mRNA_L-elsbetiae_contig5986.14490.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5986.14490.1
Unique NamemRNA_L-elsbetiae_contig5986.14490.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5986.14490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5986contigL-elsbetiae_contig5986:3020..3902 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size539
Cds size537
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816649.3686252-CDS-L-elsbetiae_contig5986:3020..34071622816649.3686252-CDS-L-elsbetiae_contig5986:3020..3407Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5986 3021..3407 -
1691683711.6733437-CDS-L-elsbetiae_contig5986:3020..34071691683711.6733437-CDS-L-elsbetiae_contig5986:3020..3407Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5986 3021..3407 -
1622816649.3822923-CDS-L-elsbetiae_contig5986:3752..39021622816649.3822923-CDS-L-elsbetiae_contig5986:3752..3902Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5986 3753..3902 -
1691683711.6852636-CDS-L-elsbetiae_contig5986:3752..39021691683711.6852636-CDS-L-elsbetiae_contig5986:3752..3902Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5986 3753..3902 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5986.14490.1prot_L-elsbetiae_contig5986.14490.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5986 3021..3902 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5986.14490.1

>prot_L-elsbetiae_contig5986.14490.1 ID=prot_L-elsbetiae_contig5986.14490.1|Name=mRNA_L-elsbetiae_contig5986.14490.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=179bp
VEVEDLAREAAEVLLHALAKAGLGLGKGEGGAVGGITAGERWAASATTPD
GKHARASPRRGGRSSIHRAPCPASTAEEDTEGPLRASNLTAPTPRWGKEP
AERGDRRRPCRRQPLSSHGSVNSSADHGCHAAAACRHGSAAAAAAAAATA
AANDESACTEEARGPAGGTGRTSAHVCSR
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mRNA from alignment at L-elsbetiae_contig5986:3020..3902-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5986.14490.1 ID=mRNA_L-elsbetiae_contig5986.14490.1|Name=mRNA_L-elsbetiae_contig5986.14490.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=883bp|location=Sequence derived from alignment at L-elsbetiae_contig5986:3020..3902- (Laminarionema elsbetiae ELsaHSoW15)
GTGGAGGTCGAGGATCTGGCCAGAGAAGCTGCCGAGGTGCTTTTACACGC
GCTTGCCAAGGCCGGGCTCGGACTCGGGAAGGGCGAGGGTGGAGCGGTGG
GCGGGATAACTGCCGGAGAAAGATGGGCAGCGTCCGCCACCACCCCGGAT
GTGAGTTACTTTTGGCTTACGAGCTCTCGAGCGCCGAGCTCCTCTGCAGT
AGCATGCACCCATCGCCACCCGAGATGTGCATGCATACATTGCACCTGCG
ACAAAAGGATGTCCGAATGAGAAAATGCAGAAGATGGCAGAAACCCCGAC
CACAGCAGTTCTTCTGCGCTCCGCACGGGGTTCCAGGGTATTCTGCCCCA
AAGTCGTAGATTCTGCTGTACTCGGTGGTTGGATGTTCTGTGCGAAAAAG
GTATGTAGAACTTACATATGGTAGTGTACTTCGGTGGCTTCGTCGAACGC
GTCCGTCTCTCTTTCGATGGGTTAATGTCGCATATCTTTCCTCAGGGAAA
GCATGCGCGGGCGTCGCCTCGTCGGGGGGGGCGGAGTTCCATTCACCGAG
CCCCTTGCCCTGCTTCTACGGCGGAAGAAGACACGGAAGGGCCTCTACGC
GCCTCCAACCTCACGGCACCGACGCCGAGGTGGGGCAAAGAACCGGCAGA
ACGGGGGGATCGCCGCCGGCCATGCCGTCGGCAACCATTGTCCAGTCATG
GATCTGTCAACTCTTCTGCCGATCATGGTTGCCATGCTGCTGCCGCTTGC
CGCCACGGAAGCGCTGCTGCCGCTGCTGCTGCTGCCGCCACCGCCGCCGC
CAATGACGAAAGCGCTTGTACCGAAGAGGCGAGGGGCCCCGCGGGTGGCA
CCGGCAGGACGTCGGCCCACGTCTGCTCTCGCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5986:3020..3902-

>mRNA_L-elsbetiae_contig5986.14490.1 ID=mRNA_L-elsbetiae_contig5986.14490.1|Name=mRNA_L-elsbetiae_contig5986.14490.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1074bp|location=Sequence derived from alignment at L-elsbetiae_contig5986:3020..3902- (Laminarionema elsbetiae ELsaHSoW15)
GTGGAGGTCGAGGATCTGGCCAGAGAAGCTGCCGAGGTGCTTTTACACGC
GCTTGCCAAGGCCGGGCTCGGACTCGGGAAGGGCGAGGGTGGAGCGGTGG
GCGGGATAACTGCCGGAGAAAGATGGGCAGCGTCCGCCACCACCCCGGAT
GTGGAGGTCGAGGATCTGGCCAGAGAAGCTGCCGAGGTGCTTTTACACGC
GCTTGCCAAGGCCGGGCTCGGACTCGGGAAGGGCGAGGGTGGAGCGGTGG
GCGGGATAACTGCCGGAGAAAGATGGGCAGCGTCCGCCACCACCCCGGAT
GGAAAGCATGCGCGGGCGTCGCCTCGTCGGGGGGGGCGGAGTTCCATTCA
CCGAGCCCCTTGCCCTGCTTCTACGGCGGAAGAAGACACGGAAGGGCCTC
TACGCGCCTCCAACCTCACGGCACCGACGCCGAGGTGGGGCAAAGAACCG
GCAGAACGGGGGGATCGCCGCCGGCCATGCCGTCGGCAACCATTGTCCAG
TCATGGATCTGTCAACTCTTCTGCCGATCATGGTTGCCATGCTGCTGCCG
CTTGCCGCCACGGAAGCGCTGCTGCCGCTGCTGCTGCTGCCGCCACCGCC
GCCGCCAATGACGAAAGCGCTTGTACCGAAGAGGCGAGGGGCCCCGCGGG
TGGCACCGGCAGGACGTCGGCCCACGTCTGCTCTCGCGGAAAGCATGCGC
GGGCGTCGCCTCGTCGGGGGGGGCGGAGTTCCATTCACCGAGCCCCTTGC
CCTGCTTCTACGGCGGAAGAAGACACGGAAGGGCCTCTACGCGCCTCCAA
CCTCACGGCACCGACGCCGAGGTGGGGCAAAGAACCGGCAGAACGGGGGG
ATCGCCGCCGGCCATGCCGTCGGCAACCATTGTCCAGTCATGGATCTGTC
AACTCTTCTGCCGATCATGGTTGCCATGCTGCTGCCGCTTGCCGCCACGG
AAGCGCTGCTGCCGCTGCTGCTGCTGCCGCCACCGCCGCCGCCAATGACG
AAAGCGCTTGTACCGAAGAGGCGAGGGGCCCCGCGGGTGGCACCGGCAGG
ACGTCGGCCCACGTCTGCTCTCGC
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