mRNA_L-elsbetiae_contig6121.14682.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6121.14682.1
Unique NamemRNA_L-elsbetiae_contig6121.14682.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6121.14682.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6121contigL-elsbetiae_contig6121:1411..2189 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size491
Cds size489
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816670.0075188-CDS-L-elsbetiae_contig6121:1410..17341622816670.0075188-CDS-L-elsbetiae_contig6121:1410..1734Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6121 1411..1734 -
1691683727.4513478-CDS-L-elsbetiae_contig6121:1410..17341691683727.4513478-CDS-L-elsbetiae_contig6121:1410..1734Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6121 1411..1734 -
1622816670.0222032-CDS-L-elsbetiae_contig6121:2024..21891622816670.0222032-CDS-L-elsbetiae_contig6121:2024..2189Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6121 2025..2189 -
1691683727.4629416-CDS-L-elsbetiae_contig6121:2024..21891691683727.4629416-CDS-L-elsbetiae_contig6121:2024..2189Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6121 2025..2189 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6121.14682.1prot_L-elsbetiae_contig6121.14682.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6121 1411..2189 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6121.14682.1

>prot_L-elsbetiae_contig6121.14682.1 ID=prot_L-elsbetiae_contig6121.14682.1|Name=mRNA_L-elsbetiae_contig6121.14682.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=163bp
ARGEAQAARVALGVAEEEQRVAVEELAMKHSEELSAARRVCRKITRLRGL
QDEMEARTAELDPADGKGDRGLEVPGASSHHSGAHGAEAAAVAPPVPGSE
KAVEGTSLTVDRPPRPDEQKEGLNSTAGDEAAAAQEQKEEEQEQQEHEED
VTSVSENRPLELG
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mRNA from alignment at L-elsbetiae_contig6121:1411..2189-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6121.14682.1 ID=mRNA_L-elsbetiae_contig6121.14682.1|Name=mRNA_L-elsbetiae_contig6121.14682.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=779bp|location=Sequence derived from alignment at L-elsbetiae_contig6121:1411..2189- (Laminarionema elsbetiae ELsaHSoW15)
GCGAGGGGGGAAGCACAGGCGGCGCGGGTGGCTTTGGGTGTTGCTGAGGA
GGAACAGCGCGTGGCGGTGGAAGAGCTGGCCATGAAGCACTCGGAGGAGC
TGTCGGCTGCCCGGCGCGTTTGTCGGAAGATAACCCGGCTGAGGGGGCTC
CAAGATGAGATGGAGGTATGTCATGGTGCTCGGGGTTAAGTTGCGTTCGG
GGGGGAGGAGCGCTTTTTCATGTCCGGTTTGTCTTAGCGTGTGTAAGAAC
AGCAGCATTGCGACCGATCGATGCCTTTCATTTCACCCCCCGTCGCCCCC
CCCCCGACGACATCTTCCTGCAACCTCGAGAGTCTGAACCCCTGGATGCT
GTGGACGCGAACGTCCGTCCCGTCCCTTACCGCCGCACTCACGCACGCAC
GCACGCACGCACGCACGCACGTATCCCCCTTTTTCGATCTTGCACCACCG
CTCAGGCACGCACGGCCGAGCTCGACCCAGCCGACGGGAAGGGCGACCGG
GGTTTGGAAGTGCCGGGCGCGAGCAGCCACCACTCTGGCGCTCACGGCGC
TGAAGCGGCGGCGGTTGCGCCGCCCGTACCTGGGAGCGAGAAGGCTGTCG
AGGGGACCTCGCTGACGGTAGACCGACCCCCCCGTCCTGACGAGCAGAAG
GAGGGCCTGAACTCCACCGCCGGGGACGAGGCGGCGGCGGCGCAGGAGCA
GAAGGAGGAGGAGCAGGAGCAGCAGGAGCACGAGGAAGATGTCACTAGCG
TGAGCGAGAACCGGCCTCTCGAGCTTGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6121:1411..2189-

>mRNA_L-elsbetiae_contig6121.14682.1 ID=mRNA_L-elsbetiae_contig6121.14682.1|Name=mRNA_L-elsbetiae_contig6121.14682.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=978bp|location=Sequence derived from alignment at L-elsbetiae_contig6121:1411..2189- (Laminarionema elsbetiae ELsaHSoW15)
GCGAGGGGGGAAGCACAGGCGGCGCGGGTGGCTTTGGGTGTTGCTGAGGA
GGAACAGCGCGTGGCGGTGGAAGAGCTGGCCATGAAGCACTCGGAGGAGC
TGTCGGCTGCCCGGCGCGTTTGTCGGAAGATAACCCGGCTGAGGGGGCTC
CAAGATGAGATGGAGGCGAGGGGGGAAGCACAGGCGGCGCGGGTGGCTTT
GGGTGTTGCTGAGGAGGAACAGCGCGTGGCGGTGGAAGAGCTGGCCATGA
AGCACTCGGAGGAGCTGTCGGCTGCCCGGCGCGTTTGTCGGAAGATAACC
CGGCTGAGGGGGCTCCAAGATGAGATGGAGGCACGCACGGCCGAGCTCGA
CCCAGCCGACGGGAAGGGCGACCGGGGTTTGGAAGTGCCGGGCGCGAGCA
GCCACCACTCTGGCGCTCACGGCGCTGAAGCGGCGGCGGTTGCGCCGCCC
GTACCTGGGAGCGAGAAGGCTGTCGAGGGGACCTCGCTGACGGTAGACCG
ACCCCCCCGTCCTGACGAGCAGAAGGAGGGCCTGAACTCCACCGCCGGGG
ACGAGGCGGCGGCGGCGCAGGAGCAGAAGGAGGAGGAGCAGGAGCAGCAG
GAGCACGAGGAAGATGTCACTAGCGTGAGCGAGAACCGGCCTCTCGAGCT
TGGCGCACGCACGGCCGAGCTCGACCCAGCCGACGGGAAGGGCGACCGGG
GTTTGGAAGTGCCGGGCGCGAGCAGCCACCACTCTGGCGCTCACGGCGCT
GAAGCGGCGGCGGTTGCGCCGCCCGTACCTGGGAGCGAGAAGGCTGTCGA
GGGGACCTCGCTGACGGTAGACCGACCCCCCCGTCCTGACGAGCAGAAGG
AGGGCCTGAACTCCACCGCCGGGGACGAGGCGGCGGCGGCGCAGGAGCAG
AAGGAGGAGGAGCAGGAGCAGCAGGAGCACGAGGAAGATGTCACTAGCGT
GAGCGAGAACCGGCCTCTCGAGCTTGGC
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