mRNA_L-elsbetiae_contig5656.14006.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5656.14006.1
Unique NamemRNA_L-elsbetiae_contig5656.14006.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5656.14006.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5656contigL-elsbetiae_contig5656:5165..6722 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size417
Cds size417
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5656.14006.1prot_L-elsbetiae_contig5656.14006.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5656 5165..6722 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816601.874021-CDS-L-elsbetiae_contig5656:5164..53881622816601.874021-CDS-L-elsbetiae_contig5656:5164..5388Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5656 5165..5388 -
1691683677.206775-CDS-L-elsbetiae_contig5656:5164..53881691683677.206775-CDS-L-elsbetiae_contig5656:5164..5388Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5656 5165..5388 -
1622816601.8854702-CDS-L-elsbetiae_contig5656:5761..58971622816601.8854702-CDS-L-elsbetiae_contig5656:5761..5897Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5656 5762..5897 -
1691683677.2179508-CDS-L-elsbetiae_contig5656:5761..58971691683677.2179508-CDS-L-elsbetiae_contig5656:5761..5897Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5656 5762..5897 -
1622816601.8977122-CDS-L-elsbetiae_contig5656:6665..67221622816601.8977122-CDS-L-elsbetiae_contig5656:6665..6722Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5656 6666..6722 -
1691683677.2284944-CDS-L-elsbetiae_contig5656:6665..67221691683677.2284944-CDS-L-elsbetiae_contig5656:6665..6722Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5656 6666..6722 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5656.14006.1

>prot_L-elsbetiae_contig5656.14006.1 ID=prot_L-elsbetiae_contig5656.14006.1|Name=mRNA_L-elsbetiae_contig5656.14006.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=139bp
MRYESEAALFYVEFDPFFGFRWYASYYIGELDNYGVGESSVTVCRTNEDI
GIDIQPADGTLTYECDLDGDGVRETSPATAAVLSFSCGCDGEASSPPAPT
TPTPSATPDSIDSTEPPVAAPPTTTTIAPSPAPTTPTPS
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mRNA from alignment at L-elsbetiae_contig5656:5165..6722-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5656.14006.1 ID=mRNA_L-elsbetiae_contig5656.14006.1|Name=mRNA_L-elsbetiae_contig5656.14006.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1558bp|location=Sequence derived from alignment at L-elsbetiae_contig5656:5165..6722- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGTACGAGTCGGAAGCAGCGTTGTTCTACGTTGAGTTCGACCCTTT
CTTCGGGGTAAGTGATAAGTTAAGGTATTCACACGGCGGTGTGTAGCTCT
ATTCAGCACGCAACCGCCACAAAAACATAAATAGTACTTCGAAGTATCTA
GAGTGTAGACTAGATAAAATCTAAGATAGATAGTAAGTAGTATTCACACC
ACTGTTCGTTGTAGATCTGCATGCAGACCAATCTAGTAGGCAAGTTTTGG
TGTGAAAGTGTATCAGGCAGTTTTTCATGGCCACGTTGCGTTCGTTCGCC
GTTATTAGCAGACTCTGACTTGCCTGCCGATTCTTCCCTTCGGGCGTGCA
ATGCGTACTGTATCTCGACCAGCGACGGCTTTTGCTGCAGGCCCGCACCT
ATCATTGTTTATGTACCTGTCTTCTGACCGAAGTAGGGAAGTTTACAGAT
AAACATCATCAATGTTAGCAATCGCAAAACAACCCTCCTACCAGTCGGTA
ACCCTGCAAGCTATTTTATATCAAATATGTAGGAAGTATATAATTATTTC
CTGCAGATCTTTACTCGAAATCAAAATCGGCATACAGCGAGAACATCAGA
CGAATAGTATCTATATCACACATCATAACAAACAATACTACTATGTAAGC
GCCCCTCCTCATCGACATCGGTCCAAACTGTTTTGCCACATACATATTCG
GATGGGAGTGCAGAACAACAACAATATCATCATCGCGGTTGTGAACTTGT
TTTGAAATCATACACCATTTTATCATCCACGATATGTATTTCCTTCTCCG
TTGGCTTACATATGTCCCCCCGCAGTTTCGCTGGTACGCATCATACTACA
TCGGTGAGCTGGACAATTATGGCGTGGGCGAGTCCTCGGTTACTGTCTGC
CGTACAAACGAGGACATTGGAATTGACATTCAACCGGCGGATGGGACTTT
AACGTATGAATGTGAGTCTACCGCATTTATTTAAAGAAGGCAGTCATGAA
TCAACGTTCTGAATGGCGTAGAGGCAATAGGCGGGCATACAAACTCGGTG
AATGGCGCACACAATATTGTAGCTACATACGAGACCGATGGCCTACGCGT
GATAATTATCTACAGTGTGGCTAGATGTTTGAGCAAATACATTCGAGTGG
GCAAAGTCTCTCCGTACGTGCGATTTTTTGGCATAATAGACTAGACTAAT
GGCCTTGTCAACTGTTGTTATTTTGAGAACTGTGTAGAGGTTCCACCTTA
TGTAAGGGTGCAACCTTCCAACGTCTGTCTAAGATGTTAACCCTCTAATA
ATTGTCAATCGTTCCACTTTTCCCCTGCCACCAGGCGACCTCGATGGCGA
TGGTGTTCGTGAAACCAGCCCTGCCACGGCCGCCGTGCTGTCTTTCAGTT
GCGGCTGCGATGGCGAGGCGTCCTCCCCCCCGGCACCCACCACCCCCACT
CCGAGTGCCACTCCGGACTCCATAGACAGCACTGAACCCCCAGTGGCTGC
TCCCCCCACCACTACTACAATCGCTCCTTCCCCCGCACCCACCACGCCCA
CTCCGAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5656:5165..6722-

>mRNA_L-elsbetiae_contig5656.14006.1 ID=mRNA_L-elsbetiae_contig5656.14006.1|Name=mRNA_L-elsbetiae_contig5656.14006.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=834bp|location=Sequence derived from alignment at L-elsbetiae_contig5656:5165..6722- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGTACGAGTCGGAAGCAGCGTTGTTCTACGTTGAGTTCGACCCTTT
CTTCGGGATGCGGTACGAGTCGGAAGCAGCGTTGTTCTACGTTGAGTTCG
ACCCTTTCTTCGGGTTTCGCTGGTACGCATCATACTACATCGGTGAGCTG
GACAATTATGGCGTGGGCGAGTCCTCGGTTACTGTCTGCCGTACAAACGA
GGACATTGGAATTGACATTCAACCGGCGGATGGGACTTTAACGTATGAAT
TTTCGCTGGTACGCATCATACTACATCGGTGAGCTGGACAATTATGGCGT
GGGCGAGTCCTCGGTTACTGTCTGCCGTACAAACGAGGACATTGGAATTG
ACATTCAACCGGCGGATGGGACTTTAACGTATGAATGCGACCTCGATGGC
GATGGTGTTCGTGAAACCAGCCCTGCCACGGCCGCCGTGCTGTCTTTCAG
TTGCGGCTGCGATGGCGAGGCGTCCTCCCCCCCGGCACCCACCACCCCCA
CTCCGAGTGCCACTCCGGACTCCATAGACAGCACTGAACCCCCAGTGGCT
GCTCCCCCCACCACTACTACAATCGCTCCTTCCCCCGCACCCACCACGCC
CACTCCGAGCGCGACCTCGATGGCGATGGTGTTCGTGAAACCAGCCCTGC
CACGGCCGCCGTGCTGTCTTTCAGTTGCGGCTGCGATGGCGAGGCGTCCT
CCCCCCCGGCACCCACCACCCCCACTCCGAGTGCCACTCCGGACTCCATA
GACAGCACTGAACCCCCAGTGGCTGCTCCCCCCACCACTACTACAATCGC
TCCTTCCCCCGCACCCACCACGCCCACTCCGAGC
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