mRNA_L-elsbetiae_contig6123.14686.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6123.14686.1
Unique NamemRNA_L-elsbetiae_contig6123.14686.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6123.14686.1 vs. uniprot
Match: D7FK33_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK33_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 9.180e-11
Identity = 57/154 (37.01%), Postives = 75/154 (48.70%), Query Frame = 1 
Query:    7 EFEGFSSAVNQAMKTIPDNSLVAILSTADLLMPSST--------------------DASSGQAAGDVFVEYERMQYTAAVLASRMASKTTGRSSALRREDFATLHPHQE------DSHGGTFEWSAQYDHYGHVNYRSNI-DKVDTLLVTASPS 387
            EFEGFSSA+N+AMKT   NS+VA+L T+ LL+P++                     D   G  A D+FV YER++ T   L  R    +T   +   R D        +      D+ GG      +YD YG V++ SNI DK   LLVTAS S
Sbjct:  197 EFEGFSSAINRAMKTASGNSVVAVLPTSFLLLPTTANGPSAPPTLNRKNNRGSVNNDIGGGGIASDIFVAYERLRAT--TLPPRKGLNSTISGTPSPRGDTGESDIRVDGREKCADTEGG------RYDEYGRVHHHSNIGDKGKGLLVTASLS 342
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BLAST of mRNA_L-elsbetiae_contig6123.14686.1 vs. uniprot
Match: A0A6H5JSA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSA5_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 9.360e-9
Identity = 53/142 (37.32%), Postives = 69/142 (48.59%), Query Frame = 1 
Query:   25 SAVNQAMKTIPDNSLVAILSTADLLM---------PSSTDASSGQ-----------AAGDVFVEYERMQYTAAVLASRMASKTTGRSSALRREDFATLHPHQEDSHGGTFEWSAQYDHYGHVNYRSNI-DKVDTLLVTASPS 387
            +AVN AMKT+P NS+VAIL T+ LL+         P STD   G            AA D+FV YER++ ++ V  S M    T  SS+  RE        Q    G +      YD   H+  RS   D+++ LLVTA PS
Sbjct:   25 AAVNLAMKTVPSNSIVAILPTSALLLLVRTLDSSGPISTDTEHGHSDVDSAARSEGAAIDIFVAYERLKSSSPVFPSPMTLNKTKTSSSSPRE--------QTRYFGTSVSEGVPYDECKHIRDRSGDGDEIEGLLVTALPS 158
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6123.14686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FK33_ECTSI9.180e-1137.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSA5_9PHAE9.360e-937.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6123contigL-elsbetiae_contig6123:273..1175 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.9
Seed ortholog evalue1.9e-09
Seed eggNOG ortholog2880.D7FK33
Hectar predicted targeting categoryother localisation
EggNOG OGs2EN0C@1,2SRIN@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size388
Cds size387
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816670.1983435-CDS-L-elsbetiae_contig6123:272..6311622816670.1983435-CDS-L-elsbetiae_contig6123:272..631Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6123 273..631 -
1691683727.5451024-CDS-L-elsbetiae_contig6123:272..6311691683727.5451024-CDS-L-elsbetiae_contig6123:272..631Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6123 273..631 -
1622816670.2111828-CDS-L-elsbetiae_contig6123:1147..11751622816670.2111828-CDS-L-elsbetiae_contig6123:1147..1175Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6123 1148..1175 -
1691683727.5560362-CDS-L-elsbetiae_contig6123:1147..11751691683727.5560362-CDS-L-elsbetiae_contig6123:1147..1175Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6123 1148..1175 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6123.14686.1prot_L-elsbetiae_contig6123.14686.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6123 273..1175 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6123.14686.1

>prot_L-elsbetiae_contig6123.14686.1 ID=prot_L-elsbetiae_contig6123.14686.1|Name=mRNA_L-elsbetiae_contig6123.14686.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=129bp
MPEFEGFSSAVNQAMKTIPDNSLVAILSTADLLMPSSTDASSGQAAGDVF
VEYERMQYTAAVLASRMASKTTGRSSALRREDFATLHPHQEDSHGGTFEW
SAQYDHYGHVNYRSNIDKVDTLLVTASPS
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mRNA from alignment at L-elsbetiae_contig6123:273..1175-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6123.14686.1 ID=mRNA_L-elsbetiae_contig6123.14686.1|Name=mRNA_L-elsbetiae_contig6123.14686.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=903bp|location=Sequence derived from alignment at L-elsbetiae_contig6123:273..1175- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCAGAGTTCGAAGGCTTCTCTTCCGGTAAGCTAGGTACTGGATTGCG
GATTTTTTCACGCCACTTTCACCCCTGTAGCAGGCTCCCACTTATTTTCT
TTCACAGAGGTTGTGCAGGCTTAATATCTTAAGGCAAACCACGTGGAATA
GACTGTTTTTGCGAGGCTTGTAGGTTGCAAGATATTGCGAGTGGGTCTTC
AGGTTGTTCCAGACCTGGGCCTCAGTTCAGGCATTAAAATATAGAGAATG
GTATTCCGCATTCGTTCACCACATCTACCAACATACTTGCGCTCTCCTGA
CGAGAAACACGTAGAAGGGAAGAGATCTGCATGAAAAAACGGAATAGTTA
TTCCCGTGCCGTTGCTGTGGCTCTCGCCCTTCCACTCGACCAGGAACGCA
TTGAATCGAGTAACGGATTGTCTTCCCTCTACTCTCGAGACCAGTAGTGA
TGAGTACCATGCCTTGCCAACCAATGTGTCTGACAAGTGAGCTGCTTCAT
GAGCTATAAACTACGCTGTTCCCGCCGTTGACGTTCGCGTACAGCCGTCA
ACCAAGCCATGAAGACGATACCAGACAACTCTCTCGTCGCCATTTTGTCC
ACGGCGGACCTGCTAATGCCTTCCAGCACCGACGCCAGCAGCGGGCAAGC
AGCCGGTGATGTTTTCGTTGAATACGAGCGAATGCAGTACACCGCCGCCG
TCCTCGCGTCGCGCATGGCAAGCAAGACGACAGGTCGCTCTTCTGCGCTA
CGACGGGAAGACTTCGCAACCCTACACCCTCATCAAGAGGATTCTCACGG
AGGGACATTCGAATGGAGCGCGCAATACGACCACTACGGTCATGTCAATT
ATCGAAGCAACATCGACAAAGTCGACACGTTGCTCGTCACCGCATCGCCC
TCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6123:273..1175-

>mRNA_L-elsbetiae_contig6123.14686.1 ID=mRNA_L-elsbetiae_contig6123.14686.1|Name=mRNA_L-elsbetiae_contig6123.14686.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=774bp|location=Sequence derived from alignment at L-elsbetiae_contig6123:273..1175- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCAGAGTTCGAAGGCTTCTCTTCCGATGCCAGAGTTCGAAGGCTTCT
CTTCCGCCGTCAACCAAGCCATGAAGACGATACCAGACAACTCTCTCGTC
GCCATTTTGTCCACGGCGGACCTGCTAATGCCTTCCAGCACCGACGCCAG
CAGCGGGCAAGCAGCCGGTGATGTTTTCGTTGAATACGAGCGAATGCAGT
ACACCGCCGCCGTCCTCGCGTCGCGCATGGCAAGCAAGACGACAGGTCGC
TCTTCTGCGCTACGACGGGAAGACTTCGCAACCCTACACCCTCATCAAGA
GGATTCTCACGGAGGGACATTCGAATGGAGCGCGCAATACGACCACTACG
GTCATGTCAATTATCGAAGCAACATCGACAAAGTCGACACGTTGCTCGTC
ACCGCATCGCCCTCCCCGTCAACCAAGCCATGAAGACGATACCAGACAAC
TCTCTCGTCGCCATTTTGTCCACGGCGGACCTGCTAATGCCTTCCAGCAC
CGACGCCAGCAGCGGGCAAGCAGCCGGTGATGTTTTCGTTGAATACGAGC
GAATGCAGTACACCGCCGCCGTCCTCGCGTCGCGCATGGCAAGCAAGACG
ACAGGTCGCTCTTCTGCGCTACGACGGGAAGACTTCGCAACCCTACACCC
TCATCAAGAGGATTCTCACGGAGGGACATTCGAATGGAGCGCGCAATACG
ACCACTACGGTCATGTCAATTATCGAAGCAACATCGACAAAGTCGACACG
TTGCTCGTCACCGCATCGCCCTCC
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