mRNA_L-elsbetiae_contig5938.14422.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5938.14422.1
Unique NamemRNA_L-elsbetiae_contig5938.14422.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5938.14422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5938contigL-elsbetiae_contig5938:2636..3463 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size247
Cds size246
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5938.14422.1prot_L-elsbetiae_contig5938.14422.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5938 2636..3463 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816642.792127-CDS-L-elsbetiae_contig5938:2635..27061622816642.792127-CDS-L-elsbetiae_contig5938:2635..2706Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5938 2636..2706 +
1691683706.8430605-CDS-L-elsbetiae_contig5938:2635..27061691683706.8430605-CDS-L-elsbetiae_contig5938:2635..2706Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5938 2636..2706 +
1622816642.8070428-CDS-L-elsbetiae_contig5938:2995..30941622816642.8070428-CDS-L-elsbetiae_contig5938:2995..3094Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5938 2996..3094 +
1691683706.852698-CDS-L-elsbetiae_contig5938:2995..30941691683706.852698-CDS-L-elsbetiae_contig5938:2995..3094Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5938 2996..3094 +
1622816642.8244464-CDS-L-elsbetiae_contig5938:3387..34631622816642.8244464-CDS-L-elsbetiae_contig5938:3387..3463Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5938 3388..3463 +
1691683706.8624067-CDS-L-elsbetiae_contig5938:3387..34631691683706.8624067-CDS-L-elsbetiae_contig5938:3387..3463Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5938 3388..3463 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5938.14422.1

>prot_L-elsbetiae_contig5938.14422.1 ID=prot_L-elsbetiae_contig5938.14422.1|Name=mRNA_L-elsbetiae_contig5938.14422.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=82bp
VSTPACFNPKSDDYRCQLARGASINLSNCGLTDSHVDLIRVCLKTATDNN
LDKIATLNLGDNHLKTLPEGLFYSLTHLRTL*
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mRNA from alignment at L-elsbetiae_contig5938:2636..3463+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5938.14422.1 ID=mRNA_L-elsbetiae_contig5938.14422.1|Name=mRNA_L-elsbetiae_contig5938.14422.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=828bp|location=Sequence derived from alignment at L-elsbetiae_contig5938:2636..3463+ (Laminarionema elsbetiae ELsaHSoW15)
GTGTCTACTCCGGCCTGCTTCAACCCCAAGAGCGACGACTACCGCTGCCA
GCTGGCCCGCGGAGCCTCGATGTGAGAACGACATTGTCACGAAAACGTGG
CATGTGCATCCACCAAACACCGTCCGCGAATGTTACATCGGCTGGATAGT
GTCAAAGAGTCTACAACGCTACTGTTGAAGAAAGGCAAAGCTCCCACGCT
TCCCGATTGTTCGTGCTGTCTGATATCGTGAGCTGTTTATCACATGAAAA
ATGTTGGCGAAGTTGTCCATTCGCTACACTGCAAAAATTGGCTTACACCC
CCTTTTCTCTTGAACTGATCCTCTGGGTGCCCCAACGTGTCCTCGTGTGA
CCTGCCACAGCAACCTGTCGAACTGCGGCCTAACGGACAGCCATGTAGAC
CTTATCAGGGTGTGCCTCAAAACAGCTACGGACAACAACCTGGACAAGAT
TGCGACTCTGTGAGTACAAAAGGATGCATCGGCTCCGCCACGTGGTCGTC
CACATTCCAGTTTTCACACCGCGCGGGGATGACTGGGGTTGCGCGGTTAA
AGGGCATCCAAACGTTCAGCCATTTAATCAATTGCGTTGCTCAATTGTGC
TGCGTTTGCCACCGCGCTCGCACCTAGGGCCATATGGCCTATCTATGTAG
AGACCTTCGGACTGGCATGTATTTTCATAAAATGTGGATGGCATATTTTC
TGCTTCACCCCTTGCCCGGCCCGGCATGTCTCGTTCGGCGATAACTCCGA
AGTAACCTGGGGGACAACCACCTGAAGACGCTACCTGAAGGGCTATTCTA
TTCTCTCACCCATCTTCGGACGCTGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5938:2636..3463+

>mRNA_L-elsbetiae_contig5938.14422.1 ID=mRNA_L-elsbetiae_contig5938.14422.1|Name=mRNA_L-elsbetiae_contig5938.14422.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=492bp|location=Sequence derived from alignment at L-elsbetiae_contig5938:2636..3463+ (Laminarionema elsbetiae ELsaHSoW15)
GTGTCTACTCCGGCCTGCTTCAACCCCAAGAGCGACGACTACCGCTGCCA
GCTGGCCCGCGGAGCCTCGATGTGTCTACTCCGGCCTGCTTCAACCCCAA
GAGCGACGACTACCGCTGCCAGCTGGCCCGCGGAGCCTCGATCAACCTGT
CGAACTGCGGCCTAACGGACAGCCATGTAGACCTTATCAGGGTGTGCCTC
AAAACAGCTACGGACAACAACCTGGACAAGATTGCGACTCTCAACCTGTC
GAACTGCGGCCTAACGGACAGCCATGTAGACCTTATCAGGGTGTGCCTCA
AAACAGCTACGGACAACAACCTGGACAAGATTGCGACTCTTAACCTGGGG
GACAACCACCTGAAGACGCTACCTGAAGGGCTATTCTATTCTCTCACCCA
TCTTCGGACGCTGTAATAACCTGGGGGACAACCACCTGAAGACGCTACCT
GAAGGGCTATTCTATTCTCTCACCCATCTTCGGACGCTGTAA
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