mRNA_L-elsbetiae_contig597.14466.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig597.14466.1 vs. uniprot
Match: A0A6H5J997_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J997_9PHAE) HSP 1 Score: 325 bits (834), Expect = 9.980e-89 Identity = 345/812 (42.49%), Postives = 390/812 (48.03%), Query Frame = 3 Query: 3 VAFQARGLDMNAGKPKA-SKPGGRRRAAGTVAAAAGVRFQGTIIEEDTWEAASKAARKKRAPKETRVR-HSYVVRKPAAAPFWLSPGVQFGRSNCRGWFPTRQDWSAQGIPQCVYVPLEPSTEDRVEAMRSGHERAVGLTMEEDEERLMRIAIRESAAESRRAYEKKYGTEAXXXXXXXXXXXXXXXXLAERESLERDEEKQLMEVIKASLDISLGAGEKDDRDVIAAIETSKRENSANGHGGEEEQEEDPEILKAIAESRRQHEAMQELLRAHGALPRAPDPAVAADASGVLTPEERTDQYATPGRGATLPVAGETANMAASFANQPNPVVSAXXXXXXXXXXXXXXXXCXXXXQFAPPQTYAQERRTELLPTASESFPAPLTAAATPAGPTAERAHAGPVVGQVQAVPQDYRQGXXXXXXXXHRVEDNSGGMGGVH-ATPXXXXXX----------------VYLPH-TSTAG--EMEPPPGLQPPVAPATTAPGATPNPLTFGPGAGSSSRDEKSMQQTVMRTMQTQFNADRLPSGGXXXXXXDGET---GMMVNPATHASPLWEGGXXXXXXXXXXHATARVSPLASVTKTMPPQSLNYAGGAEPTTCASETPLKGGPQQSTPYHHQRVGAP-----------------------------QLAGWAVR------TPAHGAAAAPVAAKGKPKPAWGAAGLASDGLTAEERELREVLEASREAEEAXXXXXAAEEXXXXXXXXXXXXXXXXARQRQEKEARVAVELALKRSIMAASAVTPYGTGYLGGNGN----DGSLRPSPAQPPP 2246 VAFQARGLD+N+ K A +KP GRR WEAAS RK+R KETRV HSYVVRK AAAPFWLSPGVQFGRSNCRGWFPTRQDWSA+GIPQC+YVPLEPSTEDRVEAMR GHER VGLT+EEDEERLMRIAIRESAAESRRAYEKKYGTEA +AE ESL+RDEEKQLMEVIKASL SLGAGEKDDRDVIAA+E SKR++ N E+ ED ++LK + ESRRQHEAMQEL R HG + P P ++ A ETA A S+A + XXXXXXXXXXXXXXX XXXX +P A + + L AA PAG G +QA Q Y QG + S GM H ATP XXXX VY PH T G ME TT PG P +S +Q Q R G X T G+ +P+ XXXXXXXX A +P A + A + C TPL QQ P Q GA QLAGWAVR P G P A K AWGAAG ASDGL+AEEREL VLEASR EE R+R+E E+++A+++ALK S+M ASA G Y GN + P QPPP Sbjct: 920 VAFQARGLDLNSNKASALAKPRGRRHGXXXXX----XXXXXXXXXXXXWEAAS---RKRRGQKETRVAPHSYVVRKTAAAPFWLSPGVQFGRSNCRGWFPTRQDWSARGIPQCIYVPLEPSTEDRVEAMRLGHERVVGLTLEEDEERLMRIAIRESAAESRRAYEKKYGTEAEREKRREAHAKARVKAMAECESLQRDEEKQLMEVIKASLVESLGAGEKDDRDVIAALEASKRDSEYNAR----EEGEDADVLKVMVESRRQHEAMQELRRVHGDMSSVP-------------PHSQS--------------AAETATTAVSYAGDQT---NHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVPMAPDWLVSELPVAA-PAG----------AAGFMQAPRQGY-QG-----------QAYSAGMNQGHTATPPTXXXXXXXXXXXXXXXXXXXAVYAPHATGDCGGVHME------------TTHPGLEPT---------NSQHAYSVQEQQXXXXXQPMRIPARFDDGNLAMPPXXXATAPVGVPTSPSVQGPXXXXXXXXXXXXXXTLDHRAEATPCALAGR-------QPASSQQTILCHGTTPLLTAQQQPWP---QGSGAELSGYMMMNGXXXXXXXXXXXXXXXXXXXAQLAGWAVRGSATCGAPGGGGVLPP--APPVRKAAWGAAGQASDGLSAEERELEAVLEASRIEEET--------------------------RRREEAESKIAMDMALKMSMMEASAAPSGGERYGHDRGNYYQQPAATTGYPTQPPP 1608
BLAST of mRNA_L-elsbetiae_contig597.14466.1 vs. uniprot
Match: D7FRG7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRG7_ECTSI) HSP 1 Score: 262 bits (670), Expect = 6.220e-72 Identity = 164/213 (77.00%), Postives = 177/213 (83.10%), Query Frame = 3 Query: 3 VAFQARGLDMNAGKPKA-SKPGGRRRAAGTVAAAAGVRFQGTIIEE--DTWEAASKAARKKRAPKETRVR-HSYVVRKPAAAPFWLSPGVQFGRSNCRGWFPTRQDWSAQGIPQCVYVPLEPSTEDRVEAMRSGHERAVGLTMEEDEERLMRIAIRESAAESRRAYEKKYGTEAXXXXXXXXXXXXXXXXLAERESLERDEEKQLMEVIKASL 629 VAFQARGL++N+ K A +KP GRR+A T+ EE + WEAAS RK+R KETRV HSYVVRK AAAPFWLSPGVQFGRSNCRGWFPTRQDWSA+GIPQC+YVPLEPSTEDRVEAMR GHER VGLT+EEDEERLMRIAIRESAAESRRAYEKKYGTEA XXXXXXXXXXXXX +AERESL+RDEEKQLMEVIKASL Sbjct: 18 VAFQARGLELNSNKASARAKPRGRRKAXXXX-----XXXLRTVKEEKEEAWEAAS---RKRRGQKETRVAPHSYVVRKTAAAPFWLSPGVQFGRSNCRGWFPTRQDWSARGIPQCIYVPLEPSTEDRVEAMRLGHERVVGLTLEEDEERLMRIAIRESAAESRRAYEKKYGTEAERXXXXXXXXXXXXXAMAERESLQRDEEKQLMEVIKASL 222 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig597.14466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig597.14466.1 >prot_L-elsbetiae_contig597.14466.1 ID=prot_L-elsbetiae_contig597.14466.1|Name=mRNA_L-elsbetiae_contig597.14466.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=972bp MNAGKPKASKPGGRRRAAGTVAAAAGVRFQGTIIEEDTWEAASKAARKKRback to top mRNA from alignment at L-elsbetiae_contig597:1609..12072+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig597.14466.1 ID=mRNA_L-elsbetiae_contig597.14466.1|Name=mRNA_L-elsbetiae_contig597.14466.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=10464bp|location=Sequence derived from alignment at L-elsbetiae_contig597:1609..12072+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig597:1609..12072+ >mRNA_L-elsbetiae_contig597.14466.1 ID=mRNA_L-elsbetiae_contig597.14466.1|Name=mRNA_L-elsbetiae_contig597.14466.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=5832bp|location=Sequence derived from alignment at L-elsbetiae_contig597:1609..12072+ (Laminarionema elsbetiae ELsaHSoW15)back to top |