mRNA_L-elsbetiae_contig6334.14986.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig6334.14986.1 vs. uniprot
Match: D8LDE8_ECTSI (RNA pseudouridylate synthase domain-containing protein (C-terminal) RNA pseudouridylate synthase dom n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDE8_ECTSI) HSP 1 Score: 169 bits (428), Expect = 3.560e-45 Identity = 82/93 (88.17%), Postives = 84/93 (90.32%), Query Frame = 3 Query: 651 PVGRLDYNAEGLLLLTNDGDLAPLMELSSTGIVRTYSARVYGNITEEKLRGMRSGCTIDGVRYKDMLVRVEGGGGKGREGRSAWLTIECTEGK 929 PVGRLDYN EGLLLLTNDGDLA MEL S+ IVRTYS RVYGNITEEKLR MRSGCTIDGVRYK M VRVEGGGGKGREGR+AWLTIECTEGK Sbjct: 231 PVGRLDYNTEGLLLLTNDGDLARKMELPSSNIVRTYSVRVYGNITEEKLRAMRSGCTIDGVRYKGMFVRVEGGGGKGREGRNAWLTIECTEGK 323
BLAST of mRNA_L-elsbetiae_contig6334.14986.1 vs. uniprot
Match: A0A7G9S8P3_9SPHN (Pseudouridine synthase n=1 Tax=Sphingomonas rhizophila TaxID=2071607 RepID=A0A7G9S8P3_9SPHN) HSP 1 Score: 105 bits (263), Expect = 4.880e-23 Identity = 52/93 (55.91%), Postives = 64/93 (68.82%), Query Frame = 3 Query: 651 PVGRLDYNAEGLLLLTNDGDLAPLMELSSTGIVRTYSARVYGNITEEKLRGMRSGCTIDGVRYKDMLVRVEGGGGKGREGRSAWLTIECTEGK 929 PVGRLDYN EGLLLLTNDG+L +EL STG+VRTY AR +G+IT+E L + G TIDGVRY + +E R GR+ W+ + TEGK Sbjct: 143 PVGRLDYNTEGLLLLTNDGELKRQLELPSTGVVRTYRARAFGDITQEALEDLAEGITIDGVRYGSIDANLER-----RTGRNCWIELSLTEGK 230
BLAST of mRNA_L-elsbetiae_contig6334.14986.1 vs. uniprot
Match: UPI001FF6E40F (rRNA pseudouridine synthase n=1 Tax=Erythrobacter sp. F6033 TaxID=2926401 RepID=UPI001FF6E40F) HSP 1 Score: 104 bits (259), Expect = 1.250e-22 Identity = 52/93 (55.91%), Postives = 62/93 (66.67%), Query Frame = 3 Query: 651 PVGRLDYNAEGLLLLTNDGDLAPLMELSSTGIVRTYSARVYGNITEEKLRGMRSGCTIDGVRYKDMLVRVEGGGGKGREGRSAWLTIECTEGK 929 PVGRLD N EGLLLLTNDG L MEL STGI RTY AR +G I++E+L G+ G IDGVRY + +E G GK R+ W+ + TEGK Sbjct: 115 PVGRLDLNTEGLLLLTNDGGLKRQMELPSTGIPRTYRARAFGEISQEELEGLIEGIEIDGVRYGSIDANIERGSGKSSGTRNQWIEMTITEGK 207
BLAST of mRNA_L-elsbetiae_contig6334.14986.1 vs. uniprot
Match: A0A6M8VMQ7_9PROT (Pseudouridine synthase n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A6M8VMQ7_9PROT) HSP 1 Score: 100 bits (250), Expect = 2.290e-21 Identity = 52/100 (52.00%), Postives = 64/100 (64.00%), Query Frame = 3 Query: 636 ARFDR--PVGRLDYNAEGLLLLTNDGDLAPLMELSSTGIVRTYSARVYGNITEEKLRGMRSGCTIDGVRYKDMLVRVEGGGGKGREGRSAWLTIECTEGK 929 A F R VGRLD EGLLLLTNDGDLA MEL TG R Y R YG++ EEKL+G+R G T+DGV YK + +E +G ++WL++ TEGK Sbjct: 109 AEFPRVVTVGRLDLTTEGLLLLTNDGDLARYMELPETGWARRYRVRAYGHVDEEKLKGLRRGLTVDGVTYKSIRAELEK-----TQGSNSWLSVTLTEGK 203
BLAST of mRNA_L-elsbetiae_contig6334.14986.1 vs. uniprot
Match: UPI001F451C1D (rRNA pseudouridine synthase n=1 Tax=Erythrobacter sp. SDW2 TaxID=2907154 RepID=UPI001F451C1D) HSP 1 Score: 100 bits (250), Expect = 2.670e-21 Identity = 49/93 (52.69%), Postives = 63/93 (67.74%), Query Frame = 3 Query: 651 PVGRLDYNAEGLLLLTNDGDLAPLMELSSTGIVRTYSARVYGNITEEKLRGMRSGCTIDGVRYKDMLVRVEGGGGKGREGRSAWLTIECTEGK 929 P+GRLDYN EGLLLLTNDG+L MEL S+G+ RTY AR +G +T+E+L + G TIDGVRY + +E R GR+ W+ + TEGK Sbjct: 128 PIGRLDYNTEGLLLLTNDGELKRRMELPSSGVPRTYRARAFGEVTQEQLESLIEGITIDGVRYGRIDANMER-----RTGRNQWIELTITEGK 215
BLAST of mRNA_L-elsbetiae_contig6334.14986.1 vs. uniprot
Match: A0A109LT19_9SPHN (Pseudouridine synthase n=1 Tax=Erythrobacter sp. YT30 TaxID=1735012 RepID=A0A109LT19_9SPHN) HSP 1 Score: 100 bits (249), Expect = 3.050e-21 Identity = 50/93 (53.76%), Postives = 64/93 (68.82%), Query Frame = 3 Query: 651 PVGRLDYNAEGLLLLTNDGDLAPLMELSSTGIVRTYSARVYGNITEEKLRGMRSGCTIDGVRYKDMLVRVEGGGGKGREGRSAWLTIECTEGK 929 PVGRLD N EGLLLLTNDG L MEL +TGI RTY AR +G++++E+L + G TIDGVRY + +E GGG G+ + W+ + TEGK Sbjct: 115 PVGRLDLNTEGLLLLTNDGGLKRQMELPATGIPRTYRARAFGDVSQEQLEDLIEGVTIDGVRYGSIDANLERGGGSGK---NQWIEMTITEGK 204
BLAST of mRNA_L-elsbetiae_contig6334.14986.1 vs. uniprot
Match: A0A6J4S8P0_9SPHN (Pseudouridine synthase n=1 Tax=uncultured Sphingomonas sp. TaxID=158754 RepID=A0A6J4S8P0_9SPHN) HSP 1 Score: 99.4 bits (246), Expect = 6.560e-21 Identity = 48/93 (51.61%), Postives = 63/93 (67.74%), Query Frame = 3 Query: 651 PVGRLDYNAEGLLLLTNDGDLAPLMELSSTGIVRTYSARVYGNITEEKLRGMRSGCTIDGVRYKDMLVRVEGGGGKGREGRSAWLTIECTEGK 929 PVGRLDY EGLLLLTNDG+L +EL STG+VRTY AR +G +++++L + G TIDGVRY + +E R GR+ W+ + TEGK Sbjct: 109 PVGRLDYMTEGLLLLTNDGELKRQLELPSTGVVRTYRARAFGAVSQDQLEDLAEGVTIDGVRYGSINANMER-----RTGRNCWIEMSLTEGK 196
BLAST of mRNA_L-elsbetiae_contig6334.14986.1 vs. uniprot
Match: UPI00201D9BD6 (rRNA pseudouridine synthase n=1 Tax=Sphingomonas sp. RB56-2 TaxID=2908206 RepID=UPI00201D9BD6) HSP 1 Score: 99.8 bits (247), Expect = 7.690e-21 Identity = 47/93 (50.54%), Postives = 63/93 (67.74%), Query Frame = 3 Query: 651 PVGRLDYNAEGLLLLTNDGDLAPLMELSSTGIVRTYSARVYGNITEEKLRGMRSGCTIDGVRYKDMLVRVEGGGGKGREGRSAWLTIECTEGK 929 PVGRLDYN EGLLLLTNDG+L +EL STG+VR Y AR +G++T+ +L + G TI+G+RY + +E R GR+ W+ + TEGK Sbjct: 134 PVGRLDYNTEGLLLLTNDGELKRQLELPSTGVVRRYRARAFGDVTQAQLEDLSEGVTIEGIRYGSIDANLER-----RTGRNCWIELSLTEGK 221
BLAST of mRNA_L-elsbetiae_contig6334.14986.1 vs. uniprot
Match: A0A651F3U7_9PROT (Pseudouridine synthase n=1 Tax=Micavibrio sp. TaxID=2024841 RepID=A0A651F3U7_9PROT) HSP 1 Score: 99.0 bits (245), Expect = 8.740e-21 Identity = 47/92 (51.09%), Postives = 63/92 (68.48%), Query Frame = 3 Query: 654 VGRLDYNAEGLLLLTNDGDLAPLMELSSTGIVRTYSARVYGNITEEKLRGMRSGCTIDGVRYKDMLVRVEGGGGKGREGRSAWLTIECTEGK 929 VGRLD N EGLLLLTNDGDLA MEL TG R Y RV+G + E L+G++ G IDG++YK + ++ + ++GR+AWL++ TEGK Sbjct: 102 VGRLDMNTEGLLLLTNDGDLARYMELPETGWTRRYRVRVFGQVDEAALQGLKRGIEIDGIKYKSIKAELD----EKQQGRNAWLSVALTEGK 189
BLAST of mRNA_L-elsbetiae_contig6334.14986.1 vs. uniprot
Match: A0A835ZDT5_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDT5_9STRA) HSP 1 Score: 102 bits (254), Expect = 8.980e-21 Identity = 48/94 (51.06%), Postives = 64/94 (68.09%), Query Frame = 3 Query: 648 RPVGRLDYNAEGLLLLTNDGDLAPLMELSSTGIVRTYSARVYGNITEEKLRGMRSGCTIDGVRYKDMLVRVEGGGGKGREGRSAWLTIECTEGK 929 +PVGRLD+ EGLLLLT+DGDLA +E + G+ R Y RV+G++T EKLR M+ GC I+GV YK M+V ++ G E + WL + C EGK Sbjct: 152 KPVGRLDFMTEGLLLLTDDGDLARKLEHPTVGLRREYRVRVFGSVTAEKLRTMQRGCVIEGVHYKGMVVNIDRG-----EKHNTWLVVHCVEGK 240 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6334.14986.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6334.14986.1 >prot_L-elsbetiae_contig6334.14986.1 ID=prot_L-elsbetiae_contig6334.14986.1|Name=mRNA_L-elsbetiae_contig6334.14986.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=160bp MSVCLFVGPFRACFFNVFFGNRLLSMSMLMVAMGEHWSDRRATRPNCGWRback to top mRNA from alignment at L-elsbetiae_contig6334:6752..9796- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig6334.14986.1 ID=mRNA_L-elsbetiae_contig6334.14986.1|Name=mRNA_L-elsbetiae_contig6334.14986.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3045bp|location=Sequence derived from alignment at L-elsbetiae_contig6334:6752..9796- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig6334:6752..9796- >mRNA_L-elsbetiae_contig6334.14986.1 ID=mRNA_L-elsbetiae_contig6334.14986.1|Name=mRNA_L-elsbetiae_contig6334.14986.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=960bp|location=Sequence derived from alignment at L-elsbetiae_contig6334:6752..9796- (Laminarionema elsbetiae ELsaHSoW15)back to top |