prot_L-elsbetiae_contig6345.15003.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig6345.15003.1
Unique Nameprot_L-elsbetiae_contig6345.15003.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length228
Homology
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BLAST of mRNA_L-elsbetiae_contig6345.15003.1 vs. uniprot
Match: D7G3N4_ECTSI (Rhomboid domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3N4_ECTSI)

HSP 1 Score: 257 bits (657), Expect = 2.150e-78
Identity = 140/190 (73.68%), Postives = 150/190 (78.95%), Query Frame = 0 
Query:    1 CLTVAFSSLFSWGSAVGEVMALVVGFNALQALKCCCCPDSVPAEHKFCVNLLKAYGALSGILLVSDLASFGAILGQSCFVAWSGVSETSRELGLLLLVAAAAVHGLAVAACVEGVVIFRDGQVFLSSIGLKQVVSAYSLNADAEMMMTATSGPATAXXXXXXXXXXXXASAAGITSGRLYRGGGRALGTA 190
            CLTVA S +FSWGS VGEVMALVVGFNALQALKCCCCPDSVPAEH+FCVNLLKAYGALS ILLVSDL SFGAILGQSCFV WSGVS+TSR  GL LL+ AAAVHGLAVAAC+EG VIFRDGQ FLS+IGLKQVV+AYS  A+        SG  T              +AA ITSGRLYRGGGR+ GTA
Sbjct:  453 CLTVALSMVFSWGSTVGEVMALVVGFNALQALKCCCCPDSVPAEHRFCVNLLKAYGALSAILLVSDLLSFGAILGQSCFVTWSGVSDTSRHYGLALLLVAAAVHGLAVAACIEGGVIFRDGQTFLSTIGLKQVVTAYSFGAN--------SGGNT--------------TAAAITSGRLYRGGGRSTGTA 620
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6345.15003.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3N4_ECTSI2.150e-7873.68Rhomboid domain-containing protein n=2 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..54
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 83..93
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 119..228
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 55..82
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 94..118
NoneNo IPR availableTMHMMTMhelixcoord: 4..26
NoneNo IPR availableTMHMMTMhelixcoord: 96..118
NoneNo IPR availableTMHMMTMhelixcoord: 54..76

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6345contigL-elsbetiae_contig6345:7650..11125 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6345.15003.1mRNA_L-elsbetiae_contig6345.15003.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig6345 7650..11125 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig6345.15003.1 ID=prot_L-elsbetiae_contig6345.15003.1|Name=mRNA_L-elsbetiae_contig6345.15003.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=228bp
CLTVAFSSLFSWGSAVGEVMALVVGFNALQALKCCCCPDSVPAEHKFCVN
LLKAYGALSGILLVSDLASFGAILGQSCFVAWSGVSETSRELGLLLLVAA
AAVHGLAVAACVEGVVIFRDGQVFLSSIGLKQVVSAYSLNADAEMMMTAT
SGPATAAGGGSAASTNSYASAAGITSGRLYRGGGRALGTAASNRAAASSR
GGGGARTAGRGAEAGALLLGRGGGGEGG
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