mRNA_L-elsbetiae_contig5739.14135.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5739.14135.1
Unique NamemRNA_L-elsbetiae_contig5739.14135.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5739.14135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5739contigL-elsbetiae_contig5739:4297..5634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size516
Cds size516
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5739.14135.1prot_L-elsbetiae_contig5739.14135.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5739 4297..5634 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816613.7891614-CDS-L-elsbetiae_contig5739:4296..44101622816613.7891614-CDS-L-elsbetiae_contig5739:4296..4410Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5739 4297..4410 +
1691683685.4296553-CDS-L-elsbetiae_contig5739:4296..44101691683685.4296553-CDS-L-elsbetiae_contig5739:4296..4410Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5739 4297..4410 +
1622816613.8011172-CDS-L-elsbetiae_contig5739:4551..47251622816613.8011172-CDS-L-elsbetiae_contig5739:4551..4725Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5739 4552..4725 +
1691683685.4387496-CDS-L-elsbetiae_contig5739:4551..47251691683685.4387496-CDS-L-elsbetiae_contig5739:4551..4725Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5739 4552..4725 +
1622816613.814333-CDS-L-elsbetiae_contig5739:4948..50931622816613.814333-CDS-L-elsbetiae_contig5739:4948..5093Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5739 4949..5093 +
1691683685.4471405-CDS-L-elsbetiae_contig5739:4948..50931691683685.4471405-CDS-L-elsbetiae_contig5739:4948..5093Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5739 4949..5093 +
1622816613.8267603-CDS-L-elsbetiae_contig5739:5551..56341622816613.8267603-CDS-L-elsbetiae_contig5739:5551..5634Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5739 5552..5634 +
1691683685.455797-CDS-L-elsbetiae_contig5739:5551..56341691683685.455797-CDS-L-elsbetiae_contig5739:5551..5634Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5739 5552..5634 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5739.14135.1

>prot_L-elsbetiae_contig5739.14135.1 ID=prot_L-elsbetiae_contig5739.14135.1|Name=mRNA_L-elsbetiae_contig5739.14135.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=172bp
MVEQIKDKVSATAELAEAVTRARAAAKQAKNAHKRLISVSASANDVALDG
GTQEEEDVARESIAAVRGARMAAARAWWKHKQAEHFHGIAQRELKQMRLA
AGIDDAMSDGSDEESDGDSFDYDSADSDVTHGWNSQDDSLSSDDDVGDEE
EEDQVDSSALPDLEYATKGATA
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mRNA from alignment at L-elsbetiae_contig5739:4297..5634+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5739.14135.1 ID=mRNA_L-elsbetiae_contig5739.14135.1|Name=mRNA_L-elsbetiae_contig5739.14135.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1338bp|location=Sequence derived from alignment at L-elsbetiae_contig5739:4297..5634+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGGAACAGATCAAGGACAAAGTTTCTGCCACAGCGGAGTTGGCGGA
GGCCGTGACAAGAGCAAGGGCAGCTGCCAAGCAGGCCAAGAACGCCCACA
AAAGGCTGATATCGGTGGGTAAATGCCGTCGCGAGTCCTGTGTGTCATGT
GGAGCTTGGGTCGAAGCGGATCGTCGGCGTGGATGACTTGCAGTCAGAGC
CTCGCGTCATATTTGAACAGTGCTAGAAAGCAACCATTTTGCCGTTCTTT
TACAGGTTTCGGCAAGTGCCAATGACGTAGCCTTGGACGGCGGCACCCAG
GAGGAGGAGGATGTCGCTAGAGAATCAATTGCCGCTGTCAGGGGTGCTAG
AATGGCGGCAGCTAGAGCCTGGTGGAAGCACAAGCAGGCTGAGCACTTCC
ACGGAATTGCACAACGAGAGCTCAAGCAGGTGAGGCTCCTGTCCGCACCA
ACGTTCGTCTGCCGCTTGGAGTGGTGCGAGCGCTTTCCCGGAAAGCCAGG
GATCGACTTGGATGGTTGTCACCTCCGCGTGGTTTGGGATTACTTTGTTC
GTTTGTGTGAGGGTTTCGGGGTCGTCCAGGGCGTTGTTCTGCTTTTTTTA
CTCTGCCGCGAGCTACGTATTGAATCGCGTCAACCCCCAACATGTACTAC
AGATGCGCCTTGCCGCCGGCATTGACGATGCGATGAGCGATGGCTCAGAC
GAGGAAAGCGACGGTGACTCATTCGACTATGACTCTGCCGATAGCGATGT
CACACATGGGTGGAACAGCCAGGACGACTCCCTCTCGTCGGATGACGGTA
TGCGAACGGAAGATCGGTAGACCCAACGGCAGCTCGAATCAATGCGCAGC
GTCCCGGCTGTGTAGCATTCCGTTTGCCCCTCCCCTCCCGCACTCTGAGA
CGAAAGTACTAGAAGCGCAGGAAATACGCTGTTGGCCCCGAGTGGCCTTT
CGGGAAATCATTTTGGGGTACATACTGCTGTCGACGCTCCTTATTGGAAA
TCTTGTTGCCCACGTCGTTATACTTGCTCGTCGAAAGGCAAGACTAATGG
CTGTGTTGCCATTGTAAGTATGTCGTAAAGCTTGGGTGTGCAGAGAAGAG
TGTTGCCTGACACTTCTTCCGTGTACCTGTAGTTTTTTGTGCTTGAGTCG
GATGGGAATTGTCGTGAAGCCTCTTGAAGCTCCCGCCTCACCCTCTTCAC
TATAGAAAACCGCAACAGGAGTTGGAATGTGTTTTTGTGTGCCTGTTTTG
GTCAGATGTTGGCGACGAGGAAGAGGAAGACCAGGTGGACAGTTCAGCCC
TCCCCGATCTGGAGTACGCCACGAAGGGCGCTACTGCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5739:4297..5634+

>mRNA_L-elsbetiae_contig5739.14135.1 ID=mRNA_L-elsbetiae_contig5739.14135.1|Name=mRNA_L-elsbetiae_contig5739.14135.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1032bp|location=Sequence derived from alignment at L-elsbetiae_contig5739:4297..5634+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGGAACAGATCAAGGACAAAGTTTCTGCCACAGCGGAGTTGGCGGA
GGCCGTGACAAGAGCAAGGGCAGCTGCCAAGCAGGCCAAGAACGCCCACA
AAAGGCTGATATCGATGGTGGAACAGATCAAGGACAAAGTTTCTGCCACA
GCGGAGTTGGCGGAGGCCGTGACAAGAGCAAGGGCAGCTGCCAAGCAGGC
CAAGAACGCCCACAAAAGGCTGATATCGGTTTCGGCAAGTGCCAATGACG
TAGCCTTGGACGGCGGCACCCAGGAGGAGGAGGATGTCGCTAGAGAATCA
ATTGCCGCTGTCAGGGGTGCTAGAATGGCGGCAGCTAGAGCCTGGTGGAA
GCACAAGCAGGCTGAGCACTTCCACGGAATTGCACAACGAGAGCTCAAGC
AGGTTTCGGCAAGTGCCAATGACGTAGCCTTGGACGGCGGCACCCAGGAG
GAGGAGGATGTCGCTAGAGAATCAATTGCCGCTGTCAGGGGTGCTAGAAT
GGCGGCAGCTAGAGCCTGGTGGAAGCACAAGCAGGCTGAGCACTTCCACG
GAATTGCACAACGAGAGCTCAAGCAGATGCGCCTTGCCGCCGGCATTGAC
GATGCGATGAGCGATGGCTCAGACGAGGAAAGCGACGGTGACTCATTCGA
CTATGACTCTGCCGATAGCGATGTCACACATGGGTGGAACAGCCAGGACG
ACTCCCTCTCGTCGGATGACGATGCGCCTTGCCGCCGGCATTGACGATGC
GATGAGCGATGGCTCAGACGAGGAAAGCGACGGTGACTCATTCGACTATG
ACTCTGCCGATAGCGATGTCACACATGGGTGGAACAGCCAGGACGACTCC
CTCTCGTCGGATGACGATGTTGGCGACGAGGAAGAGGAAGACCAGGTGGA
CAGTTCAGCCCTCCCCGATCTGGAGTACGCCACGAAGGGCGCTACTGCTA
TGTTGGCGACGAGGAAGAGGAAGACCAGGTGGACAGTTCAGCCCTCCCCG
ATCTGGAGTACGCCACGAAGGGCGCTACTGCT
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