mRNA_L-elsbetiae_contig6394.15062.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6394.15062.1
Unique NamemRNA_L-elsbetiae_contig6394.15062.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6394.15062.1 vs. uniprot
Match: A0A6H5KFP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP0_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 4.590e-49
Identity = 99/124 (79.84%), Postives = 105/124 (84.68%), Query Frame = 2 
Query:  257 MEAIESLAGMVSSMLDFPLVEFLGSLVPAGGSEAGQQVATAFGAGLDNLGSLCSQAGLDRWELLGLAVLSAITVYRKELSSNSVYNGKGAGDSGGRGGRRYHQTDG-GRDALVVHVDGCHVAVA 625
            MEAIE L GMV+S+L+FPLV FLG LVP GGSEAGQQVATA G GLDNLGSLCSQAGLDRWELLGLAVLSAITVYRKELSSNSVY   GAG     GGRRYH+T G G  A+VVHVDGCHVA+A
Sbjct:    1 MEAIELLGGMVNSVLEFPLVGFLGRLVPVGGSEAGQQVATAVGVGLDNLGSLCSQAGLDRWELLGLAVLSAITVYRKELSSNSVYGKGGAG----AGGRRYHRTGGDGGSAVVVHVDGCHVAMA 120
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BLAST of mRNA_L-elsbetiae_contig6394.15062.1 vs. uniprot
Match: D7FI18_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI18_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 3.320e-41
Identity = 87/126 (69.05%), Postives = 91/126 (72.22%), Query Frame = 2 
Query:  257 MEAIESLAGMVSSMLDFPLVEFLGSLVPAGGSEAGQQVATAFGAGLDNLGSLCSQAGLDRWELLGLAVLSAITVYRKELSSNSVYNGKGAGDSGGRGGRRYHQTDGGRDALV---VHVDGCHVAVA 625
            MEAIE L GMV+S+L+FPLV FLG LVP GGSEAGQQVATA   GLDNLGSLCSQAGLDRWELLGLAVLSAITVYRKELSSNSVY GKG                          VHVDGCHVA+A
Sbjct:    1 MEAIELLGGMVNSVLEFPLVGFLGRLVPVGGSEAGQQVATAVAVGLDNLGSLCSQAGLDRWELLGLAVLSAITVYRKELSSNSVY-GKGXXXXXXXXXXXXXXXXXXXXXXXXXXVHVDGCHVAMA 125
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6394.15062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KFP0_9PHAE4.590e-4979.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI18_ECTSI3.320e-4169.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6394contigL-elsbetiae_contig6394:7791..10332 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_000690.1
Exons2
Model size649
Cds size393
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6394.15062.1prot_L-elsbetiae_contig6394.15062.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6394 7791..10076 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816705.567161-CDS-L-elsbetiae_contig6394:7790..80721622816705.567161-CDS-L-elsbetiae_contig6394:7790..8072Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6394 7791..8072 -
1691683753.7254376-CDS-L-elsbetiae_contig6394:7790..80721691683753.7254376-CDS-L-elsbetiae_contig6394:7790..8072Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6394 7791..8072 -
1622816705.5785553-CDS-L-elsbetiae_contig6394:9965..100761622816705.5785553-CDS-L-elsbetiae_contig6394:9965..10076Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6394 9966..10076 -
1691683753.7368112-CDS-L-elsbetiae_contig6394:9965..100761691683753.7368112-CDS-L-elsbetiae_contig6394:9965..10076Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6394 9966..10076 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816705.5891473-UTR-L-elsbetiae_contig6394:10076..103321622816705.5891473-UTR-L-elsbetiae_contig6394:10076..10332Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6394 10077..10332 -
1691683753.7478635-UTR-L-elsbetiae_contig6394:10076..103321691683753.7478635-UTR-L-elsbetiae_contig6394:10076..10332Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6394 10077..10332 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6394.15062.1

>prot_L-elsbetiae_contig6394.15062.1 ID=prot_L-elsbetiae_contig6394.15062.1|Name=mRNA_L-elsbetiae_contig6394.15062.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=131bp
MEAIESLAGMVSSMLDFPLVEFLGSLVPAGGSEAGQQVATAFGAGLDNLG
SLCSQAGLDRWELLGLAVLSAITVYRKELSSNSVYNGKGAGDSGGRGGRR
YHQTDGGRDALVVHVDGCHVAVAAAAAAAAA
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mRNA from alignment at L-elsbetiae_contig6394:7791..10332-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6394.15062.1 ID=mRNA_L-elsbetiae_contig6394.15062.1|Name=mRNA_L-elsbetiae_contig6394.15062.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2542bp|location=Sequence derived from alignment at L-elsbetiae_contig6394:7791..10332- (Laminarionema elsbetiae ELsaHSoW15)
GGCCCACCTTCGCTTCACTGTTTTTGGGTTGTTCAGCCATCCCCGGTGGC
CCACGACTCGCGATCCAACGGGGTTCACGCTTACCACCTGTGATATCCTC
TCACGAACAAGACCGCAAGGGCTGTCTCCGCTATAGACATAGACTCACTC
ACGGCAATCGCAGCTGTTCTCGTGACGTTGTCCGGCGTATTTTTCGACAC
AGAGAGAGAGACGGACGCGCACACGGGACGCGCATCACGACTAGGGAGCG
ACAGCAATGGAAGCCATCGAGTCGCTCGCGGGGATGGTTAGCAGCATGCT
CGACTTCCCGCTGGTTGAATTTCTAGGGAGTCTGGTTCCTGCAGGCGGAA
GCGAAGCCGGGCAGCAGGTGAGTCTTCTTGTGTGGTGTTTTTCAGTCGAT
GATGATTCCTGCGCACCACCCTGGCCAGGAACTTGCTCAATCTCTGGCTC
AGAGGGGCTTGCCACGCAGACCGAAAGTTGAAGTTCCCGTTGCTGCAGGA
ACACGCAGGGTGGTGGTCATCTGTAGCGCAGGCCTTGTGGTGGCCAGGAT
CGGGGCGATGGCATAATCCTGGGCTTGATCTGATCTCTCACATGGTGGTA
TTTTGGCAACACTGTTGTTGCTGCTGCCTGAACGCCCAGGTTCAAACACC
CGCTAAAAAAACTAAATTTCACTTTTACACAAAGCTGTATAATAGAAGCA
AGAGAGAAAAGCCGAGTTGCGAGGCGTTTCACGAGGTCCTGCATGCGCTA
CGCATTGCCACACCTCCAGTCGCGGTTGAATCGTCTAAAAGCGAGATGAT
ATGTGTTTAGATATGTATGTATCTGTGCAGCATAGATAGATACACACGTA
GACTGGAAAATGCACACAAGTTGGCCCGCCAGCAGCGGGAAACGCCTTGT
GACGCTGGTTGAAACTTCAACAGCCTCTTTTAAACTTAGTCAATCTGTAG
TTGTTGTCTTCACCCACTACCTCCATCTGTCTGTACCAACCCAGCACTGG
ATACTGTCGATTCCCGTGATCACGGGCTAACTGGCCCCGAGAAGGGAGGG
TATACTGACAATTTTAAATGGATCCGAAGGGTCAGAAAGCAAAAAACAAA
ATTTCAGACAGTCAGGACATGCCCCTCTCTACCTTTTGACCCCCCCTACT
TTGACACAGTGATGCTTGAGGCAGTGCTGCTTGGTGTAGAAAAAAAAAAT
AGCTGGCAAACTTTTGTGAGGGGCAACCTCTTTGCCTCTGCGTGATTTTC
AACGATGACGAGAACGCGTCGCAGACAGAACCTACTGTAGCACCGAAAGT
GGCGCGTCGAAATACACGCAGCGGCAGTCAGGAGGGACGTTTTTCTCATA
AAAGTCGCCTTCGCGCGGCGGCTTAGGCTTAGCTTCCCCCTCAACGGTTT
AGGTAGGGTGCACTGGTATATCAAAGCAGGTGATATGAGGGTCGTTCAGC
ACGTGGAATTTTGCTGCAACACGCAGTATAGGCCGAGAGCTCGTGATCGG
CGCAAAGCAATATTTGACTTCACAGCATTTTCCGCCGGATCTTTTTTTTG
TATCGAAAGAAGAGGGCATACGATATCCGCGCAAATCCAAAACTTGCTTC
GCGCCGATTGCGAGTTCTCGGCCTATACTGCGTGTTGCAGCAAAGTTCGA
ACTGCTAAGAAACCCTCACAATACACTCTTCAACATATAATATCGGCGGG
GGGTTGTGCCGCACTTTCTTTGCCAGCTATCTGCGGCATAACTGCGAAAG
TTTGTTTCGTCGGGTTTGAGGGCAATAGGGGGAGGAACTTGACAAATCGG
GGTTCATTAGACAGGAAAGACAGAACTCTACGGCCGCAGCGCCTTAGATC
TGTAAATAGTTTCGTCGCCGGACCGCACAGTAGCTGAGAGGGTGTTTCCG
ACTGGCGCCCCCTTAAACCGGCGTGCAGCTCTGCAGGTAAAAAATAAAAA
ACAACCTGGAAAAAGTCAGTATGTCAGTATCACCAACCGGGGGGATACAC
CCCCTGATCCCTGATTCTACCTTGGCTTGGTACCCGAAAATGCCGGGTTG
TTCCGTGCCGGGCTCCGCCGGTAGGGCCAGCAAATGTAGTCCTCCCCGCC
GATAATCATACCGCACACAGGATACACACAACGTTCGGACTCCCGGCCTC
CTTCTTGCGGCATTTGCCCTTCGTTTTTTCCGGCCTTGAACTCACACGCA
TGCATATGTTTACATGATACACCGCCACACTTCCTTCGTCGGCTGCCGCC
GCCGAAAAAGGTCGCCACCGCGTTCGGCGCCGGCCTCGACAACTTGGGCT
CCCTCTGCTCCCAGGCCGGGCTGGACCGATGGGAGCTCCTGGGCCTCGCG
GTGCTGTCCGCGATCACGGTGTACCGGAAGGAGCTCTCCTCCAACAGCGT
CTACAACGGCAAAGGGGCCGGCGACAGCGGCGGCCGCGGCGGCAGACGGT
ACCACCAAACAGACGGTGGCCGCGACGCGCTCGTGGTGCACGTGGATGGC
TGCCACGTAGCAGTGGCGGCAGCGGCGGCGGCCGCCGCCGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6394:7791..10332-

>mRNA_L-elsbetiae_contig6394.15062.1 ID=mRNA_L-elsbetiae_contig6394.15062.1|Name=mRNA_L-elsbetiae_contig6394.15062.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=786bp|location=Sequence derived from alignment at L-elsbetiae_contig6394:7791..10332- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAAGCCATCGAGTCGCTCGCGGGGATGGTTAGCAGCATGCTCGACTT
CCCGCTGGTTGAATTTCTAGGGAGTCTGGTTCCTGCAGGCGGAAGCGAAG
CCGGGCAGCAGATGGAAGCCATCGAGTCGCTCGCGGGGATGGTTAGCAGC
ATGCTCGACTTCCCGCTGGTTGAATTTCTAGGGAGTCTGGTTCCTGCAGG
CGGAAGCGAAGCCGGGCAGCAGGTCGCCACCGCGTTCGGCGCCGGCCTCG
ACAACTTGGGCTCCCTCTGCTCCCAGGCCGGGCTGGACCGATGGGAGCTC
CTGGGCCTCGCGGTGCTGTCCGCGATCACGGTGTACCGGAAGGAGCTCTC
CTCCAACAGCGTCTACAACGGCAAAGGGGCCGGCGACAGCGGCGGCCGCG
GCGGCAGACGGTACCACCAAACAGACGGTGGCCGCGACGCGCTCGTGGTG
CACGTGGATGGCTGCCACGTAGCAGTGGCGGCAGCGGCGGCGGCCGCCGC
CGCCGTCGCCACCGCGTTCGGCGCCGGCCTCGACAACTTGGGCTCCCTCT
GCTCCCAGGCCGGGCTGGACCGATGGGAGCTCCTGGGCCTCGCGGTGCTG
TCCGCGATCACGGTGTACCGGAAGGAGCTCTCCTCCAACAGCGTCTACAA
CGGCAAAGGGGCCGGCGACAGCGGCGGCCGCGGCGGCAGACGGTACCACC
AAACAGACGGTGGCCGCGACGCGCTCGTGGTGCACGTGGATGGCTGCCAC
GTAGCAGTGGCGGCAGCGGCGGCGGCCGCCGCCGCC
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