mRNA_L-elsbetiae_contig5801.14235.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5801.14235.1
Unique NamemRNA_L-elsbetiae_contig5801.14235.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5801.14235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5801contigL-elsbetiae_contig5801:1044..2013 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size972
Cds size519
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816624.133314-UTR-L-elsbetiae_contig5801:1043..14941622816624.133314-UTR-L-elsbetiae_contig5801:1043..1494Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5801 1044..1494 +
1691683693.1789725-UTR-L-elsbetiae_contig5801:1043..14941691683693.1789725-UTR-L-elsbetiae_contig5801:1043..1494Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5801 1044..1494 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816624.1437092-CDS-L-elsbetiae_contig5801:1494..20131622816624.1437092-CDS-L-elsbetiae_contig5801:1494..2013Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5801 1495..2013 +
1691683693.1922083-CDS-L-elsbetiae_contig5801:1494..20131691683693.1922083-CDS-L-elsbetiae_contig5801:1494..2013Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5801 1495..2013 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5801.14235.1prot_L-elsbetiae_contig5801.14235.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5801 1495..2013 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5801.14235.1

>prot_L-elsbetiae_contig5801.14235.1 ID=prot_L-elsbetiae_contig5801.14235.1|Name=mRNA_L-elsbetiae_contig5801.14235.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=173bp
MSEKHYLHRQQINEEPKKLDLSLSRRTGLIPSIRHRYSPSSLRLFVGPCF
DGSDRAFPFSTAAGTTSGAGRLWALSGSGFGRSPPPPSPPLTPPPSPPPS
PPYFVLDDDGASAPLASGWSAPPLSLCADDAAAAPAAPGASSGVARFSPL
LLLLLVLVLVVVPLFLPLSWADS
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mRNA from alignment at L-elsbetiae_contig5801:1044..2013+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5801.14235.1 ID=mRNA_L-elsbetiae_contig5801.14235.1|Name=mRNA_L-elsbetiae_contig5801.14235.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=970bp|location=Sequence derived from alignment at L-elsbetiae_contig5801:1044..2013+ (Laminarionema elsbetiae ELsaHSoW15)
AAATTTGTGGAAATTTTTAGTTGTCGCTGTGCTTGAACAAGTACTGCTAC
GAAGTAATACTAAATACCCATGAGACCCATTTATAAAACAAAACATGCTT
GGACAACACGACTGCAACACACCTAATTAGTAATTTATCACGGTATGATC
ACCTCAAAATTACGCAAATATTGAGTAATTTTGAAGGGTATTTCAAAAGG
AAAAGCTCAATTTTCGGCGCGCCGCGGGCCCCCTCCGGAGGGGGGGGCTA
CGCGGCCGGCGCCCTCCGGGGGCCCTCCTGGGGGGCCCCTGCGGAGGGCC
GCAGGTCGCCTTCGGCTCGGGTCTGCGCAAGCGCAGACCGAGCCTCGGCC
ACTTTTCAAAGCCTGATGCGCACCACCTAAGCAAAAACAACAACAGCAAG
CATGACAACCCGGCCTGTCCATCTGCACCGAGACATACTTCTACAAACAA
AATGAGCGAGAAACACTACCTTCATCGACAGCAAATAAACGAAGAACCCA
AGAAGCTTGATCTCTCACTTTCTCGTCGTACAGGACTTATACCAAGTATA
CGGCACCGCTACTCTCCCTCTTCCCTCCGCCTCTTCGTGGGCCCTTGTTT
CGACGGCTCCGACCGTGCATTCCCATTCTCTACGGCCGCTGGAACAACCT
CAGGTGCGGGGCGCTTGTGGGCGCTTTCGGGGTCTGGCTTCGGCCGCTCG
CCGCCGCCGCCTAGTCCCCCGCTAACCCCGCCCCCGTCCCCGCCGCCGTC
ACCGCCATATTTTGTACTTGATGACGACGGGGCTTCGGCTCCGTTGGCGT
CCGGGTGGTCGGCACCGCCGTTGTCCCTTTGCGCAGACGACGCAGCGGCA
GCGCCTGCAGCACCGGGCGCTTCCTCGGGCGTTGCCCGTTTCTCACCGTT
GCTGCTGTTGCTGTTGGTGTTGGTGTTGGTGGTAGTGCCGTTGTTTCTGC
CGCTGTCTTGGGCCGATTCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5801:1044..2013+

>mRNA_L-elsbetiae_contig5801.14235.1 ID=mRNA_L-elsbetiae_contig5801.14235.1|Name=mRNA_L-elsbetiae_contig5801.14235.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1038bp|location=Sequence derived from alignment at L-elsbetiae_contig5801:1044..2013+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCGAGAAACACTACCTTCATCGACAGCAAATAAACGAAGAACCCAA
GAAGCTTGATCTCTCACTTTCTCGTCGTACAGGACTTATACCAAGTATAC
GGCACCGCTACTCTCCCTCTTCCCTCCGCCTCTTCGTGGGCCCTTGTTTC
GACGGCTCCGACCGTGCATTCCCATTCTCTACGGCCGCTGGAACAACCTC
AGGTGCGGGGCGCTTGTGGGCGCTTTCGGGGTCTGGCTTCGGCCGCTCGC
CGCCGCCGCCTAGTCCCCCGCTAACCCCGCCCCCGTCCCCGCCGCCGTCA
CCGCCATATTTTGTACTTGATGACGACGGGGCTTCGGCTCCGTTGGCGTC
CGGGTGGTCGGCACCGCCGTTGTCCCTTTGCGCAGACGACGCAGCGGCAG
CGCCTGCAGCACCGGGCGCTTCCTCGGGCGTTGCCCGTTTCTCACCGTTG
CTGCTGTTGCTGTTGGTGTTGGTGTTGGTGGTAGTGCCGTTGTTTCTGCC
GCTGTCTTGGGCCGATTCCATGAGCGAGAAACACTACCTTCATCGACAGC
AAATAAACGAAGAACCCAAGAAGCTTGATCTCTCACTTTCTCGTCGTACA
GGACTTATACCAAGTATACGGCACCGCTACTCTCCCTCTTCCCTCCGCCT
CTTCGTGGGCCCTTGTTTCGACGGCTCCGACCGTGCATTCCCATTCTCTA
CGGCCGCTGGAACAACCTCAGGTGCGGGGCGCTTGTGGGCGCTTTCGGGG
TCTGGCTTCGGCCGCTCGCCGCCGCCGCCTAGTCCCCCGCTAACCCCGCC
CCCGTCCCCGCCGCCGTCACCGCCATATTTTGTACTTGATGACGACGGGG
CTTCGGCTCCGTTGGCGTCCGGGTGGTCGGCACCGCCGTTGTCCCTTTGC
GCAGACGACGCAGCGGCAGCGCCTGCAGCACCGGGCGCTTCCTCGGGCGT
TGCCCGTTTCTCACCGTTGCTGCTGTTGCTGTTGGTGTTGGTGTTGGTGG
TAGTGCCGTTGTTTCTGCCGCTGTCTTGGGCCGATTCC
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