mRNA_L-elsbetiae_contig6455.15128.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6455.15128.1
Unique NamemRNA_L-elsbetiae_contig6455.15128.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6455.15128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6455contigL-elsbetiae_contig6455:4080..7625 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size598
Cds size435
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6455.15128.1prot_L-elsbetiae_contig6455.15128.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6455 4241..7625 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816712.1351597-UTR-L-elsbetiae_contig6455:4079..42401622816712.1351597-UTR-L-elsbetiae_contig6455:4079..4240Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6455 4080..4240 +
1691683758.3532484-UTR-L-elsbetiae_contig6455:4079..42401691683758.3532484-UTR-L-elsbetiae_contig6455:4079..4240Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6455 4080..4240 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816712.148245-CDS-L-elsbetiae_contig6455:4240..43151622816712.148245-CDS-L-elsbetiae_contig6455:4240..4315Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6455 4241..4315 +
1691683758.3634334-CDS-L-elsbetiae_contig6455:4240..43151691683758.3634334-CDS-L-elsbetiae_contig6455:4240..4315Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6455 4241..4315 +
1622816712.1606596-CDS-L-elsbetiae_contig6455:6496..66711622816712.1606596-CDS-L-elsbetiae_contig6455:6496..6671Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6455 6497..6671 +
1691683758.3731039-CDS-L-elsbetiae_contig6455:6496..66711691683758.3731039-CDS-L-elsbetiae_contig6455:6496..6671Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6455 6497..6671 +
1622816712.1741667-CDS-L-elsbetiae_contig6455:7440..76251622816712.1741667-CDS-L-elsbetiae_contig6455:7440..7625Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6455 7441..7625 +
1691683758.3825336-CDS-L-elsbetiae_contig6455:7440..76251691683758.3825336-CDS-L-elsbetiae_contig6455:7440..7625Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6455 7441..7625 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6455.15128.1

>prot_L-elsbetiae_contig6455.15128.1 ID=prot_L-elsbetiae_contig6455.15128.1|Name=mRNA_L-elsbetiae_contig6455.15128.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=145bp
METPTAVRPTSLALAESQNIQPNGQGGGAGVQSAKSAMNATANSAGFVSG
SASSSAAVAGSAPAATTTAKSSCPGAAVVGSVEGKSSKLDRQGAAGGVGA
APPATPAAAPPARAAAATVAAAAATAAAFATPAAAPAFATPAAPA
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mRNA from alignment at L-elsbetiae_contig6455:4080..7625+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6455.15128.1 ID=mRNA_L-elsbetiae_contig6455.15128.1|Name=mRNA_L-elsbetiae_contig6455.15128.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3546bp|location=Sequence derived from alignment at L-elsbetiae_contig6455:4080..7625+ (Laminarionema elsbetiae ELsaHSoW15)
GCTCTGCTTGCTGCTTGCTACGTATTTTTGAGGTCGAGATTTTCCCAGTG
CATTGGACATCGGTGTGCCTGCCATAGTTAGTTTGGAGATCCACCTCGCT
CGGATACACAAATCGTCTTCGCAACGGCTGTGATCCTACGGAAGAGACAG
AGGCGCACAAAATGGAGACACCCACGGCCGTCCGCCCTACCTCGCTTGCT
CTCGCCGAGTCGCAGAACATCCAACCGAATGGCCAGGTGAGCCTTTTCTT
TCTGGTCTCGATGCTGTGGGGCTCCTTCACGCCCGGACGCCTACGGTGGG
TGGTCTAGTAGTCGGAGGGTGAAAGTTAGTTTTTTTTGTTTTTATCCCCA
ACGGTTTTCTCGGATGCACGCCAGAGAAGTAAAGCCCACACCGCATAAAT
ATACTCTTTCTTTCTCTCATGTGTGTTAGATCTGGCTTGGAAACCAAACC
AGGTTCAAGGTAGAAGAAGGCCTGATCTAGGCGCTGGCGTTGATGATGAT
AAGTCGTCAGGATTGTTTGTGGTGGCTGTTTTTTTCCATTCCCCCGCCCA
AAATAACACAAATTGCGCGAACGCTACTGCGCTTCCATTTTTTTTTTGCA
ACGGCGGCGCTCCTTCGTTGGTACAGACACAGGCAGGCAGGTTCGCTCGT
GGGCTATACTTACATAGATTCATCTCCTCGTATCCGAATTATTCCATCCG
GTGTCTGGTTTCAGAGCAAGATCTACAATATGTAGGAGAAGTAACTTCTC
AATATTCTCTATGTCCCGATCACAGCAGTGGTATTGTACAATGCATTTGT
TATAGCGTGCGTCTGTCTCATCTGATGTTGAAAGAAACCACAGCAGCACA
GCAGCAGTTAATCAAAAATGGAACCTATCTAACCCACATTGAGACGGGAC
ACTTGAGCTGCTTGTTGGTTGTGCGCGAGGAACCAAAGAATCACAACACG
CGCGTGGGGTATTAATGTGTGTGTGCGTGTGTGTGTGTGTCTGTGTGTCT
GTGTGTCTGTGTGTGTGTGTTTTTTCGTCCCATCTACAATGTACCTGATG
TTTCCGTAGTCTAGATACTTACATCCTCTTCCCTTTTTTAGGGTAAGTTA
CCGTAGGTGACACAAGATAAGACACCCCCTGGACCGATTTTCAAAGCTCG
AGTTCTCCACAGCAAGCAGAGCGTCAGTCCCGAAAAGGGCGGCGTTGGAA
AGATCTCGTCGAGAGCTGTCCGAAAATGTGGCGTTTGTGGTTAGAATCGT
ATTCGTTGCGGAGTAACCAAGCTTTCAATCTCGGTCCAGGGGGTGTCTTA
TCTAATGTCACCTACGGTATCCTGTGACCACGGGAACCGACCTCGTCAGT
GTTGACATGAAGCTACTGGATAGAGATATCGGAACGGCTTTTAATGTGAA
GACAACACGCACACTATGTAGTTGTGGCATTCTGGCGCCTGTCGTCACCT
GTTGGTGCACGTGCCCTTTTCGGCCTTTCGGTGTGTATCTACATCTATAG
ATACGTGCATACCGTAGGTGACACAAGATACCACACCCCCTGGACAGATT
TTCAAAGCTCGATTCCTCCTCAGCAAGAAGAGTGCCAGTGCCGAAAGAGG
TGGCGTTGGAAAGATCTAGTCGAAGGCTGTCCGAACGTGTGGTGCTTGGT
GCTGGCACCTTCTTCGTTACGGAGTAACGGATCTCTAAAGTTCGGTCCAG
GGGGTGTGGTATCTTGTGTCACCTACGGTACGTGCATACCAGCCGGGGGT
CACACAGGAAGGTGAACACCCGTCGGTGTGTATGTAGATACACAAATTAC
ACGCAGAGACTGCCCGCTACATACATGGGATTGATTGTATCGTGATGATG
TACCAATACAGATTTCTCTAGTCAAGAGTCCGGATCGTGATTTTGCACAC
CGTTCGGTATACTAAAGAGTTCGTGGATATGTATGACTACAACTAATACT
CCTCCGTTGGGGGGGCGGGGTATATGCTCCGGAGTATTGTATTGAGTTAA
ACGCGCCTCTCGCTATCGTCCAAGGTACGGGACGCGTCGTACCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCGCGGTCGGGGGGGGGGGGGGGGGGGTTCGGGGTTGTGGTTTTGGT
TATACGCCCCCCCCCCCCCCCCCCCGCGGCCGGGCCGGCGCCCCCCCCCC
CCCCCCCCCCCCCCGCCCCCCCCCCTCTCCCTCTCTGCAAGGGCCGCAAG
CTAACCAACCTCCCGAATAATTTCCCGCCACCGGCGCGCTTCGCTTGGAC
TGCCCGCTCGTGAGCAGGGCGGAGGAGCAGGAGTGCAGTCAGCCAAGAGC
GCGATGAACGCTACTGCTAATAGCGCTGGTTTCGTGTCCGGTTCTGCTTC
TTCCTCCGCCGCTGTGGCCGGCTCGGCCCCCGCTGCCACCACCACCGCTA
AGTCTTCTTGTCCCGGTGCCGCCGTCGTCGGATCTGTAGAAGGTGAGGAA
ACTACTTCTTCTTTCAGCGGTACTCTCTCTTGCACATATGTGTGCAGCGT
AGGTGACACAAGATACCACACCCCCTGGACCGGATTTTAGAGCTCCATTA
CTCCGTAACAAAGACGGCGCCAGCACCAAACGACAGATTTTCGAACAGCA
CTCGACTAGATATTTCCAACGCCACCCCTTCCGGCACTGGCACCCTCTTC
GTTACGGAGTAATGCAGCTCTAAAATTCGGTCCGGGGGGTGTGGTACCTT
GTGTCACCTACGGTACTATGTACAGAGGAGTTTGTAATGCCTGTCATCGA
ACTTCCTTCCACTCAGTTTTTTTTTTTTTTTTTCACGGATACCCACACTT
AAAAGCTTTTTTTTTTTTATGCATGCATGCATGAATGCATGATATTCGCC
GCTGTTCGGAAACAGCACGTTCGGCTCTCTGGTGCGGTGGTCAGCGCTGC
TCGTGTGTTCGGACGGTGCTTAAGGCGGCCTTCCAATTGTTCGTATACCT
TTTGTATGTACCTAAGAGCGATTCTTCGTCTTGGGTCTGTTCCCCTGCCG
AGAACTCAGCACGAGGAGAGCACCATGAAGTGGTGGTGGTTACCACACCG
GACGGCAGTCATGGTCATCGTGTTTGCTGTTTTCTCCGAGGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GCTCAACTCCTTCCTGCCCGCCCCACTCCCCGCCCACACGCCATCCCGAC
CGCAACACTAGGGAAATCGTCCAAGCTGGATCGGCAAGGGGCCGCCGGCG
GGGTAGGCGCCGCGCCGCCAGCAACACCGGCAGCAGCGCCACCAGCAAGA
GCAGCGGCGGCGACAGTGGCGGCGGCGGCAGCGACAGCGGCGGCATTCGC
AACGCCAGCAGCGGCACCAGCATTCGCTACGCCAGCGGCGCCGGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6455:4080..7625+

>mRNA_L-elsbetiae_contig6455.15128.1 ID=mRNA_L-elsbetiae_contig6455.15128.1|Name=mRNA_L-elsbetiae_contig6455.15128.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=870bp|location=Sequence derived from alignment at L-elsbetiae_contig6455:4080..7625+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGACACCCACGGCCGTCCGCCCTACCTCGCTTGCTCTCGCCGAGTC
GCAGAACATCCAACCGAATGGCCAGATGGAGACACCCACGGCCGTCCGCC
CTACCTCGCTTGCTCTCGCCGAGTCGCAGAACATCCAACCGAATGGCCAG
GGCGGAGGAGCAGGAGTGCAGTCAGCCAAGAGCGCGATGAACGCTACTGC
TAATAGCGCTGGTTTCGTGTCCGGTTCTGCTTCTTCCTCCGCCGCTGTGG
CCGGCTCGGCCCCCGCTGCCACCACCACCGCTAAGTCTTCTTGTCCCGGT
GCCGCCGTCGTCGGATCTGTAGAAGGGCGGAGGAGCAGGAGTGCAGTCAG
CCAAGAGCGCGATGAACGCTACTGCTAATAGCGCTGGTTTCGTGTCCGGT
TCTGCTTCTTCCTCCGCCGCTGTGGCCGGCTCGGCCCCCGCTGCCACCAC
CACCGCTAAGTCTTCTTGTCCCGGTGCCGCCGTCGTCGGATCTGTAGAAG
GGAAATCGTCCAAGCTGGATCGGCAAGGGGCCGCCGGCGGGGTAGGCGCC
GCGCCGCCAGCAACACCGGCAGCAGCGCCACCAGCAAGAGCAGCGGCGGC
GACAGTGGCGGCGGCGGCAGCGACAGCGGCGGCATTCGCAACGCCAGCAG
CGGCACCAGCATTCGCTACGCCAGCGGCGCCGGCAGGAAATCGTCCAAGC
TGGATCGGCAAGGGGCCGCCGGCGGGGTAGGCGCCGCGCCGCCAGCAACA
CCGGCAGCAGCGCCACCAGCAAGAGCAGCGGCGGCGACAGTGGCGGCGGC
GGCAGCGACAGCGGCGGCATTCGCAACGCCAGCAGCGGCACCAGCATTCG
CTACGCCAGCGGCGCCGGCA
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