mRNA_L-elsbetiae_contig6324.14971.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6324.14971.1
Unique NamemRNA_L-elsbetiae_contig6324.14971.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6324.14971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6324contigL-elsbetiae_contig6324:5117..5517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size401
Cds size384
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816697.6158009-UTR-L-elsbetiae_contig6324:5116..51331622816697.6158009-UTR-L-elsbetiae_contig6324:5116..5133Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6324 5117..5133 +
1691683747.9353464-UTR-L-elsbetiae_contig6324:5116..51331691683747.9353464-UTR-L-elsbetiae_contig6324:5116..5133Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6324 5117..5133 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816697.6262991-CDS-L-elsbetiae_contig6324:5133..55171622816697.6262991-CDS-L-elsbetiae_contig6324:5133..5517Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6324 5134..5517 +
1691683747.9478776-CDS-L-elsbetiae_contig6324:5133..55171691683747.9478776-CDS-L-elsbetiae_contig6324:5133..5517Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6324 5134..5517 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6324.14971.1prot_L-elsbetiae_contig6324.14971.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6324 5134..5517 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6324.14971.1

>prot_L-elsbetiae_contig6324.14971.1 ID=prot_L-elsbetiae_contig6324.14971.1|Name=mRNA_L-elsbetiae_contig6324.14971.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=128bp
MPPPPLHRGPAQEIVAIDWFPARDRRATGHSSGHVLAVLLVCLPACLPAR
KHRHHHAQGLQSPKRHKAIATGRPGFQGFIPTPPRRPAANPGQKPPPTAL
APVFPLSRGFCSASATNERTNQRTQTRR
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mRNA from alignment at L-elsbetiae_contig6324:5117..5517+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6324.14971.1 ID=mRNA_L-elsbetiae_contig6324.14971.1|Name=mRNA_L-elsbetiae_contig6324.14971.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=401bp|location=Sequence derived from alignment at L-elsbetiae_contig6324:5117..5517+ (Laminarionema elsbetiae ELsaHSoW15)
CTTGGGGCGAGCCTCCGATGCCCCCCCCCCCCCTACATAGGGGGCCCGCA
CAAGAAATAGTAGCAATCGATTGGTTCCCTGCACGAGACCGACGGGCGAC
GGGACACAGCAGCGGCCATGTACTCGCGGTGCTACTTGTCTGCCTGCCTG
CCTGCCTGCCTGCCCGCAAACACCGACACCATCACGCACAGGGTTTACAA
TCGCCGAAACGGCATAAAGCCATCGCAACCGGTCGGCCGGGGTTCCAGGG
GTTCATCCCCACACCGCCTCGTCGTCCTGCAGCAAACCCAGGGCAAAAAC
CACCACCTACCGCCCTTGCTCCCGTTTTCCCTCTCTCGCGCGGCTTTTGC
TCTGCTTCGGCAACAAATGAACGAACCAACCAACGAACGCAGACAAGGCG
C
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6324:5117..5517+

>mRNA_L-elsbetiae_contig6324.14971.1 ID=mRNA_L-elsbetiae_contig6324.14971.1|Name=mRNA_L-elsbetiae_contig6324.14971.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=768bp|location=Sequence derived from alignment at L-elsbetiae_contig6324:5117..5517+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCCCCCCCCCCCTACATAGGGGGCCCGCACAAGAAATAGTAGCAAT
CGATTGGTTCCCTGCACGAGACCGACGGGCGACGGGACACAGCAGCGGCC
ATGTACTCGCGGTGCTACTTGTCTGCCTGCCTGCCTGCCTGCCTGCCCGC
AAACACCGACACCATCACGCACAGGGTTTACAATCGCCGAAACGGCATAA
AGCCATCGCAACCGGTCGGCCGGGGTTCCAGGGGTTCATCCCCACACCGC
CTCGTCGTCCTGCAGCAAACCCAGGGCAAAAACCACCACCTACCGCCCTT
GCTCCCGTTTTCCCTCTCTCGCGCGGCTTTTGCTCTGCTTCGGCAACAAA
TGAACGAACCAACCAACGAACGCAGACAAGGCGCATGCCCCCCCCCCCCC
TACATAGGGGGCCCGCACAAGAAATAGTAGCAATCGATTGGTTCCCTGCA
CGAGACCGACGGGCGACGGGACACAGCAGCGGCCATGTACTCGCGGTGCT
ACTTGTCTGCCTGCCTGCCTGCCTGCCTGCCCGCAAACACCGACACCATC
ACGCACAGGGTTTACAATCGCCGAAACGGCATAAAGCCATCGCAACCGGT
CGGCCGGGGTTCCAGGGGTTCATCCCCACACCGCCTCGTCGTCCTGCAGC
AAACCCAGGGCAAAAACCACCACCTACCGCCCTTGCTCCCGTTTTCCCTC
TCTCGCGCGGCTTTTGCTCTGCTTCGGCAACAAATGAACGAACCAACCAA
CGAACGCAGACAAGGCGC
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