mRNA_L-elsbetiae_contig634.14992.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig634.14992.1
Unique NamemRNA_L-elsbetiae_contig634.14992.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig634.14992.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig634contigL-elsbetiae_contig634:7778..12152 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size418
Cds size417
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig634.14992.1prot_L-elsbetiae_contig634.14992.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig634 7778..12152 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816699.438257-CDS-L-elsbetiae_contig634:7777..78301622816699.438257-CDS-L-elsbetiae_contig634:7777..7830Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig634 7778..7830 +
1691683749.2880898-CDS-L-elsbetiae_contig634:7777..78301691683749.2880898-CDS-L-elsbetiae_contig634:7777..7830Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig634 7778..7830 +
1622816699.4515283-CDS-L-elsbetiae_contig634:8463..85351622816699.4515283-CDS-L-elsbetiae_contig634:8463..8535Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig634 8464..8535 +
1691683749.2982068-CDS-L-elsbetiae_contig634:8463..85351691683749.2982068-CDS-L-elsbetiae_contig634:8463..8535Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig634 8464..8535 +
1622816699.4653316-CDS-L-elsbetiae_contig634:9288..93601622816699.4653316-CDS-L-elsbetiae_contig634:9288..9360Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig634 9289..9360 +
1691683749.3087766-CDS-L-elsbetiae_contig634:9288..93601691683749.3087766-CDS-L-elsbetiae_contig634:9288..9360Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig634 9289..9360 +
1622816699.479972-CDS-L-elsbetiae_contig634:9951..100231622816699.479972-CDS-L-elsbetiae_contig634:9951..10023Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig634 9952..10023 +
1691683749.3189476-CDS-L-elsbetiae_contig634:9951..100231691683749.3189476-CDS-L-elsbetiae_contig634:9951..10023Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig634 9952..10023 +
1622816699.4973745-CDS-L-elsbetiae_contig634:11081..111531622816699.4973745-CDS-L-elsbetiae_contig634:11081..11153Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig634 11082..11153 +
1691683749.3298595-CDS-L-elsbetiae_contig634:11081..111531691683749.3298595-CDS-L-elsbetiae_contig634:11081..11153Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig634 11082..11153 +
1622816699.5150278-CDS-L-elsbetiae_contig634:12076..121521622816699.5150278-CDS-L-elsbetiae_contig634:12076..12152Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig634 12077..12152 +
1691683749.345608-CDS-L-elsbetiae_contig634:12076..121521691683749.345608-CDS-L-elsbetiae_contig634:12076..12152Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig634 12077..12152 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig634.14992.1

>prot_L-elsbetiae_contig634.14992.1 ID=prot_L-elsbetiae_contig634.14992.1|Name=mRNA_L-elsbetiae_contig634.14992.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=139bp
LTTLPARVLDHLPRLKTLDFQYNKLRMVPDGIFDSVTLLKTLILGSNSLT
TLPVGVFDRLTSLHTLDLSFNELATMPEEIFHHLTSLQHLDLRGNSIKEL
PEGIFSSLTSLKTLDLRWNDLSELPAGIFHSLTSLETL*
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mRNA from alignment at L-elsbetiae_contig634:7778..12152+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig634.14992.1 ID=mRNA_L-elsbetiae_contig634.14992.1|Name=mRNA_L-elsbetiae_contig634.14992.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4375bp|location=Sequence derived from alignment at L-elsbetiae_contig634:7778..12152+ (Laminarionema elsbetiae ELsaHSoW15)
CTGACGACGCTGCCTGCCAGGGTGCTCGATCATCTACCCCGGCTGAAAAC
GCTGTAAGTTCACTTCGTTTGCGACCCCTGTGCAAAACGTTTCGGGAAGA
ACAGATGGTGTGGATATCGCACCACCCCATTATGCTGGACTTCGGAAGCA
CGATAAGCAAGGTCTCCCCGCATTTTGTTCCCTCTTACTCGCCAAACAGC
TAATCTACCGGTTGTAGATGTGATATGCACGGTGGTGGTCGACGGCACAC
ACAGAACGTTTCACCTAGCATTAGCTCATCTGGGATTGAGCCATTTAGGT
CGATCGACGTTGACATCTACATACAGTACCATGCTGGAACGGAACTTCCA
TACATAGTGCCTTTTCCCTCGTCACATGGTTTGGAAAACCCGTTGCTAAT
TGAAAGGACCTGGGGCGCCTGTGAGGTTGGCTTGGGACAGAGGGTTAGAG
AGTGGGGGTATTACCAGCTGCCAAGGTGGCTACGGCATTCCACAGAAAAG
GCGTTGGTGCTCCCACAGCCAAATAATGTACATAGTTTGGATTATTCCGT
CAATGCTTTCGAACCTTGGGCTATACTTTGTATATGTATCACCAATCATT
TGGCTCGCATGCCTGTTAAACATGGCTCACACCTCCCTCCTCTGTCACCC
TTGCTCTGTGTGATTCGTTGCCCGACAACCCCGCAGCGACTTTCAGTACA
ACAAGCTGAGGATGGTGCCTGACGGGATCTTCGACAGTGTTACCTTGTTG
AAAACGCTGTGAGTCCACCCTTCGATCTTGCTGTTTTAACTCTCCTGCGT
GTGAGATGGAAATCTGGCACGAATACGTTCCGCTACACTTCGGAGTCGTG
ATGAGACAAATTGTCTCGTCTCCTGGCATACGCCGAACAGCCGATCTGTG
ACGTTTGGATATTGCTTTAGGATATGACGGACGGTGGCACACACAGATCA
TTGTGGCCGGCCTACATTCCTCTCGGACCGAGTTACTTTGATCGATCGAA
TCTTGACACAACGATTTATTCGATAGAACTCAGTGCCCGATCGCGAATAG
CTTGGAGTATTCTCAGAGATATTATGATCAGCTGAAGGGTGTTCAGACTG
AAGGCGTCGCGTGTTTGGATCATCCTTTGTTTTTCTGGGGTCATCGATTC
GGGATTACACCCGTACATCACATGACGCACCACTACGGTCTGAGAACGGA
TGCGCAACACCCCTGGCGGTTAGGGTCACGATTCGCTCGGAATCGTGACG
AAGTAGCCAACTCCCTCGCCTCAGCCCAAGGAACGTACTCTTTGAGCTGG
TACCGTGCCCTGCGTGTCTCTGTTCAATTTGTTTAAGCTACGGGCGGATC
AAAACAAGTCGTTGCTCTAGCTTCCATGACGTTTTTCCACCGCATTGCCT
GTTCACACTGGGGCTAAGCAGACTAGCCCGCCAGAATACCCCTCCAAACG
TGGCGTGTTCTTGACTATCACCCGTTGTCTGGTCTGTGTTGTTTACCCCA
ATAATCCACAGTATACTTGGGAGCAACTCCCTAACGACGCTTCCTGTGGG
GGTCTTCGACCGTCTCACCTCACTGCACACGCTGTGAGTCCACCTCTTTG
ATTCCCGCGCAGCTACCGTGGAGGGAATATATAGTTGGAGCATTGATTGC
ACGATTGAGTACCGCTAGGGCTATGAGCAAGGTTGCTCGGTCTAGTTTGC
TCTCATTCGCCCAATATTTGGCCACCTGTAACTATTAGAGAATGTCAGCA
CGATCAAAGACAGTGATTCGTGCTGGACTCTTTGATTTATTGCAACGTTT
ATTCGGGGTTGAGTTGTATCTCTCCATATTTTAGGCGTGCGGCGGCGTGG
GTGAATGGCCGGCACGTATTCTGAGTGTGATCAGGTTCCGCTCGGAATCG
TTGCGAATTACCCAATCCCGTCTACCTAGCTGCTCACGAGATATTGTGCA
ACGACTGTTACCGTGCCCTCGGTACTCCATGAGTCGGGGTTCAAGTTGAA
GAATGCTAAAAATAAACTGCTTGCTCTAACTTGCTTAAATTTGTCAACGC
ACCTTCAAAGTTTGAGCTATTGATCGAGACTCGCGGGCTCGCATGCCCTT
CCAAACGTGGGCGACACCTTCTCTTCTATCAACCTTGCTCCCCATGTTTG
GCTTCGTCGGTGGAACCTCCACAGTGACCTGAGCTTCAACGAACTGGCGA
CGATGCCAGAAGAAATTTTCCATCATCTTACCTCGCTGCAACACCTGTGA
GTTCATCTCTTCGATTCTGTTTGAAACTATCATATCGGGAAAGGGATGAC
TGCCACAATGCATCAATGAGTTCACCGCCAGAGTTATGAATCGCGGTGAG
TCAGGGTGCTTATTTCTCGTTTCTCGTTTCCCTCCCATTACTCGCCGAGC
AACTAATCTGCGACATTTTGGAGACTGTGAAGGGTGATGGGCGCCAACAC
GCATAGAATATGTTTCTAGCCCACAGTAGGTTACATACATTCCCCTCCAT
TCCAGTCATTTTGATCGATCGGCTCCCGAAGCCATGTACAATAGCCGATG
GAATCTTTACTCGGGATGCCTCGTCAAGTGGTTGGGAAATTGTCTGTATG
TACATGTGCATCGGAAGGACTTGGTGCGTCTGCGAGTTCGGCTCGACGCC
AATGTGACGGGCGAACGATTGGTTCCTTCGCCTCCAAGCATGCGGTATTT
CTCCGGGGCCCTTCTTGTGTTGCATGTACAATACCCCTTCGATACGATAT
TCACCTAGCTGGGTGGAGTTATCGTCGAGGATCTCTCATCCCAGCAAATG
CCAGCTTATTATGACTTGCCGGCCACGGCGTGAGCAGGATTGCGGATATG
GGGGGGATACTTTGATCAGTTGATTGGTAACGACCGAACACAGTGAGTCT
CGTTGGTTCATACCATCGCTGATTCAGAGCCTAACTATTTAGCCCTCCAT
CTGTCGAGACGTAACGTGGCGCCAGCAAATGACAGGTCGCCCCGCCAAAT
GTCGCCAGATCGCTTGCGGATTCGTTATGAGTCGACCAACTCTGTCACCT
CATCTGAAGACGAAGCGTGCTTAAACATATGTACATACCGACGTAGTACC
GCGCCTGCCTGCAGTACTCCATTAAAACATTGGTGGAGCTGCAGGCTCAT
CAAAACTGAGGCTTTACCCGATTTTGGCATGGTCCTATCATCGAACCCTG
GGCTATCGAAGCTAGCCGGCTTCAAAGTGCGTTTGCAGAAGTAGGTGGCT
CCTTCTCTATCATCACACCCTTGTTCGGCATATGTCGCTCGTGCAACTTT
GCAGTGATCTCCGGGGCAACAGCATCAAGGAGCTGCCTGAAGGGATATTC
AGCTCCCTCACCTCGCTGAAGACGCTGTGAGTCGGTCCACCATTCCCTTC
ATTCCTGTACAACTAATCTATGTATCCATGTGTATGCTGGAAGAAAAAAC
AGTTTGGGAACAGCTTGAGAACGTCGCGCCAACAGTGCGTAAATTTACCG
CCTAACTTTGCTAAAATATACATATAAAACTTTGACGAACCTGCCTCGAT
TTCCGTCTTTTTCCATTCGCCACACAGGATATGCAAGGTGCTGAGCCGCA
GCACGCATAGAATGTTCTATACATTCAGCGCACGTTCATCTAGACTTAGG
CCATTTTGCTACATGTGGACTACTGTTGTTGTACAGAAACTACGCACCGT
CGTGGATCGCAAACACTTTTCCTTGGGCATGGTCAATCATGTTGTAGATC
TGAAGGGTGTAGTGCGTCTGTGAGTTCGGTATGACAGCCACAACCGTTCG
TCCACATTTGCCTCCGAGCCTGCGGCACTTGGGCTGTCTCCGTTGCTCTT
CTGTTGCACAACCGTTCGATACGGTGTAGCTGAGTGCAGTCATCTCCGCT
CCCGGAAACCGTCAGCCTGTGACTTCACCACCACGGCGCCGGCGGGGTTG
CGGCTAGCCTCAGTATCTGGGAGATGTTCTGATTGTGCTCAGGATGCTCG
TAAAATCGCTAAGACGTCGCCCAATTTTGTTAAAAGGGGAGCGGGCTGTT
GATAGTTGCCGTGCCTGCGATACAATACTTGCCAGAATTGTGTTGAGACC
ACAAGTTGGTCAACCTATCGCGCTGCATTGATTTTGCATGATTCGGTCGC
CGCGTTCAAGCTATGCATATCTACATACGCTCTGGCGACCCAAGCGAGCT
GACCCGCCGCTTTAAATGTGGTACAATAAGCGTCATACTTCAAAGTATTA
TCTCTGTCACCCTTTCTCGACGTGTACCGCCCCCCCGACAACTTCATAGT
GATCTGAGGTGGAACGACCTGTCGGAGCTGCCTGCCGGGATATTCCATTC
TCTCACCTCGCTGGAAACGCTGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig634:7778..12152+

>mRNA_L-elsbetiae_contig634.14992.1 ID=mRNA_L-elsbetiae_contig634.14992.1|Name=mRNA_L-elsbetiae_contig634.14992.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=834bp|location=Sequence derived from alignment at L-elsbetiae_contig634:7778..12152+ (Laminarionema elsbetiae ELsaHSoW15)
CTGACGACGCTGCCTGCCAGGGTGCTCGATCATCTACCCCGGCTGAAAAC
GCTCTGACGACGCTGCCTGCCAGGGTGCTCGATCATCTACCCCGGCTGAA
AACGCTCGACTTTCAGTACAACAAGCTGAGGATGGTGCCTGACGGGATCT
TCGACAGTGTTACCTTGTTGAAAACGCTCGACTTTCAGTACAACAAGCTG
AGGATGGTGCCTGACGGGATCTTCGACAGTGTTACCTTGTTGAAAACGCT
TATACTTGGGAGCAACTCCCTAACGACGCTTCCTGTGGGGGTCTTCGACC
GTCTCACCTCACTGCACACGCTTATACTTGGGAGCAACTCCCTAACGACG
CTTCCTGTGGGGGTCTTCGACCGTCTCACCTCACTGCACACGCTTGACCT
GAGCTTCAACGAACTGGCGACGATGCCAGAAGAAATTTTCCATCATCTTA
CCTCGCTGCAACACCTTGACCTGAGCTTCAACGAACTGGCGACGATGCCA
GAAGAAATTTTCCATCATCTTACCTCGCTGCAACACCTTGATCTCCGGGG
CAACAGCATCAAGGAGCTGCCTGAAGGGATATTCAGCTCCCTCACCTCGC
TGAAGACGCTTGATCTCCGGGGCAACAGCATCAAGGAGCTGCCTGAAGGG
ATATTCAGCTCCCTCACCTCGCTGAAGACGCTTGATCTGAGGTGGAACGA
CCTGTCGGAGCTGCCTGCCGGGATATTCCATTCTCTCACCTCGCTGGAAA
CGCTGTGATGATCTGAGGTGGAACGACCTGTCGGAGCTGCCTGCCGGGAT
ATTCCATTCTCTCACCTCGCTGGAAACGCTGTGA
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