mRNA_L-elsbetiae_contig6509.15199.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6509.15199.1
Unique NamemRNA_L-elsbetiae_contig6509.15199.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6509.15199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6509contigL-elsbetiae_contig6509:4565..4968 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size404
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6509.15199.1prot_L-elsbetiae_contig6509.15199.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6509 4656..4958 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816719.0037253-UTR-L-elsbetiae_contig6509:4564..46551622816719.0037253-UTR-L-elsbetiae_contig6509:4564..4655Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6509 4565..4655 +
1691683763.1709828-UTR-L-elsbetiae_contig6509:4564..46551691683763.1709828-UTR-L-elsbetiae_contig6509:4564..4655Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6509 4565..4655 +
1622816719.0285501-UTR-L-elsbetiae_contig6509:4958..49681622816719.0285501-UTR-L-elsbetiae_contig6509:4958..4968Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6509 4959..4968 +
1691683763.192194-UTR-L-elsbetiae_contig6509:4958..49681691683763.192194-UTR-L-elsbetiae_contig6509:4958..4968Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6509 4959..4968 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816719.0161915-CDS-L-elsbetiae_contig6509:4655..49581622816719.0161915-CDS-L-elsbetiae_contig6509:4655..4958Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6509 4656..4958 +
1691683763.1822274-CDS-L-elsbetiae_contig6509:4655..49581691683763.1822274-CDS-L-elsbetiae_contig6509:4655..4958Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6509 4656..4958 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6509.15199.1

>prot_L-elsbetiae_contig6509.15199.1 ID=prot_L-elsbetiae_contig6509.15199.1|Name=mRNA_L-elsbetiae_contig6509.15199.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
MCAPTHQPIRGIRYYVLSGVGDRHALLIRMTNKGTGHPHRFVSLHAPRRS
ADKSWGENIKSIGYHISPCGARESRADGNALPSSCFTGYSDLEPNQCAPT
*
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mRNA from alignment at L-elsbetiae_contig6509:4565..4968+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6509.15199.1 ID=mRNA_L-elsbetiae_contig6509.15199.1|Name=mRNA_L-elsbetiae_contig6509.15199.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=404bp|location=Sequence derived from alignment at L-elsbetiae_contig6509:4565..4968+ (Laminarionema elsbetiae ELsaHSoW15)
CCAGGGAACAAGGAAGGCAGGAAGTTTGGGGTTGGGCGGAATGGGGACGG
AGGAGCGGCAGTAAAACTACAATAATTGTAAAACTACGCGAATGTGTGCA
CCAACGCACCAACCGATACGTGGCATTAGATATTACGTGTTGTCGGGTGT
GGGCGACAGACATGCTCTTTTGATACGCATGACAAATAAGGGGACCGGGC
ACCCACATCGCTTCGTTTCTCTGCACGCACCGCGTCGGTCAGCTGATAAA
TCATGGGGGGAAAACATAAAGAGCATCGGATACCATATTTCTCCGTGTGG
CGCCCGGGAATCGAGGGCAGATGGGAACGCCCTGCCCTCAAGCTGTTTCA
CCGGTTACAGCGACCTAGAACCTAACCAATGCGCACCAACCTAGCTTGGA
GCTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6509:4565..4968+

>mRNA_L-elsbetiae_contig6509.15199.1 ID=mRNA_L-elsbetiae_contig6509.15199.1|Name=mRNA_L-elsbetiae_contig6509.15199.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig6509:4565..4968+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGTGCACCAACGCACCAACCGATACGTGGCATTAGATATTACGTGTT
GTCGGGTGTGGGCGACAGACATGCTCTTTTGATACGCATGACAAATAAGG
GGACCGGGCACCCACATCGCTTCGTTTCTCTGCACGCACCGCGTCGGTCA
GCTGATAAATCATGGGGGGAAAACATAAAGAGCATCGGATACCATATTTC
TCCGTGTGGCGCCCGGGAATCGAGGGCAGATGGGAACGCCCTGCCCTCAA
GCTGTTTCACCGGTTACAGCGACCTAGAACCTAACCAATGCGCACCAACC
TAGATGTGTGCACCAACGCACCAACCGATACGTGGCATTAGATATTACGT
GTTGTCGGGTGTGGGCGACAGACATGCTCTTTTGATACGCATGACAAATA
AGGGGACCGGGCACCCACATCGCTTCGTTTCTCTGCACGCACCGCGTCGG
TCAGCTGATAAATCATGGGGGGAAAACATAAAGAGCATCGGATACCATAT
TTCTCCGTGTGGCGCCCGGGAATCGAGGGCAGATGGGAACGCCCTGCCCT
CAAGCTGTTTCACCGGTTACAGCGACCTAGAACCTAACCAATGCGCACCA
ACCTAG
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