mRNA_L-elsbetiae_contig5929.14404.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5929.14404.1
Unique NamemRNA_L-elsbetiae_contig5929.14404.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5929.14404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5929contigL-elsbetiae_contig5929:3627..4144 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size518
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5929.14404.1prot_L-elsbetiae_contig5929.14404.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5929 3829..4140 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816641.2733023-UTR-L-elsbetiae_contig5929:3626..38281622816641.2733023-UTR-L-elsbetiae_contig5929:3626..3828Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5929 3627..3828 +
1691683705.8233538-UTR-L-elsbetiae_contig5929:3626..38281691683705.8233538-UTR-L-elsbetiae_contig5929:3626..3828Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5929 3627..3828 +
1622816641.2955556-UTR-L-elsbetiae_contig5929:4140..41441622816641.2955556-UTR-L-elsbetiae_contig5929:4140..4144Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5929 4141..4144 +
1691683705.8434384-UTR-L-elsbetiae_contig5929:4140..41441691683705.8434384-UTR-L-elsbetiae_contig5929:4140..4144Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5929 4141..4144 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816641.2840397-CDS-L-elsbetiae_contig5929:3828..41401622816641.2840397-CDS-L-elsbetiae_contig5929:3828..4140Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5929 3829..4140 +
1691683705.8336737-CDS-L-elsbetiae_contig5929:3828..41401691683705.8336737-CDS-L-elsbetiae_contig5929:3828..4140Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5929 3829..4140 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5929.14404.1

>prot_L-elsbetiae_contig5929.14404.1 ID=prot_L-elsbetiae_contig5929.14404.1|Name=mRNA_L-elsbetiae_contig5929.14404.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
MAQKPGCLFVVWCLHITNRSDLSRYVSSWPIGTHRAVSSPKTLPSRRQTK
KRSIYVRANGKRRDSLRMPTGLQRVFGVVVWPVRRLERPNHPNLPLRQRR
SHK*
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mRNA from alignment at L-elsbetiae_contig5929:3627..4144+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5929.14404.1 ID=mRNA_L-elsbetiae_contig5929.14404.1|Name=mRNA_L-elsbetiae_contig5929.14404.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=518bp|location=Sequence derived from alignment at L-elsbetiae_contig5929:3627..4144+ (Laminarionema elsbetiae ELsaHSoW15)
CCCACAAGGAGCTGAAAAAAAAAAACTTGCTGGCGAGAGAAGCACATCAC
CGCAGAGCCACATCCCGAGACGAAGAAGTATAACCAGCCCCCCAACATTA
TTGCACCCGAAAACGTGTCGCCGAGACCCCCAAGACGCAACCAACGACCT
CTGCCTGCCATTTCTTTTGTCGGTGTATGTACATCCGTACACACGCGCAT
ACATGGCTCAAAAGCCCGGTTGTTTGTTCGTTGTTTGGTGTCTTCACATT
ACAAACCGTTCCGATCTCTCTAGATATGTATCCAGTTGGCCGATAGGAAC
TCACCGCGCCGTTTCGTCACCAAAAACGCTACCGTCTAGACGACAAACAA
AAAAACGCTCCATCTACGTACGGGCGAATGGAAAACGCCGCGATTCACTC
AGGATGCCGACGGGACTTCAGCGGGTATTTGGCGTCGTCGTCTGGCCGGT
GCGGCGGCTGGAGCGTCCCAACCATCCCAACCTTCCGCTGCGGCAAAGGA
GAAGCCATAAATGAAACC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5929:3627..4144+

>mRNA_L-elsbetiae_contig5929.14404.1 ID=mRNA_L-elsbetiae_contig5929.14404.1|Name=mRNA_L-elsbetiae_contig5929.14404.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig5929:3627..4144+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTCAAAAGCCCGGTTGTTTGTTCGTTGTTTGGTGTCTTCACATTAC
AAACCGTTCCGATCTCTCTAGATATGTATCCAGTTGGCCGATAGGAACTC
ACCGCGCCGTTTCGTCACCAAAAACGCTACCGTCTAGACGACAAACAAAA
AAACGCTCCATCTACGTACGGGCGAATGGAAAACGCCGCGATTCACTCAG
GATGCCGACGGGACTTCAGCGGGTATTTGGCGTCGTCGTCTGGCCGGTGC
GGCGGCTGGAGCGTCCCAACCATCCCAACCTTCCGCTGCGGCAAAGGAGA
AGCCATAAATGAATGGCTCAAAAGCCCGGTTGTTTGTTCGTTGTTTGGTG
TCTTCACATTACAAACCGTTCCGATCTCTCTAGATATGTATCCAGTTGGC
CGATAGGAACTCACCGCGCCGTTTCGTCACCAAAAACGCTACCGTCTAGA
CGACAAACAAAAAAACGCTCCATCTACGTACGGGCGAATGGAAAACGCCG
CGATTCACTCAGGATGCCGACGGGACTTCAGCGGGTATTTGGCGTCGTCG
TCTGGCCGGTGCGGCGGCTGGAGCGTCCCAACCATCCCAACCTTCCGCTG
CGGCAAAGGAGAAGCCATAAATGA
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