mRNA_L-elsbetiae_contig6220.14813.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6220.14813.1
Unique NamemRNA_L-elsbetiae_contig6220.14813.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig6220.14813.1 vs. uniprot
Match: UPI001423C659 (sugar phosphate isomerase/epimerase n=1 Tax=Pelagibius litoralis TaxID=374515 RepID=UPI001423C659)

HSP 1 Score: 318 bits (814), Expect = 3.740e-108
Identity = 149/152 (98.03%), Postives = 151/152 (99.34%), Query Frame = 1
Query:   13 QGLAKTLDYARGLDMPIAIEPLHPMYAADRACVNTLSQALDLCDDLGAGIGVALDVYHVWWDPDLAAQVKRAGKDRLLGFHICDWLVPTRDMLTDRGMMGDGVIDLPGIRAMAEATGFRGLNEVEIFSAENWWKRDADEVLTEVVARGRDCC 468
            +GLAKTLDYARGLDMPIAIEPLHPMYAADRACVNTLSQALDLCDDLGAGIGVALDVYHVWWDPDLAAQVKRAGKDRLLGFHICDWLVPTRDMLTDRGMMGDGVIDLPGIRAM EATGFRGLNEVEIFS+ENWWKRDADEVLTEVVARGRDCC
Sbjct:  121 EGLAKTLDYARGLDMPIAIEPLHPMYAADRACVNTLSQALDLCDDLGAGIGVALDVYHVWWDPDLAAQVKRAGKDRLLGFHICDWLVPTRDMLTDRGMMGDGVIDLPGIRAMVEATGFRGLNEVEIFSSENWWKRDADEVLTEVVARGRDCC 272          
BLAST of mRNA_L-elsbetiae_contig6220.14813.1 vs. uniprot
Match: UPI001F23EEB2 (sugar phosphate isomerase/epimerase n=1 Tax=Sinorhizobium medicae TaxID=110321 RepID=UPI001F23EEB2)

HSP 1 Score: 260 bits (665), Expect = 7.280e-86
Identity = 117/152 (76.97%), Postives = 132/152 (86.84%), Query Frame = 1
Query:   13 QGLAKTLDYARGLDMPIAIEPLHPMYAADRACVNTLSQALDLCDDLGAGIGVALDVYHVWWDPDLAAQVKRAGKDRLLGFHICDWLVPTRDMLTDRGMMGDGVIDLPGIRAMAEATGFRGLNEVEIFSAENWWKRDADEVLTEVVARGRDCC 468
            +GLA+TLDYAR +DMPIAIEPLHPMYAADRACVNTL QALD+CD+LG GIGVA+DVYHVWWDPDL  Q++RAGK+R+L FHICDWLVPTRD+LTDRGMMGDGV+DL G+RA  EA GF GLNEVEIFS  NWW RDADEV+  +  RGR  C
Sbjct:   95 EGLAQTLDYARSVDMPIAIEPLHPMYAADRACVNTLRQALDICDELGTGIGVAVDVYHVWWDPDLLPQLRRAGKERILAFHICDWLVPTRDLLTDRGMMGDGVVDLRGLRAAVEAQGFTGLNEVEIFSEHNWWTRDADEVMRTIADRGRAFC 246          
BLAST of mRNA_L-elsbetiae_contig6220.14813.1 vs. uniprot
Match: A0A2Z2NTE2_9GAMM (AP_endonuc_2 domain-containing protein n=1 Tax=Granulosicoccus antarcticus IMCC3135 TaxID=1192854 RepID=A0A2Z2NTE2_9GAMM)

HSP 1 Score: 261 bits (667), Expect = 8.490e-86
Identity = 117/155 (75.48%), Postives = 133/155 (85.81%), Query Frame = 1
Query:    1 DDAHQGLAKTLDYARGLDMPIAIEPLHPMYAADRACVNTLSQALDLCDDLGAGIGVALDVYHVWWDPDLAAQVKRAGKDRLLGFHICDWLVPTRDMLTDRGMMGDGVIDLPGIRAMAEATGFRGLNEVEIFSAENWWKRDADEVLTEVVARGRDC 465
            D   QGL+KTLDYAR ++MPIAIEPLHPMYAADRACVNT +QALD+CD LG GIGVALDVYH+WWDPD+  Q+ RAGK+RLL FH+CDWLVPT DML+DRGMMGDGVID+P  R++ EA GF GLNEVEIFSAENWWKRD DEVL E++ R R C
Sbjct:  118 DIVTQGLSKTLDYARTVNMPIAIEPLHPMYAADRACVNTTAQALDICDQLGTGIGVALDVYHIWWDPDIQTQIARAGKERLLAFHLCDWLVPTTDMLSDRGMMGDGVIDIPHYRSLVEAQGFDGLNEVEIFSAENWWKRDPDEVLQEIINRARQC 272          
BLAST of mRNA_L-elsbetiae_contig6220.14813.1 vs. uniprot
Match: A0A1V0GYI7_9RHOB (Endonuclease n=4 Tax=Paracoccus TaxID=265 RepID=A0A1V0GYI7_9RHOB)

HSP 1 Score: 261 bits (668), Expect = 1.040e-85
Identity = 118/152 (77.63%), Postives = 132/152 (86.84%), Query Frame = 1
Query:   13 QGLAKTLDYARGLDMPIAIEPLHPMYAADRACVNTLSQALDLCDDLGAGIGVALDVYHVWWDPDLAAQVKRAGKDRLLGFHICDWLVPTRDMLTDRGMMGDGVIDLPGIRAMAEATGFRGLNEVEIFSAENWWKRDADEVLTEVVARGRDCC 468
            +GLAKTLDYAR +DMPIAIEPLHPMYAADRACVNTL QALD+CD LG+GIG A+DVYHVWWDPDL  Q++RAG++R+L FHICDWLVPTRD+LTDRGMMGDGVIDL G+RA  EA  F GLNEVEIFS  NWWKRD DEVL  ++ RGR CC
Sbjct:  138 EGLAKTLDYARTVDMPIAIEPLHPMYAADRACVNTLGQALDICDQLGSGIGAAVDVYHVWWDPDLLPQLRRAGQERILAFHICDWLVPTRDLLTDRGMMGDGVIDLRGLRAAVEAESFTGLNEVEIFSELNWWKRDPDEVLQTLIERGRTCC 289          
BLAST of mRNA_L-elsbetiae_contig6220.14813.1 vs. uniprot
Match: A0A2N5XN97_9HYPH (Endonuclease n=1 Tax=Cohaesibacter celericrescens TaxID=2067669 RepID=A0A2N5XN97_9HYPH)

HSP 1 Score: 260 bits (664), Expect = 2.420e-85
Identity = 118/151 (78.15%), Postives = 130/151 (86.09%), Query Frame = 1
Query:   13 QGLAKTLDYARGLDMPIAIEPLHPMYAADRACVNTLSQALDLCDDLGAGIGVALDVYHVWWDPDLAAQVKRAGKDRLLGFHICDWLVPTRDMLTDRGMMGDGVIDLPGIRAMAEATGFRGLNEVEIFSAENWWKRDADEVLTEVVARGRDC 465
            +GLAKTLDYAR   MP+AIEPLHPMYAADRAC+NTL QALD+CD+LG GIGVA DVYH+WWDP+LA Q+KRAGK RLL +HICDWLVPT DMLTDRGMMGDGVID+  IR M EA GF GLNEVEIFSA NWWKRDADEV+  +V R RDC
Sbjct:  122 EGLAKTLDYARSQKMPVAIEPLHPMYAADRACINTLRQALDVCDELGDGIGVAADVYHIWWDPELADQIKRAGKSRLLAYHICDWLVPTSDMLTDRGMMGDGVIDIAAIRKMVEAEGFCGLNEVEIFSANNWWKRDADEVMRTIVDRARDC 272          
BLAST of mRNA_L-elsbetiae_contig6220.14813.1 vs. uniprot
Match: A0A1H9WLK2_9RHOB (Sugar phosphate isomerase/epimerase n=1 Tax=Tranquillimonas rosea TaxID=641238 RepID=A0A1H9WLK2_9RHOB)

HSP 1 Score: 260 bits (664), Expect = 2.670e-85
Identity = 116/156 (74.36%), Postives = 134/156 (85.90%), Query Frame = 1
Query:    1 DDAHQGLAKTLDYARGLDMPIAIEPLHPMYAADRACVNTLSQALDLCDDLGAGIGVALDVYHVWWDPDLAAQVKRAGKDRLLGFHICDWLVPTRDMLTDRGMMGDGVIDLPGIRAMAEATGFRGLNEVEIFSAENWWKRDADEVLTEVVARGRDCC 468
            +   +GLA+TLD+ARG  + +AIEPLHPMYAADRACVNT+  ALD+CD LG GIGVA+DVYHVWWDP+L+ Q++RAG+DRL+ FH+CDWLVPTRD+LTDRGMMGDGVIDLPG+R   EA GF GLNEVEIFSAENWWKRDADEVL  VV RGR  C
Sbjct:  120 ETVEEGLARTLDHARGAGVKVAIEPLHPMYAADRACVNTMGHALDICDRLGEGIGVAVDVYHVWWDPNLSRQIERAGRDRLMAFHLCDWLVPTRDLLTDRGMMGDGVIDLPGLRRQVEAHGFDGLNEVEIFSAENWWKRDADEVLATVVERGRTAC 275          
BLAST of mRNA_L-elsbetiae_contig6220.14813.1 vs. uniprot
Match: A0A848TZP1_9GAMM (Sugar phosphate isomerase/epimerase n=1 Tax=Granulosicoccus sp. TaxID=1943584 RepID=A0A848TZP1_9GAMM)

HSP 1 Score: 258 bits (658), Expect = 1.910e-84
Identity = 115/151 (76.16%), Postives = 132/151 (87.42%), Query Frame = 1
Query:   13 QGLAKTLDYARGLDMPIAIEPLHPMYAADRACVNTLSQALDLCDDLGAGIGVALDVYHVWWDPDLAAQVKRAGKDRLLGFHICDWLVPTRDMLTDRGMMGDGVIDLPGIRAMAEATGFRGLNEVEIFSAENWWKRDADEVLTEVVARGRDC 465
            +GLA+TL+YAR LDMPIAIEPLHPMYAADRACVNT +QALDLCD LG GIGVALD+YH+WWDPD+ AQ++RAGK RLL FH+CDWLVPT DML+DRGMMGDG+ID+   RAM E +GF GLNEVEIFSAENWWKRD D+VL+E+V R   C
Sbjct:  121 EGLARTLEYARKLDMPIAIEPLHPMYAADRACVNTTAQALDLCDQLGEGIGVALDLYHIWWDPDIRAQIQRAGKARLLAFHLCDWLVPTTDMLSDRGMMGDGIIDIASYRAMVEDSGFDGLNEVEIFSAENWWKRDPDDVLSEIVRRAEQC 271          
BLAST of mRNA_L-elsbetiae_contig6220.14813.1 vs. uniprot
Match: UPI0018EB8A4C (sugar phosphate isomerase/epimerase n=1 Tax=Rhizobium sp. ASV20 TaxID=2795126 RepID=UPI0018EB8A4C)

HSP 1 Score: 255 bits (652), Expect = 1.610e-83
Identity = 112/152 (73.68%), Postives = 131/152 (86.18%), Query Frame = 1
Query:   13 QGLAKTLDYARGLDMPIAIEPLHPMYAADRACVNTLSQALDLCDDLGAGIGVALDVYHVWWDPDLAAQVKRAGKDRLLGFHICDWLVPTRDMLTDRGMMGDGVIDLPGIRAMAEATGFRGLNEVEIFSAENWWKRDADEVLTEVVARGRDCC 468
            +GLA+TLDYAR +DM +AIEPLHPMYAADRACVNT+ QALD+CD LG GIGVA+DVYHVWWDP L  Q+KRAGK+R+L FH+CDWL+PTRD+LTDRGMMGDGVIDL G+R   EA GF GLNEVEIFS +NWW+RDAD+V+  +  RGR CC
Sbjct:  121 EGLARTLDYARTVDMAVAIEPLHPMYAADRACVNTVKQALDICDQLGTGIGVAIDVYHVWWDPALLPQLKRAGKERILAFHLCDWLLPTRDLLTDRGMMGDGVIDLRGLRVAVEAEGFDGLNEVEIFSEQNWWRRDADDVMRVIADRGRSCC 272          
BLAST of mRNA_L-elsbetiae_contig6220.14813.1 vs. uniprot
Match: A0A2A5G7D4_9HYPH (Endonuclease n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A2A5G7D4_9HYPH)

HSP 1 Score: 254 bits (648), Expect = 6.970e-83
Identity = 114/150 (76.00%), Postives = 128/150 (85.33%), Query Frame = 1
Query:   16 GLAKTLDYARGLDMPIAIEPLHPMYAADRACVNTLSQALDLCDDLGAGIGVALDVYHVWWDPDLAAQVKRAGKDRLLGFHICDWLVPTRDMLTDRGMMGDGVIDLPGIRAMAEATGFRGLNEVEIFSAENWWKRDADEVLTEVVARGRDC 465
            GLAKTL+YAR +DM IAIEPLHPMYAADRACVNTL QALD+CD LG  IG A+DVYHVWWDPD+  Q+KRAGKDRLL FHICDWLVPT+DMLTDRGMMGDG ID+  +RA  EA GF GLNEVEIFSA+NWWK+D D+VL  ++ RGR C
Sbjct:  125 GLAKTLEYARTVDMKIAIEPLHPMYAADRACVNTLGQALDICDQLGDXIGAAVDVYHVWWDPDILPQIKRAGKDRLLAFHICDWLVPTQDMLTDRGMMGDGAIDIXALRAAVEAEGFNGLNEVEIFSAQNWWKQDPDQVLXTIIERGRGC 274          
BLAST of mRNA_L-elsbetiae_contig6220.14813.1 vs. uniprot
Match: A0A2T0RKX8_9RHOB (Sugar phosphate isomerase/epimerase n=1 Tax=Aliiruegeria haliotis TaxID=1280846 RepID=A0A2T0RKX8_9RHOB)

HSP 1 Score: 251 bits (642), Expect = 5.500e-82
Identity = 111/152 (73.03%), Postives = 128/152 (84.21%), Query Frame = 1
Query:   13 QGLAKTLDYARGLDMPIAIEPLHPMYAADRACVNTLSQALDLCDDLGAGIGVALDVYHVWWDPDLAAQVKRAGKDRLLGFHICDWLVPTRDMLTDRGMMGDGVIDLPGIRAMAEATGFRGLNEVEIFSAENWWKRDADEVLTEVVARGRDCC 468
            +GLA TL+YARG+ +P+AIEPLHP YA DRACVNT SQALD+CD LG GIGVALDVYH+WWDP++  Q+ RAGK+RLL FHICDWLVPT+D+L DRGMMGDGV D+P +RA  EA GF GLNEVEIFSAE WWKRD D+VL  +VARG  CC
Sbjct:  122 EGLAATLEYARGVGVPVAIEPLHPAYAGDRACVNTTSQALDICDRLGDGIGVALDVYHIWWDPEIRRQIARAGKERLLAFHICDWLVPTQDILEDRGMMGDGVADIPALRAEVEAAGFTGLNEVEIFSAETWWKRDPDDVLKTIVARGESCC 273          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6220.14813.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001423C6593.740e-10898.03sugar phosphate isomerase/epimerase n=1 Tax=Pelagi... [more]
UPI001F23EEB27.280e-8676.97sugar phosphate isomerase/epimerase n=1 Tax=Sinorh... [more]
A0A2Z2NTE2_9GAMM8.490e-8675.48AP_endonuc_2 domain-containing protein n=1 Tax=Gra... [more]
A0A1V0GYI7_9RHOB1.040e-8577.63Endonuclease n=4 Tax=Paracoccus TaxID=265 RepID=A0... [more]
A0A2N5XN97_9HYPH2.420e-8578.15Endonuclease n=1 Tax=Cohaesibacter celericrescens ... [more]
A0A1H9WLK2_9RHOB2.670e-8574.36Sugar phosphate isomerase/epimerase n=1 Tax=Tranqu... [more]
A0A848TZP1_9GAMM1.910e-8476.16Sugar phosphate isomerase/epimerase n=1 Tax=Granul... [more]
UPI0018EB8A4C1.610e-8373.68sugar phosphate isomerase/epimerase n=1 Tax=Rhizob... [more]
A0A2A5G7D4_9HYPH6.970e-8376.00Endonuclease n=1 Tax=Hyphomicrobiales bacterium Ta... [more]
A0A2T0RKX8_9RHOB5.500e-8273.03Sugar phosphate isomerase/epimerase n=1 Tax=Aliiru... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6220contigL-elsbetiae_contig6220:759..1229 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score247.3
Seed ortholog evalue4.8e-63
Seed eggNOG ortholog1122214.AQWH01000006_gene2329
Preferred nameiolI
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Xylose isomerase-like TIM barrel
EggNOG OGs1Q173@1224,2PKH3@255475,2TTFM@28211,COG1082@1,COG1082@2
COG Functional cat.G
Best tax levelAurantimonadaceae
Best eggNOG OGNA|NA|NA
Exons1
Model size471
Cds size471
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816683.563488-CDS-L-elsbetiae_contig6220:758..12291622816683.563488-CDS-L-elsbetiae_contig6220:758..1229Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6220 759..1229 -
1691683737.7467809-CDS-L-elsbetiae_contig6220:758..12291691683737.7467809-CDS-L-elsbetiae_contig6220:758..1229Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6220 759..1229 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6220.14813.1prot_L-elsbetiae_contig6220.14813.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6220 759..1229 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6220.14813.1

>prot_L-elsbetiae_contig6220.14813.1 ID=prot_L-elsbetiae_contig6220.14813.1|Name=mRNA_L-elsbetiae_contig6220.14813.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=157bp
DDAHQGLAKTLDYARGLDMPIAIEPLHPMYAADRACVNTLSQALDLCDDL
GAGIGVALDVYHVWWDPDLAAQVKRAGKDRLLGFHICDWLVPTRDMLTDR
GMMGDGVIDLPGIRAMAEATGFRGLNEVEIFSAENWWKRDADEVLTEVVA
RGRDCC*
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mRNA from alignment at L-elsbetiae_contig6220:759..1229-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6220.14813.1 ID=mRNA_L-elsbetiae_contig6220.14813.1|Name=mRNA_L-elsbetiae_contig6220.14813.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=471bp|location=Sequence derived from alignment at L-elsbetiae_contig6220:759..1229- (Laminarionema elsbetiae ELsaHSoW15)
GACGACGCACATCAAGGTTTGGCAAAAACGCTCGACTATGCGCGCGGTCT GGACATGCCGATCGCCATCGAGCCTCTGCATCCCATGTACGCCGCCGACC GGGCCTGTGTGAACACCCTGTCCCAGGCACTCGATCTCTGCGACGACCTG GGCGCGGGCATTGGCGTGGCGCTGGACGTCTACCATGTCTGGTGGGATCC CGATCTGGCGGCGCAGGTGAAGCGGGCCGGTAAAGACCGCCTGCTGGGTT TTCACATCTGCGACTGGCTGGTACCGACGCGCGATATGCTGACCGACCGC GGCATGATGGGCGATGGTGTGATCGACCTGCCGGGCATCCGCGCCATGGC CGAAGCCACCGGCTTCAGGGGCTTGAATGAAGTCGAGATATTCTCCGCCG AGAATTGGTGGAAGCGAGACGCGGACGAAGTCCTGACGGAGGTCGTCGCA AGGGGAAGAGATTGTTGCTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6220:759..1229-

>mRNA_L-elsbetiae_contig6220.14813.1 ID=mRNA_L-elsbetiae_contig6220.14813.1|Name=mRNA_L-elsbetiae_contig6220.14813.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=942bp|location=Sequence derived from alignment at L-elsbetiae_contig6220:759..1229- (Laminarionema elsbetiae ELsaHSoW15)
GACGACGCACATCAAGGTTTGGCAAAAACGCTCGACTATGCGCGCGGTCT
GGACATGCCGATCGCCATCGAGCCTCTGCATCCCATGTACGCCGCCGACC
GGGCCTGTGTGAACACCCTGTCCCAGGCACTCGATCTCTGCGACGACCTG
GGCGCGGGCATTGGCGTGGCGCTGGACGTCTACCATGTCTGGTGGGATCC
CGATCTGGCGGCGCAGGTGAAGCGGGCCGGTAAAGACCGCCTGCTGGGTT
TTCACATCTGCGACTGGCTGGTACCGACGCGCGATATGCTGACCGACCGC
GGCATGATGGGCGATGGTGTGATCGACCTGCCGGGCATCCGCGCCATGGC
CGAAGCCACCGGCTTCAGGGGCTTGAATGAAGTCGAGATATTCTCCGCCG
AGAATTGGTGGAAGCGAGACGCGGACGAAGTCCTGACGGAGGTCGTCGCA
AGGGGAAGAGATTGTTGCTGAGACGACGCACATCAAGGTTTGGCAAAAAC
GCTCGACTATGCGCGCGGTCTGGACATGCCGATCGCCATCGAGCCTCTGC
ATCCCATGTACGCCGCCGACCGGGCCTGTGTGAACACCCTGTCCCAGGCA
CTCGATCTCTGCGACGACCTGGGCGCGGGCATTGGCGTGGCGCTGGACGT
CTACCATGTCTGGTGGGATCCCGATCTGGCGGCGCAGGTGAAGCGGGCCG
GTAAAGACCGCCTGCTGGGTTTTCACATCTGCGACTGGCTGGTACCGACG
CGCGATATGCTGACCGACCGCGGCATGATGGGCGATGGTGTGATCGACCT
GCCGGGCATCCGCGCCATGGCCGAAGCCACCGGCTTCAGGGGCTTGAATG
AAGTCGAGATATTCTCCGCCGAGAATTGGTGGAAGCGAGACGCGGACGAA
GTCCTGACGGAGGTCGTCGCAAGGGGAAGAGATTGTTGCTGA
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