mRNA_L-elsbetiae_contig101.143.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig101.143.1
Unique NamemRNA_L-elsbetiae_contig101.143.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig101.143.1 vs. uniprot
Match: B5LWE3_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWE3_9PHYC)

HSP 1 Score: 163 bits (413), Expect = 2.590e-45
Identity = 108/331 (32.63%), Postives = 163/331 (49.24%), Query Frame = 1 
Query:    7 VDAYIKDITNHSYQICGKLFSGDFTQIVKQNHDGTDLSLNHSFYSVDDDGVVKQLGGLSFSENVGGSVSLNLNVTDPVSGQSKSVLALSPSGVSVAGGIDVVGGGSTNFETSTINVADYDITLGSGAMTPSDLNGGGIVLGTVESGTKTIRFYDDIGSWSSNVGFNVEAGNRLTVNTDSVVLDETGLTISDIILSQNGLSIGNKVELNSNSLTIGDTNPVVLDAAGLTVGSTLSLSTANGLQAGDISLDKNNGLIIGTGSEALALDDDMSLNLGEDVLLNHDGLYFHNDNSAIYMGSSKEWKISLDPTSRNLKFEFFESSSTSYVVKMELK 999
            ++AY+ D++ H+ Q  GKL+ GDF QIVKQN DG  +++ H FY++D+DG+V+++G L FSE+     S+NL+V++  SG+  SVL +S SGV + G +DV  GG+T+F T++  V+D D+TLG  +   SDL GGG+VLG  + G KT  + D + SW SN+   V A                                                     DA                                      +A+D   SL+ G        GL+  + ++ IYMGS  +WKIS+D  S N+KFE +++ +++YV+KMELK
Sbjct:    1 MEAYVTDVSEHASQTTGKLYCGDFAQIVKQNTDGEGVAVEHGFYTIDEDGIVRKMGSLLFSES-----SVNLSVSNSTSGEQVSVLQVSESGVVINGAMDV-SGGTTSFTTASFEVSDIDLTLGYDSTDVSDLEGGGLVLGNDDVGKKTFTYSDLVSSWCSNISLRVAA-----------------------------------------------------DAE-------------------------------------VAIDSLASLSAG--------GLHLKDSSAGIYMGSGSDWKISVDADSNNMKFEHYDTETSAYVLKMELK 227
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BLAST of mRNA_L-elsbetiae_contig101.143.1 vs. uniprot
Match: Q6XLZ1_9PHYC (FirrV-1-B45 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLZ1_9PHYC)

HSP 1 Score: 60.5 bits (145), Expect = 2.660e-7
Identity = 45/128 (35.16%), Postives = 73/128 (57.03%), Query Frame = 1 
Query:  622 ELNSNSLTIGD--TNPVVLDAAGLTVGSTLSLSTANGLQAGDISLDKNNGLIIGTGSEALALDDDMSLNLGEDVLLNHDGLYFHNDNSAIYMGSSKEWKISLDPTSRNLKFEFFESSSTSYVVKMELK 999
            E++   LT+G   T+  +LD  G+ +G+  S +        D +   N  L + TG +AL + +      GE VL N  GL   +  + IYMG S EWKIS++ ++R L+FE+++S + ++V+KMELK
Sbjct:   61 EVSDIDLTLGYDVTDVSLLDGGGIVLGNDTSSTKTLTYSHTDDAWLSNISLGLPTG-QALTIGE------GEFVLGNDKGLVMTSTGAGIYMGPSAEWKISVNASTRYLQFEYYDSETDTWVLKMELK 181
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig101.143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
B5LWE3_9PHYC2.590e-4532.63Uncharacterized protein n=1 Tax=Feldmannia species... [more]
Q6XLZ1_9PHYC2.660e-735.16FirrV-1-B45 n=1 Tax=Feldmannia irregularis virus a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig101contigL-elsbetiae_contig101:25012..26352 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-71
Ec32 orthologEc-06_006090.1
Exons2
Model size1011
Cds size1011
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815241.5378253-CDS-L-elsbetiae_contig101:25011..258161622815241.5378253-CDS-L-elsbetiae_contig101:25011..25816Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig101 25012..25816 +
1691682790.7797222-CDS-L-elsbetiae_contig101:25011..258161691682790.7797222-CDS-L-elsbetiae_contig101:25011..25816Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig101 25012..25816 +
1622815241.5493574-CDS-L-elsbetiae_contig101:26146..263521622815241.5493574-CDS-L-elsbetiae_contig101:26146..26352Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig101 26147..26352 +
1691682790.7895105-CDS-L-elsbetiae_contig101:26146..263521691682790.7895105-CDS-L-elsbetiae_contig101:26146..26352Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig101 26147..26352 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig101.143.1prot_L-elsbetiae_contig101.143.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig101 25012..26352 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig101.143.1

>prot_L-elsbetiae_contig101.143.1 ID=prot_L-elsbetiae_contig101.143.1|Name=mRNA_L-elsbetiae_contig101.143.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=337bp
MSVDAYIKDITNHSYQICGKLFSGDFTQIVKQNHDGTDLSLNHSFYSVDD
DGVVKQLGGLSFSENVGGSVSLNLNVTDPVSGQSKSVLALSPSGVSVAGG
IDVVGGGSTNFETSTINVADYDITLGSGAMTPSDLNGGGIVLGTVESGTK
TIRFYDDIGSWSSNVGFNVEAGNRLTVNTDSVVLDETGLTISDIILSQNG
LSIGNKVELNSNSLTIGDTNPVVLDAAGLTVGSTLSLSTANGLQAGDISL
DKNNGLIIGTGSEALALDDDMSLNLGEDVLLNHDGLYFHNDNSAIYMGSS
KEWKISLDPTSRNLKFEFFESSSTSYVVKMELKSSQ*
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mRNA from alignment at L-elsbetiae_contig101:25012..26352+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig101.143.1 ID=mRNA_L-elsbetiae_contig101.143.1|Name=mRNA_L-elsbetiae_contig101.143.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1341bp|location=Sequence derived from alignment at L-elsbetiae_contig101:25012..26352+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCCGTCGATGCGTACATCAAAGATATCACGAATCACAGCTACCAGAT
ATGTGGAAAACTATTCTCGGGCGATTTCACACAGATTGTAAAGCAAAATC
ACGACGGGACTGACCTGTCTCTCAACCACTCCTTCTACAGCGTGGACGAC
GATGGGGTCGTCAAACAGTTGGGTGGGTTGAGTTTCTCCGAAAATGTTGG
AGGATCGGTTAGTTTGAATCTAAATGTTACAGACCCTGTCTCTGGACAAT
CCAAATCCGTTTTGGCTCTCTCACCCAGTGGCGTCAGCGTTGCCGGAGGG
ATCGATGTCGTTGGGGGTGGAAGTACCAACTTCGAAACGTCCACGATTAA
CGTAGCCGACTACGACATAACACTTGGGTCCGGTGCGATGACCCCATCTG
ACTTGAACGGCGGTGGGATCGTCCTAGGTACCGTAGAATCCGGAACGAAG
ACTATACGATTCTACGACGACATAGGTTCATGGTCTTCTAATGTAGGATT
TAATGTCGAGGCAGGAAATCGCTTAACTGTCAACACGGACTCGGTCGTTC
TGGACGAAACAGGTCTCACCATCTCGGATATAATTCTGTCTCAGAATGGT
CTCAGTATAGGGAACAAGGTGGAGCTAAACTCAAATTCACTGACAATTGG
GGACACTAATCCCGTCGTTCTCGACGCTGCGGGTTTGACGGTTGGGAGTA
CATTGTCCTTGAGCACCGCCAATGGGCTACAGGCGGGGGATATTTCACTT
GACAAAAACAATGGACTCATAATTGGAACTGGTAGTGAAGCGCTCGCCCT
CGACGGTTCTGGACTCTTTGTTGGGGAATCCATTGAACTCAGTGTCAACA
CTGGGCTTACACTCGGAACTATAAATCTCAGTACCCACGGTCTCACAGTT
GGGTCCGGTTTAGAACTAAGTCAGGCAAACGGGTTGGTTTTGAGCAAAGT
TAATTTGCAAAACGAGGGCCTCACATTCGAGTCGGGGACAGGGGATGTGG
TACTTAACGAACATGGGTTGCGTCTCGGACAAGAGGTCTCCATAACAAAA
GATGGGGGGCTGTCGATTGGGGAAGACTTCAAACTTGGCGGAAGCGCATT
CGTGATCGGACTCGCTCCGGACGAGACCACTCTAGACGATATGTCCCTAA
ACTTAGGTGAGGACGTCCTATTAAACCACGATGGATTATATTTCCACAAC
GACAATTCAGCGATTTACATGGGGTCGTCCAAGGAGTGGAAAATCTCCCT
TGACCCGACCTCACGGAATCTTAAATTTGAATTCTTTGAATCAAGTTCAA
CGTCATACGTTGTGAAGATGGAACTGAAATCCAGTCAATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig101:25012..26352+

>mRNA_L-elsbetiae_contig101.143.1 ID=mRNA_L-elsbetiae_contig101.143.1|Name=mRNA_L-elsbetiae_contig101.143.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2022bp|location=Sequence derived from alignment at L-elsbetiae_contig101:25012..26352+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCCGTCGATGCGTACATCAAAGATATCACGAATCACAGCTACCAGAT
ATGTGGAAAACTATTCTCGGGCGATTTCACACAGATTGTAAAGCAAAATC
ACGACGGGACTGACCTGTCTCTCAACCACTCCTTCTACAGCGTGGACGAC
GATGGGGTCGTCAAACAGTTGGGTGGGTTGAGTTTCTCCGAAAATGTTGG
AGGATCGGTTAGTTTGAATCTAAATGTTACAGACCCTGTCTCTGGACAAT
CCAAATCCGTTTTGGCTCTCTCACCCAGTGGCGTCAGCGTTGCCGGAGGG
ATCGATGTCGTTGGGGGTGGAAGTACCAACTTCGAAACGTCCACGATTAA
CGTAGCCGACTACGACATAACACTTGGGTCCGGTGCGATGACCCCATCTG
ACTTGAACGGCGGTGGGATCGTCCTAGGTACCGTAGAATCCGGAACGAAG
ACTATACGATTCTACGACGACATAGGTTCATGGTCTTCTAATGTAGGATT
TAATGTCGAGGCAGGAAATCGCTTAACTGTCAACACGGACTCGGTCGTTC
TGGACGAAACAGGTCTCACCATCTCGGATATAATTCTGTCTCAGAATGGT
CTCAGTATAGGGAACAAGGTGGAGCTAAACTCAAATTCACTGACAATTGG
GGACACTAATCCCGTCGTTCTCGACGCTGCGGGTTTGACGGTTGGGAGTA
CATTGTCCTTGAGCACCGCCAATGGGCTACAGGCGGGGGATATTTCACTT
GACAAAAACAATGGACTCATAATTGGAACTGGTAGTGAAGCGCTCGCCCT
CGACGATGTCCGTCGATGCGTACATCAAAGATATCACGAATCACAGCTAC
CAGATATGTGGAAAACTATTCTCGGGCGATTTCACACAGATTGTAAAGCA
AAATCACGACGGGACTGACCTGTCTCTCAACCACTCCTTCTACAGCGTGG
ACGACGATGGGGTCGTCAAACAGTTGGGTGGGTTGAGTTTCTCCGAAAAT
GTTGGAGGATCGGTTAGTTTGAATCTAAATGTTACAGACCCTGTCTCTGG
ACAATCCAAATCCGTTTTGGCTCTCTCACCCAGTGGCGTCAGCGTTGCCG
GAGGGATCGATGTCGTTGGGGGTGGAAGTACCAACTTCGAAACGTCCACG
ATTAACGTAGCCGACTACGACATAACACTTGGGTCCGGTGCGATGACCCC
ATCTGACTTGAACGGCGGTGGGATCGTCCTAGGTACCGTAGAATCCGGAA
CGAAGACTATACGATTCTACGACGACATAGGTTCATGGTCTTCTAATGTA
GGATTTAATGTCGAGGCAGGAAATCGCTTAACTGTCAACACGGACTCGGT
CGTTCTGGACGAAACAGGTCTCACCATCTCGGATATAATTCTGTCTCAGA
ATGGTCTCAGTATAGGGAACAAGGTGGAGCTAAACTCAAATTCACTGACA
ATTGGGGACACTAATCCCGTCGTTCTCGACGCTGCGGGTTTGACGGTTGG
GAGTACATTGTCCTTGAGCACCGCCAATGGGCTACAGGCGGGGGATATTT
CACTTGACAAAAACAATGGACTCATAATTGGAACTGGTAGTGAAGCGCTC
GCCCTCGACGACGATATGTCCCTAAACTTAGGTGAGGACGTCCTATTAAA
CCACGATGGATTATATTTCCACAACGACAATTCAGCGATTTACATGGGGT
CGTCCAAGGAGTGGAAAATCTCCCTTGACCCGACCTCACGGAATCTTAAA
TTTGAATTCTTTGAATCAAGTTCAACGTCATACGTTGTGAAGATGGAACT
GAAATCCAGTCAATGAACGATATGTCCCTAAACTTAGGTGAGGACGTCCT
ATTAAACCACGATGGATTATATTTCCACAACGACAATTCAGCGATTTACA
TGGGGTCGTCCAAGGAGTGGAAAATCTCCCTTGACCCGACCTCACGGAAT
CTTAAATTTGAATTCTTTGAATCAAGTTCAACGTCATACGTTGTGAAGAT
GGAACTGAAATCCAGTCAATGA
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