mRNA_L-elsbetiae_contig62.14782.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig62.14782.1 vs. uniprot
Match: D8LJB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJB6_ECTSI) HSP 1 Score: 259 bits (662), Expect = 1.900e-73 Identity = 190/439 (43.28%), Postives = 235/439 (53.53%), Query Frame = 1 Query: 1045 VVSSSNPWILAELQQALLQHPTTEREGLSEERSXXXXXXXYEQRSGEVIVVRVAMPSAAERKHSVLAVARYMGVDDRLSAVDVSMLAELTGGRRSELLDVLERIQQSSSGGITLSSSXXXXXXXXXXXXSPAGGARPADSNGNSDGRGGASRESWAPLWEAMAMLSAPSVSVGAVGAXXXXXXSPPPGSVHPAELLEECAVDGETLLRLTQEGWLELSPAAPPISRTILEAPG----------------------HPPSTVTVHSATVPLDSLSRGVDRSFVGAPPLRLAAFRRLLDRRCHYRHRSWTTPSSSNSQGVGGGRGEDEGSGVQQGPEYDGGGVAHGVGSSNNSSGISSGAAGVREKYSGGLDHRGTVDAGGRGAERGDQEV--------ESALKRAGYLIEASILSREHARQWGRLSEDGGILASNWAELG 2271 ++SSSNPW+LAELQQAL Q E +GLSEE S + SGEV+VVRVA+PSA +R+ V+AVAR + + +LS DVSMLAELTGGRR+ LLD+L+R++QSSS +T++ + + G P D+ + G SRE W+PLWEAM MLS PSV VG A EGWLELSPAAPP S TILE G H +TVH+A VPL+SLSRGVDRSFVG PPLRLAA+RRL DRR S P +S G EG+ V G DGGG+ H VG +N G S AG R + G G + A +G GD L+RAG LIEA +L R+H+R+ +LSED G L++NWAELG Sbjct: 1 MISSSNPWVLAELQQAL-QQALPESDGLSEENSEKSCDR--QDSSGEVVVVRVALPSATQREQEVIAVARELELHHQLSVADVSMLAELTGGRRAGLLDILKRVKQSSSA-VTIAEACRATVDGEALALAATWGLLPRDAASGAVGEADKSREEWSPLWEAMGMLSVPSVVVGVNAA----------------------------------EGWLELSPAAPPGSGTILEDLGPHSPLAGAEHDSPSSLPLHDGLHRSPPLTVHAAIVPLESLSRGVDRSFVGVPPLRLAAYRRLFDRRS-----STALPETSPGAAKDAGHRRSEGAAVYVGIGDDGGGLQH-VGEGSN--GTSDSRAGSRPAFGGDFVGGGGIGAAVQGESTGDWNGVGLQRAGGNKELERAGCLIEAGVLGRQHSREEAKLSEDRGALSTNWAELG 393
BLAST of mRNA_L-elsbetiae_contig62.14782.1 vs. uniprot
Match: A0A6H5JLB8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLB8_9PHAE) HSP 1 Score: 65.9 bits (159), Expect = 9.940e-9 Identity = 54/154 (35.06%), Postives = 73/154 (47.40%), Query Frame = 1 Query: 730 VSTWESLVLWATLVVLDGQQLDDAAIWALERVL-------SGVVLP----------HDNNDQE-----------GLSLPAGPTARKSCNFVLEIEQP------------------ATTKGGASGERSEPGGL-CGDVVRLGWRLASLRVGSVVV 1050 VSTW+S+VLWAT VLDG+QLD A+ ALE+ L SG + P +DNND S A TA +F+L+I P A +GG + + SEPG L C D+ R GW+LA +G+V++ Sbjct: 8 VSTWDSVVLWATQAVLDGEQLDTVALSALEQALAGDPCTTSGEICPSPADASSTRSNDNNDDSPQDAQSPASDVSPSNMAASTANGRRSFLLDIGCPPSQELGEGKNATVVAEWAAAVEGGRT-DGSEPGALLCVDLARWGWKLACRGLGNVMI 160 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig62.14782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig62.14782.1 >prot_L-elsbetiae_contig62.14782.1 ID=prot_L-elsbetiae_contig62.14782.1|Name=mRNA_L-elsbetiae_contig62.14782.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=759bp MGLPRGLKPAAGVFLGLGAGYVVVALDLDSDARRHAAALRREVLIAALHRback to top mRNA from alignment at L-elsbetiae_contig62:29602..36941- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig62.14782.1 ID=mRNA_L-elsbetiae_contig62.14782.1|Name=mRNA_L-elsbetiae_contig62.14782.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7340bp|location=Sequence derived from alignment at L-elsbetiae_contig62:29602..36941- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig62:29602..36941- >mRNA_L-elsbetiae_contig62.14782.1 ID=mRNA_L-elsbetiae_contig62.14782.1|Name=mRNA_L-elsbetiae_contig62.14782.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4554bp|location=Sequence derived from alignment at L-elsbetiae_contig62:29602..36941- (Laminarionema elsbetiae ELsaHSoW15)back to top |