mRNA_L-elsbetiae_contig646.15136.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig646.15136.1
Unique NamemRNA_L-elsbetiae_contig646.15136.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig646.15136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig646contigL-elsbetiae_contig646:15726..18095 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-10_000580.1
Exons4
Model size529
Cds size528
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig646.15136.1prot_L-elsbetiae_contig646.15136.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig646 15726..18094 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816712.8061664-CDS-L-elsbetiae_contig646:15725..158141622816712.8061664-CDS-L-elsbetiae_contig646:15725..15814Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig646 15726..15814 +
1691683758.7765963-CDS-L-elsbetiae_contig646:15725..158141691683758.7765963-CDS-L-elsbetiae_contig646:15725..15814Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig646 15726..15814 +
1622816712.8191576-CDS-L-elsbetiae_contig646:16440..166631622816712.8191576-CDS-L-elsbetiae_contig646:16440..16663Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig646 16441..16663 +
1691683758.7876043-CDS-L-elsbetiae_contig646:16440..166631691683758.7876043-CDS-L-elsbetiae_contig646:16440..16663Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig646 16441..16663 +
1622816712.8294904-CDS-L-elsbetiae_contig646:17507..176761622816712.8294904-CDS-L-elsbetiae_contig646:17507..17676Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig646 17508..17676 +
1691683758.7989511-CDS-L-elsbetiae_contig646:17507..176761691683758.7989511-CDS-L-elsbetiae_contig646:17507..17676Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig646 17508..17676 +
1622816712.843021-CDS-L-elsbetiae_contig646:18047..180941622816712.843021-CDS-L-elsbetiae_contig646:18047..18094Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig646 18048..18094 +
1691683758.8115532-CDS-L-elsbetiae_contig646:18047..180941691683758.8115532-CDS-L-elsbetiae_contig646:18047..18094Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig646 18048..18094 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig646.15136.1

>prot_L-elsbetiae_contig646.15136.1 ID=prot_L-elsbetiae_contig646.15136.1|Name=mRNA_L-elsbetiae_contig646.15136.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=176bp
SSSTLSSSGSGSSSSTRGDSDTEISETDTSSSSNSDSTRSTSEPVAGGGM
PPPTIVSEPIGTFTPTQPAEGPLPGAVATPPAQPVWSGQHPTVVGVPAVG
VPGGYAPPTDAAYSSHPTGYTAAGVGAAYGSWADLEPQLHAQPPYAPTAL
WRQEQAPAGYGVTAQHDSDRTYGVGF
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mRNA from alignment at L-elsbetiae_contig646:15726..18095+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig646.15136.1 ID=mRNA_L-elsbetiae_contig646.15136.1|Name=mRNA_L-elsbetiae_contig646.15136.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2370bp|location=Sequence derived from alignment at L-elsbetiae_contig646:15726..18095+ (Laminarionema elsbetiae ELsaHSoW15)
AGCAGCAGCACCTTGAGCAGTAGCGGCAGCGGAAGCAGTTCAAGCACTCG
GGGAGACAGCGACACGGAAATCAGCGAGACGGATACCAGGTGACAATACA
AGGAGCTGCCAGCTTGTACAGCTCGAGCCTGCACGTGTCCGTTCTTCCCG
TCCCCGTGCCGTTTCGTTCCCCTGCCTCCACGGCACCTCTAACTCAAACC
TGATCCGGGGCCACACATAAACTTAGCAACCGCCGTTCTCGGCAATTAAA
AAACGACGCGTGTCCCGCAGAAGATAACCGGCAAGGGCAACTCCCACGCG
TCATGTCGGCTTACGTTCGTAGTGTATGTACCAGAGAAGGTGTCGACTGG
TGCCAACCACAGACGGTGGCTATACAGCATGGTTCTCTGAAGGAGTTCAC
GCATCTCTGTCGCCGACGTCACACCCATCACTCTATGATACTAAGTTTGT
TTTAGTTCCTGATCAACAACTATGACAAAAGTTCGTCTCTGCGAGTCTCC
CTACCTTGGTCATCTTATTTTTGGCTGTCCCCGCAACGCTAATTTTTCCA
TGGGCGACGACTGCCGATTCGGAACCGATTCTTAGAGCCCAGCCACAGAC
GGCCGAGTTCGAAGCGTTTTGGCCCCAAAAGCGCGAGCCAGTTCCGAGGG
GGACGACGGAACGCCCTAAAAATCTGCCCCCCCCCCCCCCCAACCTATGC
CGTTCGAGAAAGCAGCTCTTCGTCGAACTCGGACTCGACCAGGAGCACCT
CCGAACCCGTCGCCGGCGGCGGAATGCCACCACCGACCATCGTGTCCGAG
CCGATCGGCACCTTCACGCCCACCCAGCCGGCTGAGGGCCCCCTGCCAGG
AGCGGTGGCAACACCGCCCGCCCAGCCTGTGTGGTCAGGACAGCACCCGA
CGGTGGTGGGGGTCCCCGCTGTTGGGGTCCCGGGCGGGGTGAGTGGGTCG
GGGTCCACGGTAAGAAATATATGAAAGGAACGAGCTCCGGACGGAGAACG
CGTCAACAGCTTTGTCATGTCTCATCCGTAACCAGACGAGGGTGCCACCG
GCGCTATGTCACGGAAGCGAGAAGTAGGAGACTCTCCCCTGTGCACAAAT
ATTCACAATACGGCGGGGTGCCCCAGTTCTGCGGCCCTTACGCTTCCGAC
CAGTTGGTTTCACACGGATGGTGGCGGAGGGGCGAGGAAGTGGGGGAGGT
GGCGGCGGGTAGGCCGTTTCTGTCAAAGCCTACGCAACGCCCGCCTTATG
CCTGCTCCAAAGCATGTATATATACCCGAAGCCTCGGGGGTGATTTGTGG
CAGTTCACCGAACACCACGTGTCCACTGAACGCCCTCTGCTCAATACTAA
CGACGACTGCAAAAGTGCCAGAAAAACGACATTTACACCATTAACCCCAT
CTGGGCTCCAGATCCGATATGCTGGCCCTTCGGGTCTATTTTATTTTTCG
TGTAGCTTTTCTTGGGTATAAGTTAGCCTGTGACCACGGGAATTGACCGC
ATCAAGTGTTGGATTAGTACGGACATTGAGAGATACTGGATGGAGAGATC
GGAACGGTTTTTAATGTGAAGACAACATACATACAACAACATACATACCT
GCGTGTTCGTTCTGCGCTGCATTGGCCAACTCACGACCCTCACCTGCGGA
TCAGCCTGAAGGGTGGCAAATCCTAGCTGTCCAGCGAAAAACATTTTTAA
GCCCAAAACCAACCCAATCCTTGTAACCCGCCCCCCCCGGTCCCGCACGC
GCGCGCCTTCGACTCGCGCCCACTGCACGCAGTACGCTCCCCCTACTGAT
GCAGCCTATTCCAGCCACCCTACGGGGTACACCGCTGCTGGCGTTGGAGC
GGCTTACGGCAGCTGGGCCGATCTTGAACCTCAGCTCCACGCGCAACCGC
CGTACGCGCCTACTGCGCTGTGGCGCCAGGAACAAGCACCGGCGGGGTAT
GGTGAGAGCTCGAGTCTCGGTTTGTGGATCTCTCTTTTTCTTTTTCTTGT
GGCTGGCCGTGCCAAATCGTACAGTTCGCCTCTTGCCCCCCCCCCGTACG
GTATCGCACGGGGCATGCGCCCACGCTTTCGGCCGCTCGTTGATTCCGAT
TGTCAATCCTCAACATTTTTCAAAATAAACCAGGAAACCAAAGAAAGAAC
CTCCGGCATAAAAAACTGTCCGGGAAACGAGGCTAACCAAGACATAAAAG
TCGGCGCCTATGGGTGTGCGAGGTGGAAGGGCAAGAAATAACATTACATG
GTTCGCTGACCACGGTTGACCCCCCACCCCCGTGCGCGCTACTGGCCGTC
CCCCGACCTCTCCTCCGAATAGGCGTGACTGCACAGCACGATTCTGACCG
AACGTACGGCGTTGGCTTCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig646:15726..18095+

>mRNA_L-elsbetiae_contig646.15136.1 ID=mRNA_L-elsbetiae_contig646.15136.1|Name=mRNA_L-elsbetiae_contig646.15136.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1056bp|location=Sequence derived from alignment at L-elsbetiae_contig646:15726..18095+ (Laminarionema elsbetiae ELsaHSoW15)
AGCAGCAGCACCTTGAGCAGTAGCGGCAGCGGAAGCAGTTCAAGCACTCG
GGGAGACAGCGACACGGAAATCAGCGAGACGGATACCAGAGCAGCAGCAC
CTTGAGCAGTAGCGGCAGCGGAAGCAGTTCAAGCACTCGGGGAGACAGCG
ACACGGAAATCAGCGAGACGGATACCAGCTCTTCGTCGAACTCGGACTCG
ACCAGGAGCACCTCCGAACCCGTCGCCGGCGGCGGAATGCCACCACCGAC
CATCGTGTCCGAGCCGATCGGCACCTTCACGCCCACCCAGCCGGCTGAGG
GCCCCCTGCCAGGAGCGGTGGCAACACCGCCCGCCCAGCCTGTGTGGTCA
GGACAGCACCCGACGGTGGTGGGGGTCCCCGCTGTTGGGGTCCCGGGCGG
GCTCTTCGTCGAACTCGGACTCGACCAGGAGCACCTCCGAACCCGTCGCC
GGCGGCGGAATGCCACCACCGACCATCGTGTCCGAGCCGATCGGCACCTT
CACGCCCACCCAGCCGGCTGAGGGCCCCCTGCCAGGAGCGGTGGCAACAC
CGCCCGCCCAGCCTGTGTGGTCAGGACAGCACCCGACGGTGGTGGGGGTC
CCCGCTGTTGGGGTCCCGGGCGGGTACGCTCCCCCTACTGATGCAGCCTA
TTCCAGCCACCCTACGGGGTACACCGCTGCTGGCGTTGGAGCGGCTTACG
GCAGCTGGGCCGATCTTGAACCTCAGCTCCACGCGCAACCGCCGTACGCG
CCTACTGCGCTGTGGCGCCAGGAACAAGCACCGGCGGGGTATGTACGCTC
CCCCTACTGATGCAGCCTATTCCAGCCACCCTACGGGGTACACCGCTGCT
GGCGTTGGAGCGGCTTACGGCAGCTGGGCCGATCTTGAACCTCAGCTCCA
CGCGCAACCGCCGTACGCGCCTACTGCGCTGTGGCGCCAGGAACAAGCAC
CGGCGGGGTATGGCGTGACTGCACAGCACGATTCTGACCGAACGTACGGC
GTTGGCTTCGCGTGACTGCACAGCACGATTCTGACCGAACGTACGGCGTT
GGCTTC
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