mRNA_L-elsbetiae_contig6318.14960.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6318.14960.1
Unique NamemRNA_L-elsbetiae_contig6318.14960.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6318.14960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6318contigL-elsbetiae_contig6318:5204..5934 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size262
Cds size255
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6318.14960.1prot_L-elsbetiae_contig6318.14960.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6318 5204..5927 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816696.7102492-CDS-L-elsbetiae_contig6318:5203..54291622816696.7102492-CDS-L-elsbetiae_contig6318:5203..5429Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6318 5204..5429 -
1691683747.2843156-CDS-L-elsbetiae_contig6318:5203..54291691683747.2843156-CDS-L-elsbetiae_contig6318:5203..5429Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6318 5204..5429 -
1622816696.722657-CDS-L-elsbetiae_contig6318:5898..59271622816696.722657-CDS-L-elsbetiae_contig6318:5898..5927Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6318 5899..5927 -
1691683747.2958424-CDS-L-elsbetiae_contig6318:5898..59271691683747.2958424-CDS-L-elsbetiae_contig6318:5898..5927Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6318 5899..5927 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816696.732894-UTR-L-elsbetiae_contig6318:5927..59341622816696.732894-UTR-L-elsbetiae_contig6318:5927..5934Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6318 5928..5934 -
1691683747.3063693-UTR-L-elsbetiae_contig6318:5927..59341691683747.3063693-UTR-L-elsbetiae_contig6318:5927..5934Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6318 5928..5934 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6318.14960.1

>prot_L-elsbetiae_contig6318.14960.1 ID=prot_L-elsbetiae_contig6318.14960.1|Name=mRNA_L-elsbetiae_contig6318.14960.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=85bp
MAACPSVVSSLNDLPGRGTGSTAKRLDFATSGNDQHHNHPKTARVSECAI
GSSGGGTKPRAGGRGGTGRCALDTQEAGPVVSDDC
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mRNA from alignment at L-elsbetiae_contig6318:5204..5934-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6318.14960.1 ID=mRNA_L-elsbetiae_contig6318.14960.1|Name=mRNA_L-elsbetiae_contig6318.14960.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=731bp|location=Sequence derived from alignment at L-elsbetiae_contig6318:5204..5934- (Laminarionema elsbetiae ELsaHSoW15)
GGCGGCGATGGCAGCCTGCCCGTCGGTTGTGTCTAGGTGCGCAACCAGAG
TGGGGAACGTACGGCACGGGGATAGCACCGCTTGCGCAGACTCTTGAGCA
GTGCCACCCCAAGCATTGAAGATCGCTGGGTGGCGGAGAAGGGGGAAAGA
TACAGGCCTGAATGCGGGTAAATGAACGGTCGCGTAAGTGTTAGTGTTGC
TTTCGGGGTGCGGTAGATGCCTGCCTACGCGACCACCACGTAACGCATAG
TAGACATCGCCACGTGTTGCGGGATAAACGACACCCAGCTCGTTCTGGGC
CGCCCCAACTTCAACCAAAAATACTGATTCAAGACAATAAAGCCAACCCT
TTATCACGAGCAAGGGTCACAAGCCAAACAGCCTTGGTCATCCCATTAGG
AACACAAGGGCCCATAGTCTGTGCATCTGCAGGATTTTTCTCGGTTCATA
TTCACCCCCCCCCCCCCCCCCACGCGTGCTTTTTACCCACAAACATCCGC
GACAGCCTGAACGATCTTCCGGGGAGAGGCACCGGGAGCACCGCTAAGCG
CCTGGACTTCGCCACAAGCGGGAACGATCAACATCACAACCACCCGAAAA
CCGCGCGCGTCTCCGAGTGCGCCATCGGCTCCAGTGGGGGCGGCACCAAA
CCCCGCGCGGGTGGTAGGGGCGGCACCGGCCGCTGTGCTCTTGATACTCA
GGAGGCGGGTCCTGTAGTTTCCGACGACTGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6318:5204..5934-

>mRNA_L-elsbetiae_contig6318.14960.1 ID=mRNA_L-elsbetiae_contig6318.14960.1|Name=mRNA_L-elsbetiae_contig6318.14960.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=510bp|location=Sequence derived from alignment at L-elsbetiae_contig6318:5204..5934- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCAGCCTGCCCGTCGGTTGTGTCTAGATGGCAGCCTGCCCGTCGGTT
GTGTCTAGCCTGAACGATCTTCCGGGGAGAGGCACCGGGAGCACCGCTAA
GCGCCTGGACTTCGCCACAAGCGGGAACGATCAACATCACAACCACCCGA
AAACCGCGCGCGTCTCCGAGTGCGCCATCGGCTCCAGTGGGGGCGGCACC
AAACCCCGCGCGGGTGGTAGGGGCGGCACCGGCCGCTGTGCTCTTGATAC
TCAGGAGGCGGGTCCTGTAGTTTCCGACGACTGCCCTGAACGATCTTCCG
GGGAGAGGCACCGGGAGCACCGCTAAGCGCCTGGACTTCGCCACAAGCGG
GAACGATCAACATCACAACCACCCGAAAACCGCGCGCGTCTCCGAGTGCG
CCATCGGCTCCAGTGGGGGCGGCACCAAACCCCGCGCGGGTGGTAGGGGC
GGCACCGGCCGCTGTGCTCTTGATACTCAGGAGGCGGGTCCTGTAGTTTC
CGACGACTGC
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