mRNA_L-elsbetiae_contig6229.14824.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6229.14824.1
Unique NamemRNA_L-elsbetiae_contig6229.14824.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6229.14824.1 vs. uniprot
Match: A0A6H5KWU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWU7_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 4.480e-47
Identity = 118/226 (52.21%), Postives = 136/226 (60.18%), Query Frame = -1 
Query:    1 QSSGTGDTLLIRNALGVEVVIQSLEHTGWGASGSGDGGDRWGGNSSGGKWDNSNGSEYGDVAPEGFADFFSGGVVNGAGATPAA--------------------AAARSFHRRDVFRPTAVAPGQAVECRLPARTDWRDSSAVAADFLVQVPGYHTVAGIRIGARGARAYPLVAAEAATARDSGSSRKAHGVAERFMRTPGRGGAALNKKGLALVVDVGEKPSTGG 618
            QSS + DTLLIRN LGVEVV+QSL+ T W A   G GG  WGG++ GG WD    S  GD+A + F DFFS     GA A                         A    H RD+ RPTAVA G A+ECRLPA+T+WRD   +AAD LV VPG+ TV G+++G RGARAYPL+        DS  SR A GVAERFMR P +G AALNK GLALVVDV EKP   G
Sbjct:  452 QSSESSDTLLIRNTLGVEVVVQSLDAT-WEA---GHGGGGWGGDAPGGSWDR---SVDGDIAAKCFDDFFS---EQGAAAVXXXXXXXXXXXXXXXXXXXXXXXGAEHPSHVRDLSRPTAVAAGHAIECRLPAKTEWRDGGVIAADVLVHVPGFQTVGGVQVGGRGARAYPLIQLSQQPVGDS-MSRHARGVAERFMRVPVKG-AALNKVGLALVVDVREKPVAAG 665
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BLAST of mRNA_L-elsbetiae_contig6229.14824.1 vs. uniprot
Match: D7G2C6_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C6_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 1.790e-36
Identity = 103/217 (47.47%), Postives = 120/217 (55.30%), Query Frame = -1 
Query:    1 QSSGTGDTLLIRNALGVEVVIQSLEHTGWGASGSGDGGDRWGGNSSGGKWDNSNGSEYGDVAPEGFADFFSGGVVNGAGATPAAAAARSFHRRDVFRPTAVAPGQAVECRLPARTDWRDSSAVAADFLVQVPGYHTVAGIRIGARGARAYPLV---------AAEAATARDSGSS--RKAHGVAERFMRTPGRGGAALNKKGLALVVDVGEKPSTGG 618
            QSS +  TLLIRN LGVEVV+QSL+ T WGA   GDGG  WG ++ GG WD                       VN                           G A+ECRLPA+T+WRD   +AAD LV VPG+ TVAGI++G RGARAYPL+         A ++ATA+  G S  R A GVAERFM  P +G AALNK GLALVVDVGEKP   G
Sbjct: 2756 QSSESSGTLLIRNTLGVEVVVQSLDAT-WGA---GDGGGGWGCDAPGGSWDRH---------------------VN---------------------------GHAIECRLPAKTEWRDGGVIAADVLVHVPGFQTVAGIQVGGRGARAYPLIQLSQPPAAAAGQSATAQPVGDSMSRHARGVAERFMCVPVKG-AALNKVGLALVVDVGEKPVAAG 2919
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6229.14824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KWU7_9PHAE4.480e-4752.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2C6_ECTSI1.790e-3647.47C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6229contigL-elsbetiae_contig6229:2785..3424 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size640
Cds size639
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816684.2242408-CDS-L-elsbetiae_contig6229:2784..34231622816684.2242408-CDS-L-elsbetiae_contig6229:2784..3423Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6229 2785..3423 +
1691683738.1907804-CDS-L-elsbetiae_contig6229:2784..34231691683738.1907804-CDS-L-elsbetiae_contig6229:2784..3423Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6229 2785..3423 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6229.14824.1prot_L-elsbetiae_contig6229.14824.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6229 2785..3423 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6229.14824.1

>prot_L-elsbetiae_contig6229.14824.1 ID=prot_L-elsbetiae_contig6229.14824.1|Name=mRNA_L-elsbetiae_contig6229.14824.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=213bp
AAGGWFFADIHHERQPLLVQRGAAATGGAHEPLRYAVRLPARPAVSRRRR
LRRHERVCSGSSCPDPDARHGVVARNLHQKICGHGTAVSPVRPGGQTALD
RLPRGHRRRAKDVAAMKRTRCCCGGGSTSAVDDTPAEKVSKSFGCNITVL
AAVAIIPFTAGGIPSPPVAAVAAAACSPTCVFKALNHHLYPESVANEQRV
PGTGALRAIKAWL
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mRNA from alignment at L-elsbetiae_contig6229:2785..3424+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6229.14824.1 ID=mRNA_L-elsbetiae_contig6229.14824.1|Name=mRNA_L-elsbetiae_contig6229.14824.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=640bp|location=Sequence derived from alignment at L-elsbetiae_contig6229:2785..3424+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGCCGGTGGATGGTTTTTCGCCGACATCCACCACGAGCGCCAGCCCCT
TCTTGTTCAACGCGGCGCCGCCGCGACCGGGGGTGCGCATGAACCGCTCC
GCTACGCCGTGCGCCTTCCTGCTCGACCCGCTGTCTCTCGCCGTCGCCGC
CTCCGCCGCCACGAGCGGGTATGCTCGGGCTCCTCTTGCCCCGATCCGGA
TGCCCGCCACGGTGTGGTAGCCCGGAACCTGCACCAGAAAATCTGCGGCC
ACGGCACTGCTGTCTCTCCAGTCCGTCCTGGCGGGCAAACGGCACTCGAC
CGCTTGCCCCGGGGCCACCGCCGTCGGGCGAAAGACGTCGCGGCGATGAA
AAGAACGCGCTGCTGCTGCGGCGGGGGTAGCACCAGCGCCGTTGACGACA
CCCCCGCTGAAAAAGTCAGCAAATCCTTCGGGTGCAACATCACCGTACTC
GCTGCCGTTGCTATTATCCCATTTACCGCCGGAGGAATTCCCTCCCCACC
TGTCGCCGCCGTCGCCGCTGCCGCTTGCTCCCCAACCTGTGTGTTCAAGG
CTTTGAATCACCACCTCTACCCCGAGAGCGTTGCGAATGAGCAACGTGTC
CCCGGTACCGGAGCTCTGCGCGCAATCAAGGCGTGGCTCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6229:2785..3424+

>mRNA_L-elsbetiae_contig6229.14824.1 ID=mRNA_L-elsbetiae_contig6229.14824.1|Name=mRNA_L-elsbetiae_contig6229.14824.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1278bp|location=Sequence derived from alignment at L-elsbetiae_contig6229:2785..3424+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGCCGGTGGATGGTTTTTCGCCGACATCCACCACGAGCGCCAGCCCCT
TCTTGTTCAACGCGGCGCCGCCGCGACCGGGGGTGCGCATGAACCGCTCC
GCTACGCCGTGCGCCTTCCTGCTCGACCCGCTGTCTCTCGCCGTCGCCGC
CTCCGCCGCCACGAGCGGGTATGCTCGGGCTCCTCTTGCCCCGATCCGGA
TGCCCGCCACGGTGTGGTAGCCCGGAACCTGCACCAGAAAATCTGCGGCC
ACGGCACTGCTGTCTCTCCAGTCCGTCCTGGCGGGCAAACGGCACTCGAC
CGCTTGCCCCGGGGCCACCGCCGTCGGGCGAAAGACGTCGCGGCGATGAA
AAGAACGCGCTGCTGCTGCGGCGGGGGTAGCACCAGCGCCGTTGACGACA
CCCCCGCTGAAAAAGTCAGCAAATCCTTCGGGTGCAACATCACCGTACTC
GCTGCCGTTGCTATTATCCCATTTACCGCCGGAGGAATTCCCTCCCCACC
TGTCGCCGCCGTCGCCGCTGCCGCTTGCTCCCCAACCTGTGTGTTCAAGG
CTTTGAATCACCACCTCTACCCCGAGAGCGTTGCGAATGAGCAACGTGTC
CCCGGTACCGGAGCTCTGCGCGCAATCAAGGCGTGGCTCGCCGCCGGTGG
ATGGTTTTTCGCCGACATCCACCACGAGCGCCAGCCCCTTCTTGTTCAAC
GCGGCGCCGCCGCGACCGGGGGTGCGCATGAACCGCTCCGCTACGCCGTG
CGCCTTCCTGCTCGACCCGCTGTCTCTCGCCGTCGCCGCCTCCGCCGCCA
CGAGCGGGTATGCTCGGGCTCCTCTTGCCCCGATCCGGATGCCCGCCACG
GTGTGGTAGCCCGGAACCTGCACCAGAAAATCTGCGGCCACGGCACTGCT
GTCTCTCCAGTCCGTCCTGGCGGGCAAACGGCACTCGACCGCTTGCCCCG
GGGCCACCGCCGTCGGGCGAAAGACGTCGCGGCGATGAAAAGAACGCGCT
GCTGCTGCGGCGGGGGTAGCACCAGCGCCGTTGACGACACCCCCGCTGAA
AAAGTCAGCAAATCCTTCGGGTGCAACATCACCGTACTCGCTGCCGTTGC
TATTATCCCATTTACCGCCGGAGGAATTCCCTCCCCACCTGTCGCCGCCG
TCGCCGCTGCCGCTTGCTCCCCAACCTGTGTGTTCAAGGCTTTGAATCAC
CACCTCTACCCCGAGAGCGTTGCGAATGAGCAACGTGTCCCCGGTACCGG
AGCTCTGCGCGCAATCAAGGCGTGGCTC
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