mRNA_L-elsbetiae_contig6438.15110.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6438.15110.1
Unique NamemRNA_L-elsbetiae_contig6438.15110.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6438.15110.1 vs. uniprot
Match: D7FLH9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLH9_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 2.910e-28
Identity = 72/137 (52.55%), Postives = 88/137 (64.23%), Query Frame = 2 
Query:    5 QGCSSNSTPAVSLLLKRCLDAASKVRALAIRLLVDEFRLGIGAAGATLARAVLLP-PSNQGQAGSXXXXXXXXXXXXXXXXRLQDSAGDSS--------PLLGELLRHRKTLEESDRKRFPRLLRGLVDAVICGDTL 388
            QGCSS+  PAVSLLL+RCLDAA KVRALA+RLLVDEFR+GIGA GA+LARAVL P P+  G   +                       +           LLGEL+RH +TLEE+D +RFP LLRGLV+AV+ G++L
Sbjct:  386 QGCSSDCVPAVSLLLERCLDAAPKVRALALRLLVDEFRVGIGAVGASLARAVLSPSPAADGSGSTVGTSRGAPDSREWPRGNRSPDVWEGGLQEGENGVALLGELMRHHQTLEETDSERFPLLLRGLVEAVLRGESL 522
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BLAST of mRNA_L-elsbetiae_contig6438.15110.1 vs. uniprot
Match: A0A6H5KPL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPL7_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 1.350e-26
Identity = 70/138 (50.72%), Postives = 89/138 (64.49%), Query Frame = 2 
Query:    5 QGCSSNSTPAVSLLLKRCLDAASKVRALAIRLLVDEFRLGIGAAGATLARAVLLPPSNQGQAGSXXXXXXXXXXXXXXXXR----------LQDSAGDSSPLLGELLRHRKTLEESDRKRFPRLLRGLVDAVICGDTL 388
            +GCSS+  P VSLLL+RCLDAA KVRALA+RLLVDEFR+G+GA GA+LARAVL P  +  ++GS                           LQ   G  + LLGEL+RH +TL+E+D  RFP LLR LV+AV+ G++L
Sbjct:  444 EGCSSDCVPGVSLLLERCLDAAPKVRALALRLLVDEFRVGVGAVGASLARAVLSPSPSADRSGSAVGTKRAAPDSRYGPRGNRSPGVWEGGLQGGEGGVA-LLGELMRHHQTLQETDSDRFPLLLRNLVEAVLRGESL 580
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6438.15110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FLH9_ECTSI2.910e-2852.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPL7_9PHAE1.350e-2650.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6438contigL-elsbetiae_contig6438:5772..7902 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size408
Cds size408
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6438.15110.1prot_L-elsbetiae_contig6438.15110.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6438 5772..7902 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816710.3810322-CDS-L-elsbetiae_contig6438:5771..58461622816710.3810322-CDS-L-elsbetiae_contig6438:5771..5846Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6438 5772..5846 -
1691683757.0849297-CDS-L-elsbetiae_contig6438:5771..58461691683757.0849297-CDS-L-elsbetiae_contig6438:5771..5846Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6438 5772..5846 -
1622816710.3957062-CDS-L-elsbetiae_contig6438:6498..67551622816710.3957062-CDS-L-elsbetiae_contig6438:6498..6755Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6438 6499..6755 -
1691683757.1167855-CDS-L-elsbetiae_contig6438:6498..67551691683757.1167855-CDS-L-elsbetiae_contig6438:6498..6755Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6438 6499..6755 -
1622816710.4140615-CDS-L-elsbetiae_contig6438:7826..79021622816710.4140615-CDS-L-elsbetiae_contig6438:7826..7902Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6438 7827..7902 -
1691683757.1355672-CDS-L-elsbetiae_contig6438:7826..79021691683757.1355672-CDS-L-elsbetiae_contig6438:7826..7902Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6438 7827..7902 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6438.15110.1

>prot_L-elsbetiae_contig6438.15110.1 ID=prot_L-elsbetiae_contig6438.15110.1|Name=mRNA_L-elsbetiae_contig6438.15110.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=136bp
MSGLFFEFHTGCFPSLEEMPRRGIKGAGACHPTPGGRVQAGHRCRRCNPR
PGCPLAAIQPRPGRKCDDNDKRQRWWRRRRRKVAGQRGRQQSAAWGAATA
PEDAGRIGQEKVPQAVEGPRGRRHLRRHPPSPQPGH
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mRNA from alignment at L-elsbetiae_contig6438:5772..7902-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6438.15110.1 ID=mRNA_L-elsbetiae_contig6438.15110.1|Name=mRNA_L-elsbetiae_contig6438.15110.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2131bp|location=Sequence derived from alignment at L-elsbetiae_contig6438:5772..7902- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCAGGGCTGTTCTTCGAATTCCACACCGGCTGTTTCCCTTCTCTTGA
AGAGATGCCTCGACGCGGCATCAAAGGTGATCGATCGGAGGGCGAAAGAG
ACGCCCCCTGCCCATTAGGCCTTGACTCCGTTGGCCACTTTTTTCGTGAT
ATAGATACATACACCTTACTCTTCTGTACACTAAACTGAAAATATAATGA
CATCTTTTGTTCCTCCGCGACTTAACAAATGGCCGATGGTGACTCCGTCG
GCCACTGTTTTTTGTGGTCTAAATACATACACCTTTCTCTTCTATACACT
TAAACTGAGTATAATGATAAGGTTTTGTTCCTCCGCGACTCCACCAAAAT
GGCTGACGGAGTCAAGGTCCGCTGCCCATGCTGTGGGTAGATTAGGGTGG
GCAAAAGGCGGCGTGTTGTAAAGCCTGTCCCGGTGTCCTTACAGGCAGCG
CCCAAGGCGACGTGCGTTGCTTAAAAACAAAATGTCTACGAATGTCAGCG
GTCAACAGTAGTACCGGCCCGCTAGTAAGAAAGCTTCGAGTAAGAAGCGA
GTAAGAAGCGAAGCCTGAGATTTTCAGGTTTATTAAGAAAGTGTCCATCC
AGCCTCACTTAAGGGCGGCGAGTGCCTCATTAAATCCTACACACTACAAA
AGAAAGTGTTATGCTCGACTTCCAACTCAACATAAGAAAGCCAGCCTGAG
CCCGATTTCAGATTTCTTACCAGCGGGCCGGTACTGTTGTATGCACGTCC
CACCTGTGCAAAAGAACGCCGTTCCAAGGGGACTATTGTAGACATACCAC
GTAACCCCCCCCCCCCTCCCCTCACCGCCCCGGACTGCTGGCACACAATC
AGCACGCCGCACAACAACAGCAGTTCGTGGTTTTATTTTTGCCCACGGGA
TGTTTGTGGGATTAAGTATGGTATCTTCCGTTTGCGCGCGCGAAACAAAT
AACGCCGCCTTCCTCCTCCTCCTCCTCCTCCTCCAGCTTTAGTTTATTTT
ATTTTTTTCGAGGTTGCGAGGTATGTCAGGAGGATAGGGCTGCAAGATAT
GCTGAATCAACGCCGATCGTTCGTCTTTTCCGCTCTTCTTGATGAGTCTG
AATTAGCGCATTTTGTCTAAATTCTCCTTCCCCCACCCGGCGAACAGGTG
CGGGCGCTTGCCATCCGACTCCTGGTGGACGAGTTCAGGCTGGGCATCGG
TGCCGCCGGTGCAACCCTCGCCCGGGCTGTCCTCTTGCCGCCATCCAACC
AAGGCCAGGCAGGAAGTGCGACGACAACGACAAGCGCCAGAGGTGGTGGC
GGCGGCGGCGGCGGAAGGTTGCAGGACAGCGCGGGCGACAGCAGTCCGCT
GCTTGGGGAGCTGCTACGGCACCGGAAGACGCTGGAAGAATCGGACAGGA
AAAGGTACACTACCGTAGGTGACACAAGATACCACACCCCCCGGACCGAA
TTATAGAGCTGCATTACTCCGTAGCGAAGAGGGTGCCAGTGCCGGAAGGG
GTGGCGTTGGGAAGATCTAGTCGAGGGCTGTTCGAACATCATGTGTTGCT
TGGTGCTGGCACCTTCTTCGTTACGGAGTAATGGAGCTCTAAAGTTCGGT
CCAGGGGGTGTGGTGTCTTGTGTCACCTACGGTACTTGGTCTATGGAAGA
ACTGGACAGGGGGAGGGGGGGTAAACGTACGTTTTGCCTGTGTGTTCCTG
GGAAGAGGGAGTTGAGAGCTGCAGCTGGACGGTTCTGAGTGGCAAGCTCC
CTGGCTTTGAACGCCGCAAGTCTCGGGGCCCTAAGTACGGCGCGCGAGGC
GAACCCGCCACAGCTGATTCGGGCGAAACGATTGCTGAAGTAAGTTAATA
GTTTCCATCGCAGCGGTTGAGCTGTAGCCGACAGCCATATAACGGGGGCG
GCGCCGACGCGGCGCTGACGCGGCTGATCGCCAACAGCCCCTGCCCTCAC
AGAGAGTGAGGATGGAAATTGAGCACGCATCTCAAACAAGTATTTACTCG
CAATCTTCTTCAAAGCGCGGCGCATTCTGCTTTCGCTCGCCCTCCCTCGC
CATCAGGTTCCCCAGGCTGTTGAGGGGCCTCGTGGACGCCGTCATTTGCG
GCGACACCCTCCGTCGCCGCAGCCCGGCCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6438:5772..7902-

>mRNA_L-elsbetiae_contig6438.15110.1 ID=mRNA_L-elsbetiae_contig6438.15110.1|Name=mRNA_L-elsbetiae_contig6438.15110.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=816bp|location=Sequence derived from alignment at L-elsbetiae_contig6438:5772..7902- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCAGGGCTGTTCTTCGAATTCCACACCGGCTGTTTCCCTTCTCTTGA
AGAGATGCCTCGACGCGGCATCAAAGATGTCAGGGCTGTTCTTCGAATTC
CACACCGGCTGTTTCCCTTCTCTTGAAGAGATGCCTCGACGCGGCATCAA
AGGTGCGGGCGCTTGCCATCCGACTCCTGGTGGACGAGTTCAGGCTGGGC
ATCGGTGCCGCCGGTGCAACCCTCGCCCGGGCTGTCCTCTTGCCGCCATC
CAACCAAGGCCAGGCAGGAAGTGCGACGACAACGACAAGCGCCAGAGGTG
GTGGCGGCGGCGGCGGCGGAAGGTTGCAGGACAGCGCGGGCGACAGCAGT
CCGCTGCTTGGGGAGCTGCTACGGCACCGGAAGACGCTGGAAGAATCGGA
CAGGAAAAGGTGCGGGCGCTTGCCATCCGACTCCTGGTGGACGAGTTCAG
GCTGGGCATCGGTGCCGCCGGTGCAACCCTCGCCCGGGCTGTCCTCTTGC
CGCCATCCAACCAAGGCCAGGCAGGAAGTGCGACGACAACGACAAGCGCC
AGAGGTGGTGGCGGCGGCGGCGGCGGAAGGTTGCAGGACAGCGCGGGCGA
CAGCAGTCCGCTGCTTGGGGAGCTGCTACGGCACCGGAAGACGCTGGAAG
AATCGGACAGGAAAAGGTTCCCCAGGCTGTTGAGGGGCCTCGTGGACGCC
GTCATTTGCGGCGACACCCTCCGTCGCCGCAGCCCGGCCACGTTCCCCAG
GCTGTTGAGGGGCCTCGTGGACGCCGTCATTTGCGGCGACACCCTCCGTC
GCCGCAGCCCGGCCAC
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