mRNA_L-elsbetiae_contig5986.14491.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5986.14491.1
Unique NamemRNA_L-elsbetiae_contig5986.14491.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5986.14491.1 vs. uniprot
Match: D8LIF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIF6_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 4.710e-14
Identity = 44/61 (72.13%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:  301 KVSELTFLCEELQKRVVSLQSGEEVKASQRQVTEAFALAERQDKLLEDASARLDELKAESR 483
            KVSEL+  CEELQK VV L+SGEEV+ S+R+  EAFALAERQD+LLED SARL  LKAES+
Sbjct:   77 KVSELSLRCEELQKHVVVLKSGEEVQGSRRKAAEAFALAERQDQLLEDTSARLGHLKAESK 137
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5986.14491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LIF6_ECTSI4.710e-1472.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5986contigL-elsbetiae_contig5986:5983..9943 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size486
Cds size486
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5986.14491.1prot_L-elsbetiae_contig5986.14491.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5986 5983..9943 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816649.2350795-CDS-L-elsbetiae_contig5986:5982..60751622816649.2350795-CDS-L-elsbetiae_contig5986:5982..6075Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5986 5983..6075 -
1691683711.576401-CDS-L-elsbetiae_contig5986:5982..60751691683711.576401-CDS-L-elsbetiae_contig5986:5982..6075Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5986 5983..6075 -
1622816649.2468462-CDS-L-elsbetiae_contig5986:6522..66121622816649.2468462-CDS-L-elsbetiae_contig5986:6522..6612Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5986 6523..6612 -
1691683711.5862777-CDS-L-elsbetiae_contig5986:6522..66121691683711.5862777-CDS-L-elsbetiae_contig5986:6522..6612Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5986 6523..6612 -
1622816649.2598536-CDS-L-elsbetiae_contig5986:7274..73551622816649.2598536-CDS-L-elsbetiae_contig5986:7274..7355Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5986 7275..7355 -
1691683711.5983906-CDS-L-elsbetiae_contig5986:7274..73551691683711.5983906-CDS-L-elsbetiae_contig5986:7274..7355Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5986 7275..7355 -
1622816649.2701557-CDS-L-elsbetiae_contig5986:8436..86191622816649.2701557-CDS-L-elsbetiae_contig5986:8436..8619Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5986 8437..8619 -
1691683711.6126356-CDS-L-elsbetiae_contig5986:8436..86191691683711.6126356-CDS-L-elsbetiae_contig5986:8436..8619Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5986 8437..8619 -
1622816649.2799733-CDS-L-elsbetiae_contig5986:9904..99431622816649.2799733-CDS-L-elsbetiae_contig5986:9904..9943Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5986 9905..9943 -
1691683711.6219614-CDS-L-elsbetiae_contig5986:9904..99431691683711.6219614-CDS-L-elsbetiae_contig5986:9904..9943Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5986 9905..9943 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5986.14491.1

>prot_L-elsbetiae_contig5986.14491.1 ID=prot_L-elsbetiae_contig5986.14491.1|Name=mRNA_L-elsbetiae_contig5986.14491.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=162bp
LEADVASRAKEIQRCRDEALGLQNALSRANSRLARLDALEADGRARANEL
KELQEERRESDDNLARERDRTQHLVGALRDMEAESAVLSSREEELRHLEP
KVSELTFLCEELQKRVVSLQSGEEVKASQRQVTEAFALAERQDKLLEDAS
ARLDELKAESR*
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mRNA from alignment at L-elsbetiae_contig5986:5983..9943-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5986.14491.1 ID=mRNA_L-elsbetiae_contig5986.14491.1|Name=mRNA_L-elsbetiae_contig5986.14491.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3961bp|location=Sequence derived from alignment at L-elsbetiae_contig5986:5983..9943- (Laminarionema elsbetiae ELsaHSoW15)
CTTGAGGCAGACGTCGCATCTCGAGCCAAGGAGATCCAGGTATGTAAGTA
CATAAGACATGTCGGTCAACCATCCGTGCACTTTTGCACATCCCGCGTTC
AATTTGTTTTGGAAGGGGGACCCACGTGTGGTAAAAGAGTATGCACACAT
CAACGTGCTCGCCAATACTTGAAACAACTAGTCCCCGGCTGGTTCTTCTA
TTTGGTGCCCCCCCCCCCCGCGCCCGCGACAAAGGCGTTTTTTTTTTCCC
ACGTCCAGGGCAGGTCAGGAGTATGTACCTCTGCTGCTGATGTGTGTGTT
CTGTCGGCAGCAACTACTACTTACTCTAGGTTGGTTCGTAGAGAGGGCAC
AGACAGACTCGTTCTTGATTTAAAGATGTAAATCAGTCCAAGTGGCAATG
CATTACATACTCCCGCATGTACATGCATACGAATTCTGAAAATATTAAAA
TATTGAACATGATTACGTACATACTGTACAATACGTCGCAAGGGAAACAA
TTGTTTGTCTCGACAATTTACACTATTTTTTAGGCGAGCTCTGTTTGCCT
TGCAAGCCCCACGCGCTACGAAAAATAATATATACCGTTCAATAAATATG
TCGACGAGAGGGAAAGGGACGGCTGAACCCTTCTCGCGATAAAAATAGTA
GGCAAGCATCGCAGGCGGGGGGAGTGGGGGCCTTGGGGAAAGGAACCCTT
CTGTGTGGCCACGGTTCAGTACTCTGGCAAGATGTCCTCTTGACAGGGAG
CCCATCGAGCACTGGAAATAAATGTGAAAACAAAAAAATAGAAGTATTAT
ATATGTACATATGCACGTCGAGAAAAATTAACACCCTCGGCAGCACCGGC
AGTAGCAGCATTGTACTGTAGAAATGTTAAAAATAAGTTCTATGGTACAT
AGTCCAGGCCACAAGATTTTGCGACTCTGAAAATCAGGGCACACACAACA
GGTATCATACCGACAGAAGACGTCGGGACGATTCCGATACAGTAGTAGCA
ATTTTACTCCCCAGAGCGCGAACTTCCGCCAAGCGAAGGAGGCTTGGGTA
GACAAAGGCGTACGCTTTAGCTTTATCACCATTCCGCCGGGGGCAAACAA
AAACCAGCAATATATATACAGATTACCGGTTTTTAATTGAACTGCGGATT
TTGGTGCGAGTTTATCTCGGATGGGGAAACAGGGGCTTAGTATATGCCTA
CAACAGTCCCTCTGGAACGATTTCTTCGTACATAGACTGGACGTAGACTG
CTGACACTTGTATACATTAATTAATAACACCAGTGACAATGCCAGAGCTG
TGCCACTTCTCCTTCACCCAACAGCGTTGCCGAGACGAAGCGCTTGGGCT
ACAGAACGCCCTCTCCAGGGCGAACTCCCGCCTGGCAAGGCTGGATGCCC
TGGAGGCTGACGGCAGGGCTCGGGCGAACGAGCTTAAGGAGTTGCAGGAG
GAGAGGCGTGAGAGTGATGATAACTTGGCGAGAGAGCGGGATCGGACACA
ACATCTTGTAAGATAGATCAATACGCTGTTGTTGTTGTTGTTGTTGTTGT
TGTTTCTTTACATTAATTAGGTCGTAAAATCGAGATTGCTAATTCCAAAA
AATCCTAGCAACTCACGGCCTGTGGTCACAGAAGTGCTAGATACGTGCAC
AGATACCGTTGTTGATTGTCGTTTACTCTCGCATGTTCGCTCGTACAACC
GAAATGTAAGCGAAATCGCGGCCCGTGGTTTCAAACGTGCTGGAGCCATC
AGAGTATTATATATCGTGGGCGGCATGCGGTGCCGTATACCGGTTGCCTT
CGGGGCGATTTTCAAAGCCTCCAGTTGGTCCACAAGAGGGCGAGTGCCGG
TGCCTGCAGGGGCCCCGCGGCACGAGAAGGATATATGTATGGTCTAGTGT
ATCTCGTCGAGGCCAGTCCAAAGATCCTTTGATTGCTGGTCGGTGTTGGA
AAGATCGCTCTCCAATGCAGTCACAGATCAATTGAGCTTTGGAAATTGGT
CCAGTGCGTGTTGTATAGTAGCCGGCTAGATTGTATTTATGTAGTAAACT
ATAATGGAACGAAAAATATTTTCTTGCCGTTCGGGTATCGCACTCTCTTC
TTGGTGACCGAGAATCGAGCAAGAATTTTGAGAAACTTGGAGTGGAACAT
GCCTTGTGAAACTTGGCGGCGAGCGGCGAATGGAATGGTTGAGGTGTCTG
TTCTCTCGCCCAATCTCCGCGCGTACTTGACTCAACGGTGAATGGGTCAT
GGCGTCCTAGATATTACGAGCTTTGGATGCTGATGCTTGTCCGATGAGTT
GGATTGTAACATACTCCTAAGAAGCATCGCAACATTTGAAGCATTTTTCG
GGGCAGTTCTACCTCATGGGCAAAGAGAGCAACTATCAACAACAAGGATT
GCGTGTAATACCGCATCGGCGTAGCCATGAAAACTCCGAGGACGCTATTC
GATTGCGATGCTCGTATCAGTTTTGGGCGCCTAGCCCCCCCCCCTCCCTG
CATCGAAAATAAATACATTCAAGGCCGATTTTCCGCCGAAACGCGAGTGA
GTGTGAACAAACCGTGAATGCGTGCAAATTGTGACAAGGTCGGCGCGCTG
AGAGACATGGAAGCGGAGTCCGCGGTGCTGAGCTCTAGGGAGGAAGAGTT
GCGCCACTTGGAGCCGAAGGTACGTAACGTTTGATATTTTAACGGGAAGA
TGAGGCAGACAATAATCCTCGCCGTGTGCTGTTGCACGTGCTGCTGCTGC
TGCTGCACAGTGATTGAGCCTCAACTCTCACACCAGGTCTTCGTCCAACT
GCATTCGTTCCGATCGGTACACGCAGAAATGAACCACGACTTTTTAACCC
GGTAAAGCTGTCCAATTTGGAAGGTTTTACAGGACTAAATTTCCCCGTTT
TCGAGCCGGAACAAGATATTCAACCACTCACTGTGTACCTAAGCTTCAGG
GGAGAGCGTGTGAACACAGCTGCAGCATTAGCGCCCTCGCCCATCCTCAC
TCAGTAGCATCGGGACAAAATGGCAGCATTAGGGGTTGAAAAATGATCCA
TCCACAAGGAATAACATTTTCAGTGCCCTACAGCAGCAGTACGGTGGCGG
TGGAGGTGTTCGAAGAGGCGGCGGCCGTAGGAGTATGTGCTTGCGTGTGG
CGTTCAAAGACTGCGGTTGCTTGTTTTTAACTGGTACACGGGGCTCTGTC
CATTGACAGCAGTAAATGGAACTCAGAGTGACTCTTGTTAACTTCAAGCA
GTTGCTCTTTTTGTTTTGTCCCTTCCCCCGTTTTACTGCTGTGTTCTCAT
TCTGGCCATGATCTTATCGGCCCCCTGACAGGTCTCCGAGCTTACGTTCC
TGTGTGAGGAGCTACAGAAGCGCGTGGTGTCTCTTCAATCCGGCGAGGAG
GTGAAGGCATCCCAGCGGCAGGTGAAGGAGTTGCTGCTGTTGTTGTTTGT
TGTTGTTGTTGTTGTTGTTGTTATCCCAGCTGGTTACGTGAACTTATGCC
ACTAAATAGACTATATGGCTGAAGTACGTCGGGTAACTCATGTCTACCCA
AGATCTTCGCAAGACGAGAGTTTAGGCGTTGGACGAGGTCATTCATTGCA
TCGGCCTATTCCCGGCGGTCTACGTGGACATCGTACGTTTATTCCGAAGG
CCCATCGGTTGGATGCTCCGTTTCTAGCCTAGGCTAGAGATCCGCGCAGG
CTACCGTGCAGTCTTTAGTCCCGTTGGTTCTACTCTGATCCGCGTATGTG
TACGAAGTATTACCGTACAAATTGTCCATTGGTTCTACTTTAACAATTCG
CATGGGTTTACCGTATATGTAGAAGTATACAGCAGTCAGACCATTGGGTT
ACTTTCTGTCGGTTTCAGGTCACGGAGGCGTTCGCTCTGGCGGAGAGGCA
GGACAAGCTCTTGGAGGACGCGTCCGCTAGGCTTGACGAGCTCAAGGCCG
AATCGAGGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5986:5983..9943-

>mRNA_L-elsbetiae_contig5986.14491.1 ID=mRNA_L-elsbetiae_contig5986.14491.1|Name=mRNA_L-elsbetiae_contig5986.14491.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=972bp|location=Sequence derived from alignment at L-elsbetiae_contig5986:5983..9943- (Laminarionema elsbetiae ELsaHSoW15)
CTTGAGGCAGACGTCGCATCTCGAGCCAAGGAGATCCAGCTTGAGGCAGA
CGTCGCATCTCGAGCCAAGGAGATCCAGCGTTGCCGAGACGAAGCGCTTG
GGCTACAGAACGCCCTCTCCAGGGCGAACTCCCGCCTGGCAAGGCTGGAT
GCCCTGGAGGCTGACGGCAGGGCTCGGGCGAACGAGCTTAAGGAGTTGCA
GGAGGAGAGGCGTGAGAGTGATGATAACTTGGCGAGAGAGCGGGATCGGA
CACAACATCTTCGTTGCCGAGACGAAGCGCTTGGGCTACAGAACGCCCTC
TCCAGGGCGAACTCCCGCCTGGCAAGGCTGGATGCCCTGGAGGCTGACGG
CAGGGCTCGGGCGAACGAGCTTAAGGAGTTGCAGGAGGAGAGGCGTGAGA
GTGATGATAACTTGGCGAGAGAGCGGGATCGGACACAACATCTTGTCGGC
GCGCTGAGAGACATGGAAGCGGAGTCCGCGGTGCTGAGCTCTAGGGAGGA
AGAGTTGCGCCACTTGGAGCCGAAGGTCGGCGCGCTGAGAGACATGGAAG
CGGAGTCCGCGGTGCTGAGCTCTAGGGAGGAAGAGTTGCGCCACTTGGAG
CCGAAGGTCTCCGAGCTTACGTTCCTGTGTGAGGAGCTACAGAAGCGCGT
GGTGTCTCTTCAATCCGGCGAGGAGGTGAAGGCATCCCAGCGGCAGGTCT
CCGAGCTTACGTTCCTGTGTGAGGAGCTACAGAAGCGCGTGGTGTCTCTT
CAATCCGGCGAGGAGGTGAAGGCATCCCAGCGGCAGGTCACGGAGGCGTT
CGCTCTGGCGGAGAGGCAGGACAAGCTCTTGGAGGACGCGTCCGCTAGGC
TTGACGAGCTCAAGGCCGAATCGAGGTAAGTCACGGAGGCGTTCGCTCTG
GCGGAGAGGCAGGACAAGCTCTTGGAGGACGCGTCCGCTAGGCTTGACGA
GCTCAAGGCCGAATCGAGGTAA
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