mRNA_L-elsbetiae_contig5965.14460.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5965.14460.1
Unique NamemRNA_L-elsbetiae_contig5965.14460.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5965.14460.1 vs. uniprot
Match: D7FUN7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUN7_ECTSI)

HSP 1 Score: 229 bits (585), Expect = 8.060e-67
Identity = 117/159 (73.58%), Postives = 123/159 (77.36%), Query Frame = 1 
Query:    1 QVELSVKHAFGIPVARDSKMGDIRQRGMRACLFYDTGREVDKDTGEASSEYNEHFLCNTYKTLAIQHPQKEEQWVFPDSSEGERKFLVRTDFGSGXXXXXXXXXXXXXXXXXXXXXXGDDTAPSPS-SRGDRRKLFLLVELTCVVQTAKDRAADPYGDG 474
            QVELSVKHAFGIPVARDSKMGDIRQRGMRACLFYD GR+VD+DTGEASSEYNEHFLCNTYKTLAIQHPQKEEQW+FPDSSEGERKFLVRTDFGS                         DT PS + SRGDR++LFLLVELTC VQTAKD A     DG
Sbjct: 1336 QVELSVKHAFGIPVARDSKMGDIRQRGMRACLFYDAGRDVDRDTGEASSEYNEHFLCNTYKTLAIQHPQKEEQWLFPDSSEGERKFLVRTDFGSSSGNSSSSRQGTR------------DTNPSSAHSRGDRKRLFLLVELTCTVQTAKDEATPAKMDG 1482
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5965.14460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUN7_ECTSI8.060e-6773.58Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5965contigL-elsbetiae_contig5965:6102..7382 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score228.8
Seed ortholog evalue1.8e-57
Seed eggNOG ortholog2880.D7FUN7
Preferred nameMLC2
KEGG koko:K02183
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
Hectar predicted targeting categoryother localisation
GOsGO:0000142,GO:0000910,GO:0000916,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005826,GO:0005856,GO:0005933,GO:0005935,GO:0005938,GO:0006996,GO:0007010,GO:0007049,GO:0008092,GO:0008150,GO:0009987,GO:0015629,GO:0016043,GO:0016459,GO:0016460,GO:0017022,GO:0022402,GO:0030029,GO:0030036,GO:0030427,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0031032,GO:0032153,GO:0032155,GO:0032506,GO:0032991,GO:0036213,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0044837,GO:0045159,GO:0051301,GO:0061640,GO:0070938,GO:0071840,GO:0071944,GO:0099568,GO:0110085
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0027@2759
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036,ko04131,ko04147
Exons3
Model size474
Cds size474
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5965.14460.1prot_L-elsbetiae_contig5965.14460.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5965 6102..7382 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816646.5642514-CDS-L-elsbetiae_contig5965:6101..63561622816646.5642514-CDS-L-elsbetiae_contig5965:6101..6356Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5965 6102..6356 -
1691683709.552218-CDS-L-elsbetiae_contig5965:6101..63561691683709.552218-CDS-L-elsbetiae_contig5965:6101..6356Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5965 6102..6356 -
1622816646.5748441-CDS-L-elsbetiae_contig5965:6621..67151622816646.5748441-CDS-L-elsbetiae_contig5965:6621..6715Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5965 6622..6715 -
1691683709.5670094-CDS-L-elsbetiae_contig5965:6621..67151691683709.5670094-CDS-L-elsbetiae_contig5965:6621..6715Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5965 6622..6715 -
1622816646.5849028-CDS-L-elsbetiae_contig5965:7257..73821622816646.5849028-CDS-L-elsbetiae_contig5965:7257..7382Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5965 7258..7382 -
1691683709.576615-CDS-L-elsbetiae_contig5965:7257..73821691683709.576615-CDS-L-elsbetiae_contig5965:7257..7382Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5965 7258..7382 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5965.14460.1

>prot_L-elsbetiae_contig5965.14460.1 ID=prot_L-elsbetiae_contig5965.14460.1|Name=mRNA_L-elsbetiae_contig5965.14460.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=158bp
QVELSVKHAFGIPVARDSKMGDIRQRGMRACLFYDTGREVDKDTGEASSE
YNEHFLCNTYKTLAIQHPQKEEQWVFPDSSEGERKFLVRTDFGSGGGGSD
GRHGRRRSSSRNQQQGAGDDTAPSPSSRGDRRKLFLLVELTCVVQTAKDR
AADPYGDG
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mRNA from alignment at L-elsbetiae_contig5965:6102..7382-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5965.14460.1 ID=mRNA_L-elsbetiae_contig5965.14460.1|Name=mRNA_L-elsbetiae_contig5965.14460.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1281bp|location=Sequence derived from alignment at L-elsbetiae_contig5965:6102..7382- (Laminarionema elsbetiae ELsaHSoW15)
CAGGTCGAGCTGTCCGTGAAGCATGCCTTCGGTATCCCGGTGGCGAGAGA
CTCTAAGATGGGGGACATCCGCCAGCGAGGGATGCGCGCATGCCTCTTCT
ACGACACCGGGAGGGAGGTCGATAAGTAAGTTACACTTCGAGAGTGTATG
GCACATATCCCCAACAGCTCAGGAGCATATCCCATTTACATACAAGTCTA
GCCAGTCGTAGTGGAGGAAGGGGGCCAGTGGGGCAGACGACGAATACATA
AGCCAACAATGGGAAGAAGAAAAAAAATGTTAAATGTTTGTTATCTCAAG
GCGCTCTTCATAGTGTTTGCCGCTGTCCATCTTCCTGTGCTAGTAAGGAT
GGGGTCCAAATGGACGTCACCTGTGCACTCAGACAAGATATTGTACATGC
CACAAAAGCTTTTGGGTCACCATATATCGCCGAGCATCTGTCGGCATATG
TATGTACGAAACTAGCCGTGTTGGCGACCAACTCAACAACATCGCTCGAA
TGTTCTTATCCAAGATAAGCTTTTTGTCGAGACAAAGCTTGCTGGAAGGT
AGTCTAGGCTGGGCTATATGAGAAGTAACCCGCACCCCGCTGAACCAATC
TGGAAGCAATAAAGCTTCTAACACCGACGCTTTACTGCAACTGTCTCCTG
AAACTGCTCGCCGGCAGGGACACCGGCGAGGCCAGCTCGGAGTACAACGA
GCATTTCTTGTGCAACACATACAAGACGCTGGCGATCCAGCACCCTCAAA
AAGAGGAGCAGGTGCGACTATCGTATTAGTAGCAAGAAAGAAAAATAACA
TTCGTTTACGCCGTACACCGCATGCCGACTGATGTGTTCACCTCTGTCTG
GTCAAAAGCCCGAAAACAAGGATCAGCATCCACGCAAGGATGCGCTTGCT
CTACACAGACCACTTGATATACTGATACGCTGGCGGGCCTCTATCTACAC
GACATCGACCCCCCCCCCCGTCCCCCCCCCCCCCCCCCCCGTGGTTCCAA
TACCACCCCCACCTTGTGCACAAAAGTGGGTGTTCCCAGATTCCTCGGAA
GGGGAGAGGAAGTTCCTTGTTCGTACGGACTTTGGGAGTGGCGGCGGCGG
CAGCGACGGCCGACATGGCCGCCGCCGCAGCAGCAGTCGAAATCAGCAAC
AGGGGGCGGGAGACGACACCGCCCCCTCGCCGTCCTCCCGCGGCGACAGG
AGAAAGCTCTTCCTGCTGGTGGAGCTCACGTGCGTGGTGCAGACCGCCAA
GGACCGGGCGGCGGACCCGTACGGCGACGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5965:6102..7382-

>mRNA_L-elsbetiae_contig5965.14460.1 ID=mRNA_L-elsbetiae_contig5965.14460.1|Name=mRNA_L-elsbetiae_contig5965.14460.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=948bp|location=Sequence derived from alignment at L-elsbetiae_contig5965:6102..7382- (Laminarionema elsbetiae ELsaHSoW15)
CAGGTCGAGCTGTCCGTGAAGCATGCCTTCGGTATCCCGGTGGCGAGAGA
CTCTAAGATGGGGGACATCCGCCAGCGAGGGATGCGCGCATGCCTCTTCT
ACGACACCGGGAGGGAGGTCGATAACAGGTCGAGCTGTCCGTGAAGCATG
CCTTCGGTATCCCGGTGGCGAGAGACTCTAAGATGGGGGACATCCGCCAG
CGAGGGATGCGCGCATGCCTCTTCTACGACACCGGGAGGGAGGTCGATAA
GGACACCGGCGAGGCCAGCTCGGAGTACAACGAGCATTTCTTGTGCAACA
CATACAAGACGCTGGCGATCCAGCACCCTCAAAAAGAGGAGCAGGGACAC
CGGCGAGGCCAGCTCGGAGTACAACGAGCATTTCTTGTGCAACACATACA
AGACGCTGGCGATCCAGCACCCTCAAAAAGAGGAGCAGTGGGTGTTCCCA
GATTCCTCGGAAGGGGAGAGGAAGTTCCTTGTTCGTACGGACTTTGGGAG
TGGCGGCGGCGGCAGCGACGGCCGACATGGCCGCCGCCGCAGCAGCAGTC
GAAATCAGCAACAGGGGGCGGGAGACGACACCGCCCCCTCGCCGTCCTCC
CGCGGCGACAGGAGAAAGCTCTTCCTGCTGGTGGAGCTCACGTGCGTGGT
GCAGACCGCCAAGGACCGGGCGGCGGACCCGTACGGCGACGGCTGGGTGT
TCCCAGATTCCTCGGAAGGGGAGAGGAAGTTCCTTGTTCGTACGGACTTT
GGGAGTGGCGGCGGCGGCAGCGACGGCCGACATGGCCGCCGCCGCAGCAG
CAGTCGAAATCAGCAACAGGGGGCGGGAGACGACACCGCCCCCTCGCCGT
CCTCCCGCGGCGACAGGAGAAAGCTCTTCCTGCTGGTGGAGCTCACGTGC
GTGGTGCAGACCGCCAAGGACCGGGCGGCGGACCCGTACGGCGACGGC
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