mRNA_L-elsbetiae_contig5859.14320.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5859.14320.1
Unique NamemRNA_L-elsbetiae_contig5859.14320.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5859.14320.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5859contigL-elsbetiae_contig5859:5712..6322 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size612
Cds size345
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816632.1972036-CDS-L-elsbetiae_contig5859:5711..60561622816632.1972036-CDS-L-elsbetiae_contig5859:5711..6056Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5859 5712..6056 +
1691683699.054673-CDS-L-elsbetiae_contig5859:5711..60561691683699.054673-CDS-L-elsbetiae_contig5859:5711..6056Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5859 5712..6056 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816632.2155545-UTR-L-elsbetiae_contig5859:6056..63221622816632.2155545-UTR-L-elsbetiae_contig5859:6056..6322Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5859 6057..6322 +
1691683699.0690293-UTR-L-elsbetiae_contig5859:6056..63221691683699.0690293-UTR-L-elsbetiae_contig5859:6056..6322Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5859 6057..6322 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5859.14320.1prot_L-elsbetiae_contig5859.14320.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5859 5712..6056 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5859.14320.1

>prot_L-elsbetiae_contig5859.14320.1 ID=prot_L-elsbetiae_contig5859.14320.1|Name=mRNA_L-elsbetiae_contig5859.14320.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp
VPSPARRPYPAAGLFRVDVSPFLAAARAVIYFRWQKTSTFFSPHRQNCQH
VRKHGKFDTCESQHEDKSSRGWSFVCGTSTTHAYMHIYIYKKKSTGEPEV
TNKTQHTAPWGRAL*
back to top

mRNA from alignment at L-elsbetiae_contig5859:5712..6322+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5859.14320.1 ID=mRNA_L-elsbetiae_contig5859.14320.1|Name=mRNA_L-elsbetiae_contig5859.14320.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=611bp|location=Sequence derived from alignment at L-elsbetiae_contig5859:5712..6322+ (Laminarionema elsbetiae ELsaHSoW15)
GTCCCTTCCCCAGCGCGACGGCCATACCCCGCCGCAGGGCTGTTTCGCGT
CGACGTCTCGCCTTTTCTCGCCGCGGCGAGAGCTGTCATCTACTTTCGCT
GGCAAAAAACCTCAACCTTTTTCTCGCCTCACCGCCAAAACTGTCAACAC
GTCCGGAAACATGGCAAATTTGACACATGCGAGAGCCAACACGAGGACAA
AAGCAGCCGTGGCTGGTCATTCGTGTGCGGCACATCTACTACACACGCGT
ACATGCATATATATATATATAAAAAAAAAAGCACCGGTGAACCAGAGGTA
ACAAACAAAACCCAACACACGGCGCCGTGGGGGCGGGCATTATAGCGGCG
GCGGCGCACCGCACTACTCGACGGCACGACCCACAACACGCACAAAACCA
ACTTGTCGCTTCTTCGCGATAACGCTGCCCTCTTTCTCAACCGCGTCTCG
ATATTTAGCAAAAAAAAGAACAACCCCAACCGATGAAAACGATCAAGATG
AAAACAAGCCACGCGTTGTGTACCTTTCGATAACGCTGCCCTCTTTCTCA
ACCGCGTCTCGATATTTAGCAAAAAAAAGAACAACCCCAACCGATGAAAA
CGATCAAGATG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5859:5712..6322+

>mRNA_L-elsbetiae_contig5859.14320.1 ID=mRNA_L-elsbetiae_contig5859.14320.1|Name=mRNA_L-elsbetiae_contig5859.14320.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig5859:5712..6322+ (Laminarionema elsbetiae ELsaHSoW15)
GTCCCTTCCCCAGCGCGACGGCCATACCCCGCCGCAGGGCTGTTTCGCGT
CGACGTCTCGCCTTTTCTCGCCGCGGCGAGAGCTGTCATCTACTTTCGCT
GGCAAAAAACCTCAACCTTTTTCTCGCCTCACCGCCAAAACTGTCAACAC
GTCCGGAAACATGGCAAATTTGACACATGCGAGAGCCAACACGAGGACAA
AAGCAGCCGTGGCTGGTCATTCGTGTGCGGCACATCTACTACACACGCGT
ACATGCATATATATATATATAAAAAAAAAAGCACCGGTGAACCAGAGGTA
ACAAACAAAACCCAACACACGGCGCCGTGGGGGCGGGCATTATAGGTCCC
TTCCCCAGCGCGACGGCCATACCCCGCCGCAGGGCTGTTTCGCGTCGACG
TCTCGCCTTTTCTCGCCGCGGCGAGAGCTGTCATCTACTTTCGCTGGCAA
AAAACCTCAACCTTTTTCTCGCCTCACCGCCAAAACTGTCAACACGTCCG
GAAACATGGCAAATTTGACACATGCGAGAGCCAACACGAGGACAAAAGCA
GCCGTGGCTGGTCATTCGTGTGCGGCACATCTACTACACACGCGTACATG
CATATATATATATATAAAAAAAAAAGCACCGGTGAACCAGAGGTAACAAA
CAAAACCCAACACACGGCGCCGTGGGGGCGGGCATTATAG
back to top