mRNA_L-elsbetiae_contig5860.14326.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5860.14326.1
Unique NamemRNA_L-elsbetiae_contig5860.14326.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5860.14326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5860contigL-elsbetiae_contig5860:3633..4051 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_001450.1
Exons1
Model size421
Cds size402
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816632.9516249-UTR-L-elsbetiae_contig5860:3632..36491622816632.9516249-UTR-L-elsbetiae_contig5860:3632..3649Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5860 3633..3649 +
1691683699.6083372-UTR-L-elsbetiae_contig5860:3632..36491691683699.6083372-UTR-L-elsbetiae_contig5860:3632..3649Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5860 3633..3649 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816632.96392-CDS-L-elsbetiae_contig5860:3649..40511622816632.96392-CDS-L-elsbetiae_contig5860:3649..4051Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5860 3650..4051 +
1691683699.61835-CDS-L-elsbetiae_contig5860:3649..40511691683699.61835-CDS-L-elsbetiae_contig5860:3649..4051Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5860 3650..4051 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5860.14326.1prot_L-elsbetiae_contig5860.14326.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5860 3650..4051 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5860.14326.1

>prot_L-elsbetiae_contig5860.14326.1 ID=prot_L-elsbetiae_contig5860.14326.1|Name=mRNA_L-elsbetiae_contig5860.14326.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=134bp
MPLSPGRSKMARVRIATAMTPWSTNRQPASAAAAAAAAGSQSQPQASFCP
SPPAAGTDAKAEFFQRSLSRLSTNPPSTSPTTTAATSAARPGNAHSGDNG
GAGAAWATARAAAAHAAGGADASCPGLAGAETGG
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mRNA from alignment at L-elsbetiae_contig5860:3633..4051+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5860.14326.1 ID=mRNA_L-elsbetiae_contig5860.14326.1|Name=mRNA_L-elsbetiae_contig5860.14326.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=419bp|location=Sequence derived from alignment at L-elsbetiae_contig5860:3633..4051+ (Laminarionema elsbetiae ELsaHSoW15)
CGTCTGGTCTCTCGTCGATGCCGCTGTCCCCGGGGCGGAGTAAGATGGCG
CGCGTGAGAATCGCGACAGCGATGACGCCGTGGTCGACCAACAGACAGCC
GGCCTCAGCGGCGGCGGCGGCGGCGGCGGCAGGGTCGCAATCGCAACCAC
AGGCATCCTTCTGTCCGTCTCCCCCTGCTGCTGGCACGGACGCCAAGGCG
GAGTTTTTCCAGCGCTCGTTGTCGCGCCTGTCGACCAACCCTCCCTCGAC
CTCGCCGACAACCACCGCGGCAACCTCCGCCGCCCGCCCCGGGAACGCCC
ACAGCGGCGACAACGGCGGCGCGGGCGCAGCATGGGCGACAGCGCGGGCC
GCGGCGGCCCATGCTGCAGGGGGTGCCGATGCCTCGTGCCCCGGGCTAGC
CGGGGCCGAGACTGGCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5860:3633..4051+

>mRNA_L-elsbetiae_contig5860.14326.1 ID=mRNA_L-elsbetiae_contig5860.14326.1|Name=mRNA_L-elsbetiae_contig5860.14326.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=804bp|location=Sequence derived from alignment at L-elsbetiae_contig5860:3633..4051+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGCTGTCCCCGGGGCGGAGTAAGATGGCGCGCGTGAGAATCGCGAC
AGCGATGACGCCGTGGTCGACCAACAGACAGCCGGCCTCAGCGGCGGCGG
CGGCGGCGGCGGCAGGGTCGCAATCGCAACCACAGGCATCCTTCTGTCCG
TCTCCCCCTGCTGCTGGCACGGACGCCAAGGCGGAGTTTTTCCAGCGCTC
GTTGTCGCGCCTGTCGACCAACCCTCCCTCGACCTCGCCGACAACCACCG
CGGCAACCTCCGCCGCCCGCCCCGGGAACGCCCACAGCGGCGACAACGGC
GGCGCGGGCGCAGCATGGGCGACAGCGCGGGCCGCGGCGGCCCATGCTGC
AGGGGGTGCCGATGCCTCGTGCCCCGGGCTAGCCGGGGCCGAGACTGGCG
GGATGCCGCTGTCCCCGGGGCGGAGTAAGATGGCGCGCGTGAGAATCGCG
ACAGCGATGACGCCGTGGTCGACCAACAGACAGCCGGCCTCAGCGGCGGC
GGCGGCGGCGGCGGCAGGGTCGCAATCGCAACCACAGGCATCCTTCTGTC
CGTCTCCCCCTGCTGCTGGCACGGACGCCAAGGCGGAGTTTTTCCAGCGC
TCGTTGTCGCGCCTGTCGACCAACCCTCCCTCGACCTCGCCGACAACCAC
CGCGGCAACCTCCGCCGCCCGCCCCGGGAACGCCCACAGCGGCGACAACG
GCGGCGCGGGCGCAGCATGGGCGACAGCGCGGGCCGCGGCGGCCCATGCT
GCAGGGGGTGCCGATGCCTCGTGCCCCGGGCTAGCCGGGGCCGAGACTGG
CGGG
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