mRNA_L-elsbetiae_contig6478.15155.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6478.15155.1
Unique NamemRNA_L-elsbetiae_contig6478.15155.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6478.15155.1 vs. uniprot
Match: A0A6H5JAA6_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAA6_9PHAE)

HSP 1 Score: 242 bits (618), Expect = 8.110e-71
Identity = 133/174 (76.44%), Postives = 143/174 (82.18%), Query Frame = 1 
Query:    7 GANAIVVRADDAT--AAATDGGGAPRPGGGERAAGAMGAPSGDDSEGEQ--EVGSVSVPRAKGLTGDDFQCNICWELLARPVTLVCGHTACESCMAKYLRAQAQAQAQIGNLRANRISCPAGCQRMIPLVLPEVTTMVQKLLTRGFPRAYQDRLQETEPERALVSQVRRIADDA 516
            G NA+VVR +DA   AAA D     R GGG  A   +       S GE+  EVG V+ PRA+GLTGDDFQCNICWE+LARPVTL CGHTACESCMAKYLRAQAQAQAQIGN+RANRISCPAGCQRMIPLVLPEVTTMVQKLLTRGFP AY++RLQETEPERALVSQVRRIADDA
Sbjct:  385 GTNAVVVRDEDAATAAAAADA----REGGGREAGAGL-------SSGEEGGEVGFVAAPRAEGLTGDDFQCNICWEMLARPVTLACGHTACESCMAKYLRAQAQAQAQIGNVRANRISCPAGCQRMIPLVLPEVTTMVQKLLTRGFPSAYRERLQETEPERALVSQVRRIADDA 547
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BLAST of mRNA_L-elsbetiae_contig6478.15155.1 vs. uniprot
Match: D7G4J4_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4J4_ECTSI)

HSP 1 Score: 234 bits (598), Expect = 7.640e-69
Identity = 114/123 (92.68%), Postives = 119/123 (96.75%), Query Frame = 1 
Query:  148 EVGSVSVPRAKGLTGDDFQCNICWELLARPVTLVCGHTACESCMAKYLRAQAQAQAQIGNLRANRISCPAGCQRMIPLVLPEVTTMVQKLLTRGFPRAYQDRLQETEPERALVSQVRRIADDA 516
            EVG V+ PRA+GLTGDDFQCNICWE+LARPVTL CGHTACESCMAKYLRAQAQAQAQIGNLRANRISCPAGCQRMIPLVLPEVTTMVQKLLTRGFP AY++RLQETEPERALVSQVRRIADDA
Sbjct:  170 EVGFVAAPRAEGLTGDDFQCNICWEMLARPVTLACGHTACESCMAKYLRAQAQAQAQIGNLRANRISCPAGCQRMIPLVLPEVTTMVQKLLTRGFPSAYRERLQETEPERALVSQVRRIADDA 292
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BLAST of mRNA_L-elsbetiae_contig6478.15155.1 vs. uniprot
Match: A0A836CBF7_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBF7_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 2.950e-8
Identity = 32/77 (41.56%), Postives = 44/77 (57.14%), Query Frame = 1 
Query:  199 FQCNICWELLARPVTLVCGHTACESCMAKYLRAQAQAQAQIGNLRANRI---SCPAGCQRMIPLVLPEVTTMVQKLL 420
              C IC ELL RPVTL CGHTACE C A++L     +  +     A  +   +CPAGC   + L LP V+ ++ K++
Sbjct:  289 LDCPICLELLYRPVTLPCGHTACELCFARFLTPFTPSTRRRAGASARALGDPACPAGCSTPLALALPAVSCVLAKVI 365
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BLAST of mRNA_L-elsbetiae_contig6478.15155.1 vs. uniprot
Match: UPI001457E81D (bifunctional apoptosis regulator-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI001457E81D)

HSP 1 Score: 54.7 bits (130), Expect = 1.720e-5
Identity = 35/120 (29.17%), Postives = 53/120 (44.17%), Query Frame = 1 
Query:  160 VSVPRAKGLTGDDFQCNICWELLARPVTLVCGHTACESCMAKYLRAQAQAQAQIGNLRANRISCPAGCQRMIPLVLPEVTTMVQKLLTRGFPRAYQDRLQE--TEPERALVSQVRRIADD 513
            + +P        + +C  C+ELL  P TLVCGHT C  C+AK+             + + R  CP           P+V  M++ +L   F +    R QE  TE  R L+ +   +A+D
Sbjct:   13 IQMPMMSTEDHGEAECGCCFELLVEPTTLVCGHTFCRHCLAKW------------TVTSGRRLCPTCKSEWRGS--PKVNIMIRNMLENAFSQKLAARTQEVDTEENRRLIKRFDAMAND 118
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BLAST of mRNA_L-elsbetiae_contig6478.15155.1 vs. uniprot
Match: A0A665VHJ5_ECHNA (Bloodthirsty-related gene family, member 12 n=1 Tax=Echeneis naucrates TaxID=173247 RepID=A0A665VHJ5_ECHNA)

HSP 1 Score: 53.9 bits (128), Expect = 3.420e-5
Identity = 30/99 (30.30%), Postives = 49/99 (49.49%), Query Frame = 1 
Query:  157 SVSVPRAKGLTGDDFQCNICWELLARPVTLVCGHTACESCMAKYLRAQAQAQAQIGNLRANRISCPAGCQRM--------IPLVLPEVTTMVQKLLTRG 429
            SVS P+ + L+ D F C+IC E+   PV+  CGH+ C++C+  Y               + + SCP  C++         +  VL E+++  Q L+T G
Sbjct:    3 SVSSPKGRVLSEDQFSCSICLEVFVEPVSTPCGHSFCKACLQGYWN------------HSKKFSCPM-CKKTYSKKPEMSVNRVLAEISSQFQGLMTAG 88
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BLAST of mRNA_L-elsbetiae_contig6478.15155.1 vs. uniprot
Match: UPI0011142BF1 (uncharacterized protein LOC115059257 n=1 Tax=Echeneis naucrates TaxID=173247 RepID=UPI0011142BF1)

HSP 1 Score: 53.9 bits (128), Expect = 3.860e-5
Identity = 30/99 (30.30%), Postives = 49/99 (49.49%), Query Frame = 1 
Query:  157 SVSVPRAKGLTGDDFQCNICWELLARPVTLVCGHTACESCMAKYLRAQAQAQAQIGNLRANRISCPAGCQRM--------IPLVLPEVTTMVQKLLTRG 429
            SVS P+ + L+ D F C+IC E+   PV+  CGH+ C++C+  Y               + + SCP  C++         +  VL E+++  Q L+T G
Sbjct:    3 SVSSPKGRVLSEDQFSCSICLEVFVEPVSTPCGHSFCKACLQGYWN------------HSKKFSCPM-CKKTYSKKPEMSVNRVLAEISSQFQGLMTAG 88
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BLAST of mRNA_L-elsbetiae_contig6478.15155.1 vs. uniprot
Match: UPI000C6FB824 (uncharacterized protein LOC111661711 n=1 Tax=Seriola lalandi dorsalis TaxID=1841481 RepID=UPI000C6FB824)

HSP 1 Score: 53.9 bits (128), Expect = 3.870e-5
Identity = 30/99 (30.30%), Postives = 48/99 (48.48%), Query Frame = 1 
Query:  157 SVSVPRAKGLTGDDFQCNICWELLARPVTLVCGHTACESCMAKYLRAQAQAQAQIGNLRANRISCPAGCQRM--------IPLVLPEVTTMVQKLLTRG 429
            S+S PR + L+ D F C+IC E+   PV+  CGH+ C++C+  Y               + + SCP  C++         +  VL E++T  Q L+  G
Sbjct:    3 SISSPRGRVLSEDQFSCSICLEVFVEPVSTPCGHSFCKACLQGYWN------------HSKKFSCPM-CKKSYSKKPEMSVNRVLAEISTQFQGLMMAG 88
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BLAST of mRNA_L-elsbetiae_contig6478.15155.1 vs. uniprot
Match: A0A0M0JZ56_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JZ56_9EUKA)

HSP 1 Score: 53.1 bits (126), Expect = 6.030e-5
Identity = 31/89 (34.83%), Postives = 49/89 (55.06%), Query Frame = 1 
Query:  211 ICWELLARPVTLVCGHTACESCMAKYLRAQAQAQAQIGNLRANRIS-CP-AGCQRMIPLVLPEVTTMVQKLLTRGFPRAYQDRLQETEP 471
            +C ++   PVTL+CGHTAC SC+ ++  +    +A    LR +  + CP A C   IP ++PEV  +++  + +  P     RLQ  EP
Sbjct:    1 MCLDIFIDPVTLMCGHTACRSCLIRHFESIDANRAHREQLRDSGFATCPLARCP--IPFIMPEVNFVLRSTVLQSHPERVAARLQGDEP 87
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6478.15155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JAA6_9PHAE8.110e-7176.44RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G4J4_ECTSI7.640e-6992.68RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A836CBF7_9STRA2.950e-841.56RING-type domain-containing protein n=1 Tax=Tribon... [more]
UPI001457E81D1.720e-529.17bifunctional apoptosis regulator-like n=1 Tax=Pect... [more]
A0A665VHJ5_ECHNA3.420e-530.30Bloodthirsty-related gene family, member 12 n=1 Ta... [more]
UPI0011142BF13.860e-530.30uncharacterized protein LOC115059257 n=1 Tax=Echen... [more]
UPI000C6FB8243.870e-530.30uncharacterized protein LOC111661711 n=1 Tax=Serio... [more]
A0A0M0JZ56_9EUKA6.030e-534.83Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6478contigL-elsbetiae_contig6478:7816..9494 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size557
Cds size555
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6478.15155.1prot_L-elsbetiae_contig6478.15155.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6478 7816..9493 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816714.8622622-CDS-L-elsbetiae_contig6478:7815..81731622816714.8622622-CDS-L-elsbetiae_contig6478:7815..8173Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6478 7816..8173 +
1691683760.2875602-CDS-L-elsbetiae_contig6478:7815..81731691683760.2875602-CDS-L-elsbetiae_contig6478:7815..8173Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6478 7816..8173 +
1622816714.875669-CDS-L-elsbetiae_contig6478:8682..88161622816714.875669-CDS-L-elsbetiae_contig6478:8682..8816Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6478 8683..8816 +
1691683760.2986565-CDS-L-elsbetiae_contig6478:8682..88161691683760.2986565-CDS-L-elsbetiae_contig6478:8682..8816Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6478 8683..8816 +
1622816714.8877478-CDS-L-elsbetiae_contig6478:9430..94931622816714.8877478-CDS-L-elsbetiae_contig6478:9430..9493Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6478 9431..9493 +
1691683760.3105495-CDS-L-elsbetiae_contig6478:9430..94931691683760.3105495-CDS-L-elsbetiae_contig6478:9430..9493Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6478 9431..9493 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6478.15155.1

>prot_L-elsbetiae_contig6478.15155.1 ID=prot_L-elsbetiae_contig6478.15155.1|Name=mRNA_L-elsbetiae_contig6478.15155.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=185bp
AGGANAIVVRADDATAAATDGGGAPRPGGGERAAGAMGAPSGDDSEGEQE
VGSVSVPRAKGLTGDDFQCNICWELLARPVTLVCGHTACESCMAKYLRAQ
AQAQAQIGNLRANRISCPAGCQRMIPLVLPEVTTMVQKLLTRGFPRAYQD
RLQETEPERALVSQVRRIADDAAAESRRRRRRHHH
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mRNA from alignment at L-elsbetiae_contig6478:7816..9494+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6478.15155.1 ID=mRNA_L-elsbetiae_contig6478.15155.1|Name=mRNA_L-elsbetiae_contig6478.15155.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1679bp|location=Sequence derived from alignment at L-elsbetiae_contig6478:7816..9494+ (Laminarionema elsbetiae ELsaHSoW15)
GCTGGCGGAGCAAACGCTATTGTCGTGCGCGCCGATGACGCCACCGCTGC
TGCTACGGACGGGGGCGGCGCGCCTCGCCCCGGGGGTGGGGAAAGGGCTG
CCGGAGCAATGGGGGCCCCCAGCGGAGATGATTCTGAGGGAGAGCAGGAG
GTTGGCTCGGTCTCGGTGCCGCGGGCGAAAGGCCTGACCGGCGACGACTT
CCAGTGCAACATCTGCTGGGAGCTACTGGCGAGGCCGGTCACCCTCGTGT
GCGGTCACACCGCGTGCGAGTCGTGTATGGCGAAGTACCTGCGAGCGCAG
GCGCAGGCCCAGGCGCAAATAGGTAACCTTCGAGCCAACCGCATCTCTTG
CCCTGCAGGTGAGTGAGATGTCCGGCTCTTTGTCTTGCAGTAGCCTTCAC
AGGCTCTACTGTAAAAAATCACACGGGATAAAAGTATGGGGAGCGGCTAA
TGGGGGATCGGTCTGGGGTTAGGGTTATGTAGGGGTAGAGTTAGGATTAC
GGAACCCCTGTCTTCGCGAAGACGGTCCTTGTTTTGTCTCCGTTTTTTTT
TTGGGGGGGGGGTGAGGGTTGGGGTTGAGGGCGCTCTTTTAGCCCCTGCT
TTAGCGGCGATGCACATATAATGACGGTGTGCTACTACTGTTTTGGGGCA
AAGGTCGTGAGTGACCGTCGCATGGCGCAGGGGATGGAGGCAAAAAACCT
GGTTGCAGAGCGAAAGGGTGAGAAAGGGGGTGGACCAATGTTATATCTTG
AGTCTTTCCAGCGGTTCGCTCCCCCTAACTCGTACCATCTCCCTCCTCTT
CCTCTTCTCGTTTTTTTCGCTCTTCTTTTGTCCCGCCGCCTTTCTCCCTT
TTGCTTCCGCAAAGCAGGGTGTCAGCGCATGATCCCTCTCGTGCTCCCAG
AGGTGACCACCATGGTCCAGAAGCTTCTGACCAGGGGCTTCCCGCGCGCC
TATCAGGACCGGCTTCAGGAGACCGAGCCTGAGCGTGCCCTCGTCTCGCA
GGTCGGTTACGGTAGCTGCCTGCTGCGTGTGTGTGCTGTGAGCCGCGTAC
GTACGTACCCCCCCGCGCTTTTGTGGGCGTGTGTGTGGGTTTGTGTGTTT
TTTGCATGCCGCGGAGAGCACGCTCTGAATACGCTCTCAACGGCCTGCTC
GGTTGGATTTGATCGACATGCCGGTGGCGCTTTTCGGTGTATACAAACGG
GTCAAAACGTGCATCTGGGGTCAGGTCGTCATCATGCATGATCGACCTGT
GGCACACGTGAAGGCCCCGTGAGTTCGGCTTGGCGGCATCGGGTAGATGG
ACACACAAACTTCTCCCCTCTCCCTTCGTGTGTGTGTGTGTGTGCGTTAC
ATGGCTATTTTTCATTTGGGGCGCGAGCTTGACGCAGCAAAGAGTGAAAC
GTGGCTAGATAGGGGTTTCCATCCGTACGCACGTAGGCATCCCTCCTGTG
TGGTCCGAACCGCGGCACAAAAACCCGTACCTAGAGTTTTCCCTGTGACC
CAGTCATGACGAAGGCCCAGTAGCAACCAACGTCCTTTTTTCTCAGCATG
TGTGTGCACGCGTATGGATGTATCGCACACACCCGCTCGCGTCGGCCGGC
TGCTCCCTACTTTAGGTGCGACGCATCGCAGACGACGCTGCCGCCGAGTC
GCGCCGGCGGAGGCGACGGCACCACCACC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6478:7816..9494+

>mRNA_L-elsbetiae_contig6478.15155.1 ID=mRNA_L-elsbetiae_contig6478.15155.1|Name=mRNA_L-elsbetiae_contig6478.15155.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1110bp|location=Sequence derived from alignment at L-elsbetiae_contig6478:7816..9494+ (Laminarionema elsbetiae ELsaHSoW15)
GCTGGCGGAGCAAACGCTATTGTCGTGCGCGCCGATGACGCCACCGCTGC
TGCTACGGACGGGGGCGGCGCGCCTCGCCCCGGGGGTGGGGAAAGGGCTG
CCGGAGCAATGGGGGCCCCCAGCGGAGATGATTCTGAGGGAGAGCAGGAG
GTTGGCTCGGTCTCGGTGCCGCGGGCGAAAGGCCTGACCGGCGACGACTT
CCAGTGCAACATCTGCTGGGAGCTACTGGCGAGGCCGGTCACCCTCGTGT
GCGGTCACACCGCGTGCGAGTCGTGTATGGCGAAGTACCTGCGAGCGCAG
GCGCAGGCCCAGGCGCAAATAGGTAACCTTCGAGCCAACCGCATCTCTTG
CCCTGCAGGCTGGCGGAGCAAACGCTATTGTCGTGCGCGCCGATGACGCC
ACCGCTGCTGCTACGGACGGGGGCGGCGCGCCTCGCCCCGGGGGTGGGGA
AAGGGCTGCCGGAGCAATGGGGGCCCCCAGCGGAGATGATTCTGAGGGAG
AGCAGGAGGTTGGCTCGGTCTCGGTGCCGCGGGCGAAAGGCCTGACCGGC
GACGACTTCCAGTGCAACATCTGCTGGGAGCTACTGGCGAGGCCGGTCAC
CCTCGTGTGCGGTCACACCGCGTGCGAGTCGTGTATGGCGAAGTACCTGC
GAGCGCAGGCGCAGGCCCAGGCGCAAATAGGTAACCTTCGAGCCAACCGC
ATCTCTTGCCCTGCAGGGTGTCAGCGCATGATCCCTCTCGTGCTCCCAGA
GGTGACCACCATGGTCCAGAAGCTTCTGACCAGGGGCTTCCCGCGCGCCT
ATCAGGACCGGCTTCAGGAGACCGAGCCTGAGCGTGCCCTCGTCTCGCAG
GGTGTCAGCGCATGATCCCTCTCGTGCTCCCAGAGGTGACCACCATGGTC
CAGAAGCTTCTGACCAGGGGCTTCCCGCGCGCCTATCAGGACCGGCTTCA
GGAGACCGAGCCTGAGCGTGCCCTCGTCTCGCAGGTGCGACGCATCGCAG
ACGACGCTGCCGCCGAGTCGCGCCGGCGGAGGCGACGGCACCACCACGTG
CGACGCATCGCAGACGACGCTGCCGCCGAGTCGCGCCGGCGGAGGCGACG
GCACCACCAC
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