCGTACCGGCAGA
CTAGAGACAATGCTTTGTTAATGTTCGTAGTTGTATAGTAAGTAGTCCGC
TATTCAAACGCGTCCAGCAGCCTTGGAGACATACGCTATGTGTACAACTG
GCGTACACTCACCAAGAAGTGGTAAGTTGTTTCGGTGATGTGTGGAACAC
CCCTTGCTGGCACGCCCTGAATTGTCCGCCGACTCCATTGCATTGCATTC
TTATCTATTCTTGTTCGTCACTGCGCAGTTCGGCGAAGAGGACGTTCTTC
AAGAGCTGTTGGAGCCAGCCTCGGGAAGGGTAAGCCGATCATGAGGGCGT
GCACGCATTCCACACACGTTCATCGAGGCGCCCTTGGGGCGCGGGAAAGA
GAGAGGAGTTGAGACTTTTCAGACGCCGAGAGGGAGAGATACTCACGATT
TGCTCTCACCACGTATCTATTCTTGGGTGCGGCGACACTGCTGCTGTTCG
GAGTATTCAAAAAGAGACATCAATTTGTGGGTCGGCTACAGTACTGCTGC
TGCTGCTGCAAAGGGAAATGCGTTCGAGCATCTTCAATTTTCCCGGTGCA
CCGGCCTCACCAGTAGTTGTTTTCGACCTCCTACCGGTTTTCTATCCGCC
AATCTTGACATCTGATCTTGTCTCTCACAGGTGCAAGTGAACGCTAACGA
TCGGGATGCCGAGGACGTCCCCCTGCTTCACTGGGCGGCAATCAACGACC
GGAGAGAGATAGTGAAGTATCTCTTGCAACAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6517:1683..2615-

>mRNA_L-elsbetiae_contig6517.15209.1 ID=mRNA_L-elsbetiae_contig6517.15209.1|Name=mRNA_L-elsbetiae_contig6517.15209.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig6517:1683..2615- (Laminarionema elsbetiae ELsaHSoW15)
GCCTCTCTCATCGCATCTGTTGTACTCTGTTGCTGTGGGGCGGTGCTCGC
GGAGGAAACTTCTGGGGCGATGATGAATGACGCGATGTATGACGCGCCAA
CGATCATGAACCCGAACATGGCCCCGCATACCCGTCCTGTGGAAACCACT
CCCTTGCAGGATGCCGTGAAGGCTTGCCAGGCCTCTCTCATCGCATCTGT
TGTACTCTGTTGCTGTGGGGCGGTGCTCGCGGAGGAAACTTCTGGGGCGA
TGATGAATGACGCGATGTATGACGCGCCAACGATCATGAACCCGAACATG
GCCCCGCATACCCGTCCTGTGGAAACCACTCCCTTGCAGGATGCCGTGAA
GGCTTGCCAGTTCGGCGAAGAGGACGTTCTTCAAGAGCTGTTGGAGCCAG
CCTCGGGAAGGTTCGGCGAAGAGGACGTTCTTCAAGAGCTGTTGGAGCCA
GCCTCGGGAAGGGTGCAAGTGAACGCTAACGATCGGGATGCCGAGGACGT
CCCCCTGCTTCACTGGGCGGCAATCAACGACCGGAGAGAGATAGTGAAGT
ATCTCTTGCAACAGGTGCAAGTGAACGCTAACGATCGGGATGCCGAGGAC
GTCCCCCTGCTTCACTGGGCGGCAATCAACGACCGGAGAGAGATAGTGAA
GTATCTCTTGCAACAG
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