mRNA_L-elsbetiae_contig6147.14717.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6147.14717.1
Unique NamemRNA_L-elsbetiae_contig6147.14717.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6147.14717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6147contigL-elsbetiae_contig6147:5079..5568 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size490
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6147.14717.1prot_L-elsbetiae_contig6147.14717.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6147 5108..5434 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816673.119091-UTR-L-elsbetiae_contig6147:5078..51071622816673.119091-UTR-L-elsbetiae_contig6147:5078..5107Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6147 5079..5107 +
1691683729.544685-UTR-L-elsbetiae_contig6147:5078..51071691683729.544685-UTR-L-elsbetiae_contig6147:5078..5107Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6147 5079..5107 +
1622816673.1409998-UTR-L-elsbetiae_contig6147:5434..55681622816673.1409998-UTR-L-elsbetiae_contig6147:5434..5568Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6147 5435..5568 +
1691683729.5655313-UTR-L-elsbetiae_contig6147:5434..55681691683729.5655313-UTR-L-elsbetiae_contig6147:5434..5568Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6147 5435..5568 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816673.1294332-CDS-L-elsbetiae_contig6147:5107..54341622816673.1294332-CDS-L-elsbetiae_contig6147:5107..5434Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6147 5108..5434 +
1691683729.5555115-CDS-L-elsbetiae_contig6147:5107..54341691683729.5555115-CDS-L-elsbetiae_contig6147:5107..5434Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6147 5108..5434 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6147.14717.1

>prot_L-elsbetiae_contig6147.14717.1 ID=prot_L-elsbetiae_contig6147.14717.1|Name=mRNA_L-elsbetiae_contig6147.14717.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
MRSRSPLRQQQSVDGGGPLCCLVILSVCMHVSRYFCQVTYIHPHTETDET
FAATTVQYFHVTFLPHLPRPYTPVQQTRKGRADFVVSKRYKPETQIEMKD
TRVLSRVV*
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mRNA from alignment at L-elsbetiae_contig6147:5079..5568+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6147.14717.1 ID=mRNA_L-elsbetiae_contig6147.14717.1|Name=mRNA_L-elsbetiae_contig6147.14717.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=490bp|location=Sequence derived from alignment at L-elsbetiae_contig6147:5079..5568+ (Laminarionema elsbetiae ELsaHSoW15)
GTCTCTCATCTCTCGCAAAAAAAAAACGAATGCGATCGAGATCGCCGCTG
CGACAACAGCAGTCGGTCGATGGGGGGGGTCCATTGTGTTGTTTGGTGAT
ACTGTCAGTATGTATGCATGTATCTCGTTATTTTTGTCAAGTCACATACA
TACATCCACACACCGAAACTGACGAAACCTTCGCTGCGACAACCGTCCAA
TATTTTCACGTTACTTTTCTGCCGCATCTCCCCCGCCCATACACACCGGT
CCAACAAACCAGAAAGGGGCGGGCGGATTTCGTGGTCTCAAAAAGGTACA
AACCAGAGACACAGATAGAAATGAAAGACACGCGAGTCCTTTCCCGGGTC
GTGTAACGCATCGGACAAGAGGGGGGCCCGGGGCCCGCATCGAAAACGAT
GGCCGATCTGAGCAGCCCATCCATAGCTAGACATTCAAAGCACACACGCA
CACACTTATTTTATTCGATTTTTTTTTCAGCGGCATGGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6147:5079..5568+

>mRNA_L-elsbetiae_contig6147.14717.1 ID=mRNA_L-elsbetiae_contig6147.14717.1|Name=mRNA_L-elsbetiae_contig6147.14717.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig6147:5079..5568+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGATCGAGATCGCCGCTGCGACAACAGCAGTCGGTCGATGGGGGGGG
TCCATTGTGTTGTTTGGTGATACTGTCAGTATGTATGCATGTATCTCGTT
ATTTTTGTCAAGTCACATACATACATCCACACACCGAAACTGACGAAACC
TTCGCTGCGACAACCGTCCAATATTTTCACGTTACTTTTCTGCCGCATCT
CCCCCGCCCATACACACCGGTCCAACAAACCAGAAAGGGGCGGGCGGATT
TCGTGGTCTCAAAAAGGTACAAACCAGAGACACAGATAGAAATGAAAGAC
ACGCGAGTCCTTTCCCGGGTCGTGTAAATGCGATCGAGATCGCCGCTGCG
ACAACAGCAGTCGGTCGATGGGGGGGGTCCATTGTGTTGTTTGGTGATAC
TGTCAGTATGTATGCATGTATCTCGTTATTTTTGTCAAGTCACATACATA
CATCCACACACCGAAACTGACGAAACCTTCGCTGCGACAACCGTCCAATA
TTTTCACGTTACTTTTCTGCCGCATCTCCCCCGCCCATACACACCGGTCC
AACAAACCAGAAAGGGGCGGGCGGATTTCGTGGTCTCAAAAAGGTACAAA
CCAGAGACACAGATAGAAATGAAAGACACGCGAGTCCTTTCCCGGGTCGT
GTAA
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