mRNA_L-elsbetiae_contig11731.1508.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig11731.1508.1 vs. uniprot
Match: D7FT49_ECTSI (Translesion synthesis DNA polymerase eta splice variant n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT49_ECTSI) HSP 1 Score: 397 bits (1021), Expect = 2.470e-125 Identity = 292/581 (50.26%), Postives = 328/581 (56.45%), Query Frame = 1
Query: 127 WWVRPKGELTEDERLLACGAAVVSTLRAAVRSELGYSCTAGVAHNKLLAKLCSNMHKPNAQTVLPLNKVERVFRALPVERVRGWGGKFGVKIMEKLGVSTAGEVAAVGATELQRALGDEEGWKAWEKANGVDRDPVKARSAPKSVGCSKTFPGKAKLTSLSEIERWLSELSKELVLRLEEVRQSDGQVPSKLTVSFGEIQKQIPRLSMLGVSVHGFTDARKSTPSIQSFFGASSTS--------------GGTXXXXXXXXXPVPSPPVLAPR----KPARASSSGNRANGLLGFPAATA-VAVSE-GRSEAGVKRRRPG--NGAEEGGEGEAGARRAEADTPHAVAGGGGDGSKVRGGISAGSGPGSGD-WESGARGGGHGASRGAVTLLGEEGGQQRQRELAGGDADVRCGGVRDSGTGNGKEXXXXXXXXXXXXXXXXXXXXXXX------------AAGGAESGGDDNAYGVQF--CGIVRGRGESADSQSC---EVVLVPKEEAERGREGNKQAAQTAGGEGLVSSRGGFDDGADADGQPRAMFGKGGASGVFGEVDPGVLAELPPDIQREIWMQQ 1749
WW R + T D+ LL+CGAAVVS LRAAVRSELGYSCTAGVAHNKLLAKLCSNMHKPNAQTVLPL+KVE VF LPVERVRGWGGKFGVK+MEKLGVSTAGEVAAVGA ELQR LGDEEGW+AWEK+N + RDPV ARSAPKSVGCSKTFPGK KLTS SEIERWLSELSKEL+ RL E ++ +GQ PSKLTVSF +Q Q PRL+MLGVS HGF D+RK T SIQSFFGA+ + GGT P + R + RA +GN LGFP ATA VAV E R+ G KR RP + AE GG GA RA D GG GD + GG S S D WE A + EGG L G G R+ G KE AA A D G + G+ GR ++ ++ + L P A G E GG GA+A R +FG+GG+SGVFGEVDP VLAELPPDIQREIWMQQ
Sbjct: 280 WWARTQEAFTRDQELLSCGAAVVSRLRAAVRSELGYSCTAGVAHNKLLAKLCSNMHKPNAQTVLPLDKVEVVFHTLPVERVRGWGGKFGVKMMEKLGVSTAGEVAAVGAAELQRVLGDEEGWRAWEKSNAICRDPVNARSAPKSVGCSKTFPGKTKLTSFSEIERWLSELSKELISRLVEQQEGEGQTPSKLTVSFAALQ-QAPRLTMLGVSAHGFADSRKDTRSIQSFFGAAPAAAALEPSSSEEVPRRGGTANLSSSAWYPRATDAGRGRRCGVDEAGRARPTGN----ALGFPKATAAVAVEEEARAAGGCKRPRPPEEDAAEAGGAD--GALRAGRDVD---GGGEGDRAATDGGSS------SVDFWEMSA-------AXXXXXXXXXEGGGDHAPALREGQYRRDRGREREDDEGYRKEGDDDAVPLHVVAPREINTAQICEGQGKRCREEEAAAAAAAPRSVDARMAGREGDPAGVKEGRHDTVVGRAGLEERLGLSPATAAXXXXXXXXXXXDGIGDERFHGDGGG---GAEASSGHRPLFGRGGSSGVFGEVDPAVLAELPPDIQREIWMQQ 834
BLAST of mRNA_L-elsbetiae_contig11731.1508.1 vs. uniprot
Match: A0A6H5K6B1_9PHAE (UmuC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6B1_9PHAE) HSP 1 Score: 318 bits (814), Expect = 1.550e-96 Identity = 251/588 (42.69%), Postives = 295/588 (50.17%), Query Frame = 1
Query: 247 GVAHNKLLAKLCSNMHKPNAQTVLPLNKVERVFRALPVERVRGWGGKFGVKIMEKLGVSTAGEVAAVGATELQRALGDEEGWKAWEKANGVDRDPVKARSAPKSVGCSKTFPGKAKLTSLSEIERWLSELSKELVLRLEEVRQSDGQVPSKLTVSFGEIQKQ--------------------------------IPRLSMLGVSVHGFTDARKSTPSIQSFFGASST-----SGGTXXXXXXXXXPVPSPPVLAPR-------------KPARASSSGNRANGLLGFPAATAVAVSEGRSEAGVKRRRPGNGAEEGGEGEAGARRAEADTPHAVAGGGGDGSKVRGGISAGSGPGSGDWESGARGGGHGASRGAVTLLGEEGGQQRQRELAGGD---ADVRCGGVRDSGTGNGKEXXXXXXXXXXXXXXXXXXXXXXXAAGGAESGGDDNAYGVQFCGIVRGRGESADSQSCEVVLVPKEEAERGREGNKQAAQTAGGEGLVSSRGGFDD----------------------------------GADADGQPRAMFGKGGASGVFGEVDPGVLAELPPDIQREIWMQQ 1749
GVAHNKLLAKLCSNMHKPNAQTVLPL+KVE VF LPV RVRGWGGKFGVK+MEKLGVSTAGEVAAVGA ELQR LGDEEGW+AWEK+N + RDPVKARSAPKSVGCSKTFPGKAKLTS SEIERWLSELSKEL+ RL E ++ +GQ PSKLTVSF +Q++ PRL+MLGVS HGF D+RK T SIQSFFGA+ S + PS R + ARA +GN LGFP TA A+ E R+ G KR RP E EA AEA G DG+ +R G + SG + + A G + E+ +R+RE GD A G G +E G Y A+ +S + +V GREG+ QA G V R G ++ G D + + R +FG+GG+SGVFG++DP VLAELPPDIQREIWMQQ
Sbjct: 60 GVAHNKLLAKLCSNMHKPNAQTVLPLDKVEAVFHTLPVGRVRGWGGKFGVKMMEKLGVSTAGEVAAVGAAELQRVLGDEEGWRAWEKSNAICRDPVKARSAPKSVGCSKTFPGKAKLTSFSEIERWLSELSKELISRLVEQQEGEGQTPSKLTVSFAALQQKGRSKGVSRCCRMVKPELRPVVEACMKMVRAYSAPRLTMLGVSAHGFADSRKDTRSIQSFFGAAPAAVALESSSSEEVPRRGGIANPSSSAWYRRATDEGRGRRRGVDEAARARPTGN----ALGFPKRTAAAMEEARAAGGYKRPRPP-------EDEA----AEA---------GRDGT-LRAGRNVDSGR---ESDRAATDDGRSSVDFWAMSAAED---ERRREEGEGDEGYAPAPRDGQYRRDRGREREDDEGQRKEGDDDAVPLHVVTPREINTSQICQGQGKRYREXXXXXXXXXXXXAEPRSVDARMV-------GREGD-QAGVQEGRHDTVGGRAGLEERLGSSAATAXXXXXXXXXXADGIGDERFHGDGGGGVDVNSRHRPLFGRGGSSGVFGDIDPAVLAELPPDIQREIWMQQ 608
BLAST of mRNA_L-elsbetiae_contig11731.1508.1 vs. uniprot
Match: A0A2P6TXE9_CHLSO (DNA polymerase eta isoform C n=3 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TXE9_CHLSO) HSP 1 Score: 191 bits (484), Expect = 8.610e-48 Identity = 98/197 (49.75%), Postives = 131/197 (66.50%), Query Frame = 1
Query: 121 AYWWVRPKGELTEDERLLACGAAVVSTLRAAVRSELGYSCTAGVAHNKLLAKLCSNMHKPNAQTVLPLNKVERVFRALPVERVRGWGGKFGVKIMEKLGVSTAGEVAAVGATELQRALGDEEGWKAWEKANGVDRDPVKARSAPKSVGCSKTFPGKAKLTSLSEIERWLSELSKELVLRLEEVRQSDGQVPSKLTVS 711
A WW RP E ERLLAC AA V+ LR AVR ELGY+C+AG+AH KL+AKLCS +HKP QTVLP + V + LPV ++RG GGKFG ++ +LG++T GE+AAV L+ A GD++ + A GV D V+ R+ PKS+ C KTF G+ L S+ + +WL EL+ EL RLE+ R+ + +VP LTV+
Sbjct: 2065 ASWWQRPPHEWQPGERLLACAAAAVAELRQAVREELGYTCSAGIAHTKLMAKLCSGLHKPAQQTVLPASGVPDLLAPLPVSKLRGLGGKFGEQVCSELGITTVGELAAVPLPRLESAFGDKDAQWLYAVARGVTDDAVQERTLPKSLNCGKTFRGRTSLRSMEAVHKWLLELAGELSERLEQEREDNNRVPQLLTVN 2261
BLAST of mRNA_L-elsbetiae_contig11731.1508.1 vs. uniprot
Match: A0A8J9S903_9CHLO (DNA polymerase eta n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9S903_9CHLO) HSP 1 Score: 177 bits (450), Expect = 2.200e-44 Identity = 92/194 (47.42%), Postives = 123/194 (63.40%), Query Frame = 1
Query: 127 WWVRPKGELTEDERLLACGAAVVSTLRAAVRSELGYSCTAGVAHNKLLAKLCSNMHKPNAQTVLPLNKVERVFRALPVERVRGWGGKFGVKIMEKLGVSTAGEVAAVGATELQRALGDEEGWKAWEKANGVDRDPVKARSAPKSVGCSKTFPGKAKLTSLSEIERWLSELSKELVLRLEEVRQSDGQVPSKLTV 708
WW RP G +RLLACGAAVV+ LRAAV ELG+SC+AG+AHNK+LAKL S MHKP+ QTV+ L+ V + ALP+ ++R GGKFG ++M LG+ST GE+AAV L+ G ++ + G+D + VK R PKS+ C KTF G L + +WL EL+ EL R+ R+ + + P LTV
Sbjct: 178 WWNRPVGAWGPGQRLLACGAAVVAELRAAVSRELGFSCSAGIAHNKILAKLASGMHKPSQQTVVTLDCVPGLMAALPISKLRQLGGKFGEEVMAALGISTVGELAAVPLRRLEAVCGQDDAMWLHRLSRGIDDEEVKERQLPKSISCGKTFRGHTALKDFPAVHKWLGELASELEERISADREENERTPGLLTV 371
BLAST of mRNA_L-elsbetiae_contig11731.1508.1 vs. uniprot
Match: I0YLK6_COCSC (DNA/RNA polymerase (Fragment) n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YLK6_COCSC) HSP 1 Score: 168 bits (425), Expect = 2.020e-42 Identity = 89/194 (45.88%), Postives = 120/194 (61.86%), Query Frame = 1
Query: 127 WWVRPKGELTEDERLLACGAAVVSTLRAAVRSELGYSCTAGVAHNKLLAKLCSNMHKPNAQTVLPLNKVERVFRALPVERVRGWGGKFGVKIMEKLGVSTAGEVAAVGATELQRALGDEEGWKAWEKANGVDRDPVKARSAPKSVGCSKTFPGKAKLTSLSEIERWLSELSKELVLRLEEVRQSDGQVPSKLTV 708
WW RP G +RLLACGAAVV+ LRAAVR ELGYSC+AG+AHNK+LAKL S MHKP+ QT++ L+ V + LP+ ++R GGKFG +IM L ++T GE++AV L+ + + G+D + VK R P+S+ C KTF G L + + +WL EL EL R+ R + +VP LTV
Sbjct: 137 WWHRPVGAWGPGQRLLACGAAVVAELRAAVRRELGYSCSAGIAHNKILAKLASGMHKPSQQTLVTLDCVPGLMAGLPIPKLRQLGGKFGEEIMTALNITTVGELSAVPLRRLEAVCSQADALWLHRLSRGIDDEEVKERQLPQSISCGKTFRGHTALKAFPAVHKWLGELGDELEERITADRADNERVPRLLTV 330
BLAST of mRNA_L-elsbetiae_contig11731.1508.1 vs. uniprot
Match: A0A2P6V1H9_9CHLO (DNA polymerase eta isoform A n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V1H9_9CHLO) HSP 1 Score: 174 bits (440), Expect = 2.490e-42 Identity = 100/199 (50.25%), Postives = 124/199 (62.31%), Query Frame = 1
Query: 121 AYWWVRPKGELTEDERLLACGAAVVSTLRAAVRSELGYSCTAGVAHNKLLAKLCSNMHKPNAQTVLPLNKVERVFRALPVERVRGWGGKFGVKIMEKLGVSTAGEVAAVGATELQRALGDEEG-WKAWEKANGVDRDPVKARSAPKSVGCSKTFPGKAKLTSLSEIERWLSELSKELVLRLEEVRQSDGQVPSKLTVSF 714
A WW RP ERLLA AAVV+ LR AV+ ELGYSC+AGVAH KLLAKLCS +HKP QTVLP V + LP+ ++RG GGKFG +M +LG+ T G++AA L+ A G++E W A A GV D V+ R KSV C KTF G+ L L + WL EL EL RLE R+++ +VP LTV+F
Sbjct: 118 AAWWHRPDEAWGPGERLLAAAAAVVADLREAVQRELGYSCSAGVAHTKLLAKLCSGLHKPAQQTVLPAAAVPALLVPLPIPKLRGLGGKFGETVMSELGIETVGQLAATPFARLEAAFGEKEARWLAG-LAVGVTDDAVEERKLAKSVSCGKTFRGRHALRDLDAVRSWLLELGGELSERLEADREANNRVPQLLTVNF 315
BLAST of mRNA_L-elsbetiae_contig11731.1508.1 vs. uniprot
Match: A0A835YI13_9STRA (UmuC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI13_9STRA) HSP 1 Score: 171 bits (433), Expect = 1.370e-41 Identity = 90/194 (46.39%), Postives = 126/194 (64.95%), Query Frame = 1
Query: 127 WWVRPKGELTEDERLLACGAAVVSTLRAAVRSELGYSCTAGVAHNKLLAKLCSNMHKPNAQTVLPLNKVERVFRALPVERVRGWGGKFGVKIMEKLGVSTAGEVAAVGATELQRALGDEEGWKAWEKANGVDRDPVKARSAPKSVGCSKTFPGKAKLTSLSEIERWLSELSKELVLRLEEVRQSDGQVPSKLTV 708
WW RP E T+DERLLACGAAVV+ LR V +LGY+C+ G+AHNK +AKL S +HKP QTV+P ++V + LP+ER+RG GGK G ++ L V+TAGE+AA+ L+R G+++ + A GVD PV R+ KSV C KTF G + + + ++RWL EL+ E+ RL+ R + ++LTV
Sbjct: 183 WWGRPLHEWTKDERLLACGAAVVTRLRDMVTKKLGYTCSGGIAHNKSMAKLASGLHKPKQQTVVPASQVAGLMEGLPLERIRGLGGKLGEQVRSDLKVTTAGELAAMPEATLRRLYGEKQAALLADMARGVDLTPVVQRALSKSVSCGKTFYGNSCIRTEETLKRWLLELAAEIQERLDAQRADHKRAATRLTV 376
BLAST of mRNA_L-elsbetiae_contig11731.1508.1 vs. uniprot
Match: A0A835T5S5_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835T5S5_CHLIN) HSP 1 Score: 170 bits (431), Expect = 5.080e-41 Identity = 95/195 (48.72%), Postives = 123/195 (63.08%), Query Frame = 1
Query: 127 WWVRPKGELTEDERLLACGAAVVSTLRAAVRSELGYSCTAGVAHNKLLAKLCSNMHKPNAQTVLPLNKVERVFRALPVERVRGWGGKFGVKIMEKLGVSTAGEVAAVGATELQRALGDEEGWKAWEKANGVDRDPVKARSAPKSVGCSKTFPGKAKLTSLSEIERWLSELSKELVLRLEEVRQSDGQVPSKLTVS 711
+W RP GE ERLL G VVS LR AV +ELGY+C+AGVAH KLLAKL S +HKPN QTV+ V + R LP+ R+R GGK+G +M +LGVST GE+ AV A L+ G E A G+D V AR APKS+GC KTF G + LT ++++ WL EL+ EL R+E R ++P+ LT++
Sbjct: 533 YWTRPGGEWDPHERLLFAGGLVVSRLRGAVAAELGYTCSAGVAHYKLLAKLGSGLHKPNQQTVVLGRAVPALLRPLPLGRLRSLGGKYGEHVMAQLGVSTVGELWAVPAARLEALFGQEAAAGLVRLAAGMDDGEVAARVAPKSIGCGKTFRGSSALTGMAQVAHWLRELAGELAERIEADRAEHERLPAALTLN 727
BLAST of mRNA_L-elsbetiae_contig11731.1508.1 vs. uniprot
Match: A0A2K3D4A8_CHLRE (Uncharacterized protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3D4A8_CHLRE) HSP 1 Score: 170 bits (430), Expect = 6.880e-41 Identity = 95/195 (48.72%), Postives = 125/195 (64.10%), Query Frame = 1
Query: 127 WWVRPKGELTEDERLLACGAAVVSTLRAAVRSELGYSCTAGVAHNKLLAKLCSNMHKPNAQTVLPLNKVERVFRALPVERVRGWGGKFGVKIMEKLGVSTAGEVAAVGATELQRALGDEEGWKAWEKANGVDRDPVKARSAPKSVGCSKTFPGKAKLTSLSEIERWLSELSKELVLRLEEVRQSDGQVPSKLTVS 711
+W RP E ERLL GA VVS LRAAV +ELGY+C+AGVAH KLLAKL S +HKPN QTV+ V + R LP+ R+R GGK+G ++M +LGVST GE+ +V A L+ G E A G+D V AR APKS+GC KTF G + LT ++++ WL EL+ EL R+E R ++P+ LT++
Sbjct: 491 YWTRPACEWDPHERLLLAGALVVSRLRAAVAAELGYTCSAGVAHYKLLAKLGSGLHKPNQQTVVLGRAVPALLRPLPLCRLRSLGGKYGEQVMSQLGVSTVGELWSVPAARLEALFGQEAAAGLVRLAAGMDDGEVTARVAPKSIGCGKTFRGSSALTGMAQVAHWLRELAGELAERIEADRAEHERLPTALTLN 685
BLAST of mRNA_L-elsbetiae_contig11731.1508.1 vs. uniprot
Match: E1ZR76_CHLVA (UmuC domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZR76_CHLVA) HSP 1 Score: 166 bits (421), Expect = 2.470e-40 Identity = 90/184 (48.91%), Postives = 119/184 (64.67%), Query Frame = 1
Query: 163 ERLLACGAAVVSTLRAAVRSELGYSCTAGVAHNKLLAKLCSNMHKPNAQTVLPLNKVERVFRALPVERVRGWGGKFGVKIMEKLGVSTAGEVAAVGATELQRALGDEEGWKAWEKANGVDRDPVKARSAPKSVGCSKTFPGKAKLTSLSEIERWLSELSKELVLRLEEVRQSDGQVPSKLTVSF 714
ERLLAC + LRAAVR+ELGYSC+AGVAH+KL+AKLCS +HKP QTVLP + V + LP+ +++G GGK G ++M +LGV T G++AAV + L+ A G++E A G D V+ R KSVGC KTF G+ L L+ + +WL EL EL RL+E Q + + LTVSF
Sbjct: 199 ERLLACXXXXAAELRAAVRAELGYSCSAGVAHSKLMAKLCSGLHKPAQQTVLPASAVAALLGQLPIPKLKGLGGKLGERVMSELGVETVGQLAAVPLSRLEAAFGEKEAQWLAALARGATDDKVEERRLAKSVGCGKTFRGRQALRDLAAVHKWLLELGGELAERLQEDLQENSREAKLLTVSF 382 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11731.1508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig11731.1508.1 >prot_L-elsbetiae_contig11731.1508.1 ID=prot_L-elsbetiae_contig11731.1508.1|Name=mRNA_L-elsbetiae_contig11731.1508.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=583bp VAGLSGGDDDDDDEDDDDEDDDDAAAAAAAKEQQVSRSREAYWWVRPKGEback to top mRNA from alignment at L-elsbetiae_contig11731:116..4900+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig11731.1508.1 ID=mRNA_L-elsbetiae_contig11731.1508.1|Name=mRNA_L-elsbetiae_contig11731.1508.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4785bp|location=Sequence derived from alignment at L-elsbetiae_contig11731:116..4900+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig11731:116..4900+ >mRNA_L-elsbetiae_contig11731.1508.1 ID=mRNA_L-elsbetiae_contig11731.1508.1|Name=mRNA_L-elsbetiae_contig11731.1508.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3498bp|location=Sequence derived from alignment at L-elsbetiae_contig11731:116..4900+ (Laminarionema elsbetiae ELsaHSoW15)back to top |