mRNA_L-elsbetiae_contig5629.13968.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5629.13968.1
Unique NamemRNA_L-elsbetiae_contig5629.13968.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig5629.13968.1 vs. uniprot
Match: A0A6H5K2B1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B1_9PHAE)

HSP 1 Score: 547 bits (1409), Expect = 1.890e-192
Identity = 268/302 (88.74%), Postives = 287/302 (95.03%), Query Frame = 1 
Query:    1 QIKKYHQMEAKVTQDDPILAKLNKVPIQISLGDMRLLRETVIMKWKDINRSYQGPLLGDTVLHRVCREGYLGALKFMLDPNSKSIFETETVDPNIVNKRKRTAMMLCFTSPHFTEIAKDFGLERDPETGLAIPRAKRPETAQTDQDWMKPGTRVDREEMVRILVEDLKANVKVLDMHEYSLLHYASISGWERTVDLLLDHGADPRQTCMTGETALHFAVSLRHGKAAETLLKRSQDLVNEADKDGDRAIHLAVQNGDQELVNLLVDYQADINSPNYRRVTPLAAACKRQDWRMVNHLLDKKA 906
            QIKKYHQMEAKV+QDDP+LAK+NK+P+QISLGDMRLLRETVIMKWKDINRSYQGPLLG+TVLHRVCREGYLGALKFMLDPNSKSIFETETVDPNI NKRKRTA+MLCFTSPHFTEIAK FGLE+D ETGL +PR +RP+TA   QDWMKPGTR DREEMVRILVEDLKA+V VLDMH+YSLLHYASISGWE T+DLLL+HG DPRQTCMTGETALHFAVSLRHG+AAE LLKRSQDLVNEADKDGDRAIHLAVQNGD E+V+LLVDYQADINSPNYRRVTPLA ACKRQDW+MVNHLLDKKA
Sbjct:   60 QIKKYHQMEAKVSQDDPMLAKMNKIPLQISLGDMRLLRETVIMKWKDINRSYQGPLLGETVLHRVCREGYLGALKFMLDPNSKSIFETETVDPNIPNKRKRTALMLCFTSPHFTEIAKHFGLEQDAETGLGVPRPRRPDTA---QDWMKPGTRADREEMVRILVEDLKADVNVLDMHDYSLLHYASISGWEGTIDLLLEHGIDPRQTCMTGETALHFAVSLRHGEAAEILLKRSQDLVNEADKDGDRAIHLAVQNGDHEIVDLLVDYQADINSPNYRRVTPLAVACKRQDWQMVNHLLDKKA 358
[Close]
BLAST of mRNA_L-elsbetiae_contig5629.13968.1 vs. uniprot
Match: D7G1C5_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1C5_ECTSI)

HSP 1 Score: 444 bits (1143), Expect = 9.120e-153
Identity = 226/301 (75.08%), Postives = 243/301 (80.73%), Query Frame = 1 
Query:    1 QIKKYHQMEAKVTQDDPILAKLNKVPIQISLGDMRLLRETVIMKWKDINRSYQGPLLGDTVLHRVCREGYLGALKFMLDPNSKSIFETETVDPNIVNKRKRTAMMLCFTSPHFTEIAKDFGLERDPETGLAIPRAKRPETAQTDQDWMKPGTRVDREEMVRILVEDLKANVKVLDMHEYSLLHYASISGWERTVDLLLDHGADPRQTCMTGETALHFAVSLRHGKAAETLLKRSQDLVNEADKDGDRAIHLAVQNGDQELVNLLVDYQADINSPNYRRVTPLAAACKRQDWRMVNHLLDKK 903
            QIKKYHQMEAKV+QDDPILAK+NK+P+QISLGDMRLLRETVIMKWKDINRSYQGPLLG+TVLHRVCREGYLGALKFMLDPNSKSIFETETVDPNI+NKRKRTA+MLCFTSPHFTEI K+FGLE+D ETGL +PR +RP+TAQ                                                  T+DLLL+HG DPRQTCMTGETALHFAVSLRHG+AAE LLKRSQDLVNEADKDGDRAIHLAVQNGD E+VNLLVDYQADINSPNYRRVTPLA ACKRQDW+MVNHLLDKK
Sbjct:   60 QIKKYHQMEAKVSQDDPILAKMNKIPLQISLGDMRLLRETVIMKWKDINRSYQGPLLGETVLHRVCREGYLGALKFMLDPNSKSIFETETVDPNILNKRKRTALMLCFTSPHFTEITKNFGLEQDTETGLGVPRPRRPDTAQG-------------------------------------------------TIDLLLEHGIDPRQTCMTGETALHFAVSLRHGEAAEILLKRSQDLVNEADKDGDRAIHLAVQNGDHEIVNLLVDYQADINSPNYRRVTPLAVACKRQDWQMVNHLLDKK 311
[Close]
BLAST of mRNA_L-elsbetiae_contig5629.13968.1 vs. uniprot
Match: A0A835Z5D7_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5D7_9STRA)

HSP 1 Score: 286 bits (731), Expect = 8.440e-88
Identity = 149/287 (51.92%), Postives = 191/287 (66.55%), Query Frame = 1 
Query:   46 DPILAKLNKVPIQISLGDMRLLRETVIMKWKDINRSYQGPLLGDTVLHRVCREGYLGALKFMLDPNSKSIFETETVDPNIVNKRKRTAMMLCFTSPHFTEIAKDFGLERDPETGLAIPRAKRPETAQTDQDWMKPGTRVDREEMVRILVEDLKANVKVLDMHEYSLLHYASISGWERTVDLLLDHGADPRQTCMTGETALHFAVSLRHGKAAETLLKRSQDLVNEADKDGDRAIHLAVQ-NGDQELVNLLVDYQADINSPNYRRVTPLAAACKRQDWRMVNHLLDKK 903
            DP++ + N+ P  ++ GDMR LRE VI +WKD+NR YQG   GDT+LH VCREGY G   FMLDP +KS FE  T+D N  NK+ RT +MLCFT P  T +AK  GLE+DPE G   P+AKRPE      DW+ PG R  RE +V  L+    A V  LD+H+Y+ LHYA++ GW  +V+ LL  GADP    +TGETALH A+  RHG AAE+LL  S  LV+E+D+DG RAIH A++    +E + LL D++AD+N+P+Y  VTPL  AC  QD   V+ LLD K
Sbjct:  189 DPLVERANRNPAAVAGGDMRKLRECVIQRWKDVNRPYQGVFGGDTLLHVVCREGYDGMAVFMLDPATKSAFEQVTLDVNATNKKGRTPLMLCFTPPSLTLVAKANGLEQDPEIGCGRPKAKRPEELTVAADWLPPGDREARERLVERLLA-AGARVNALDLHDYTCLHYAAMLGWVGSVEALLKAGADPGHKSVTGETALHLAIERRHGAAAESLLLASPSLVDESDRDGTRAIHTAIRCRCGREFLELLADHKADMNAPDYSGVTPLQLACSLQDHAAVSALLDLK 474
[Close]
BLAST of mRNA_L-elsbetiae_contig5629.13968.1 vs. uniprot
Match: F0Y8C8_AURAN (JmjC domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y8C8_AURAN)

HSP 1 Score: 191 bits (484), Expect = 5.770e-50
Identity = 107/289 (37.02%), Postives = 165/289 (57.09%), Query Frame = 1 
Query:   43 DDPILAKLNKVPIQISLGDMRLLRETVIMKWKDINRSYQGPLLGDTVLHRVCREGYLGALKFMLDPNSKSIFETETVDPNIVNKRKRTAMMLCFTSPHFTEIAKDFGLERDPETGLAIPRAKRPETAQTDQDWMKPGTRVDREEMVRILVEDLKANVKVLDMHEYSLLHYASISGWERTVDLLLDHGADPRQTCMT----GETALHFAVSLRHGKAAETLLKRSQDLVNEADKDGDRAIHLAVQNGDQELVNLLVDYQADINSPNYRRVTPLAAACKRQDWRMVNHLLD 897
            +DP  ++  K    I+LG+ R LRE +I  +  +N+ Y G    DT+LH VCREGYL  ++FM+DP + S F+T  +D N  N + RT + + FT P  T  A+  G+  D      +P+ ++PE    D DW++PGT   R +++ +L+ D  AN+  +D H++S LHYA + GW  TV+LLL+ GADPR    T    G+ AL  A   +H    + LL  +Q  +   + DG+ A+      GD E V  L ++ A++N+ +Y + +PL  AC+ QD  M++ LLD
Sbjct: 1161 NDPRGSRAAKTAESIALGNFRELREIIIGHFAQVNKRY-GAWDNDTLLHIVCREGYLRMVEFMVDPKNVSQFDTTEIDFNAENNKWRTPLHVVFTPPQETYCARKIGVHDD-----GLPKGEKPEGVTIDSDWIRPGTERHRMQVIELLI-DKGANIHQMDYHDHSPLHYACVWGWVDTVELLLEKGADPRADPETSNIAGQNALMAATEFKHVDVVDLLLSETQISIESKNVDGETALIYGALTGDVETVECLCEFGANVNAESYSKDSPLKRACRNQDVPMIHKLLD 1442
[Close]
BLAST of mRNA_L-elsbetiae_contig5629.13968.1 vs. uniprot
Match: F0YPL7_AURAN (JmjC domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YPL7_AURAN)

HSP 1 Score: 142 bits (358), Expect = 2.120e-33
Identity = 76/190 (40.00%), Postives = 115/190 (60.53%), Query Frame = 1 
Query:   43 DDPILAKLNKVPIQISLGDMRLLRETVIMKWKDINRSYQGPLLGDTVLHRVCREGYLGALKFMLDPNSKSIFETETVDPNIVNKRKRTAMMLCFTSPHFTEIAKDFGLERDPETGLAIPRAKRPETAQTDQDWMKPGTRVDREEMVRILVEDLKANVKVLDMHEYSLLHYASISGWERTVDLLLDHGADP 612
            +DP  ++  K    I+LG+ R LRE +I  +  +N+ Y G    DT+LH VCREGYL  ++FM+DP + S F+T  +D N  N + RT + + FT P  T  A+  G+  D      +P+ ++PE    D DW++PGT   R +++ +L+ D  AN+  +D H++S LHYA + GW  TV+LLL+ GADP
Sbjct:  381 NDPRGSRAAKTAESIALGNFRELREIIIGHFAQVNKRY-GAWDNDTLLHIVCREGYLRMVEFMVDPKNVSQFDTTEIDFNAENNKWRTPLHVVFTPPQETYCARKIGVHDD-----GLPKGEKPEGVTIDSDWIRPGTERHRMQVIELLI-DKGANIHQMDYHDHSPLHYACVWGWVDTVELLLEKGADP 563
[Close]
BLAST of mRNA_L-elsbetiae_contig5629.13968.1 vs. uniprot
Match: A0A8J2X0P4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X0P4_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 6.170e-15
Identity = 44/77 (57.14%), Postives = 51/77 (66.23%), Query Frame = 3 
Query:  906 EILKLARAIGDREADAARLKALK-AFGQWVPYADKMGKGIFYYNKVSRESRRQAPEDYVKDKEYIMKSATFGMHFYH 1133
            E  KL R     EA     K  K A G WVPY DK G+GIFYYN+VSR S+ + PEDY KD+ Y+MK AT+GMHFYH
Sbjct:  393 EYEKLKRL----EAAGKNKKGKKSAIGAWVPYRDKRGRGIFYYNRVSRVSQFEVPEDYEKDRRYLMKDATYGMHFYH 465
[Close]
BLAST of mRNA_L-elsbetiae_contig5629.13968.1 vs. uniprot
Match: A0A7S2BBB5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BBB5_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 2.850e-12
Identity = 34/76 (44.74%), Postives = 47/76 (61.84%), Query Frame = 3 
Query:  906 EILKLARAIGDREADAARLKALKAFGQWVPYADKMGKGIFYYNKVSRESRRQAPEDYVKDKEYIMKSATFGMHFYH 1133
            E  +L +  G     A R+ +   + QWVPY D   +  FYYNKVSRES+   P+DYV+D  Y++  AT+GM+FYH
Sbjct:  165 EAAELEQKAGRTGLTATRMTSKSPYQQWVPYTDTKSRKRFYYNKVSRESQWDMPDDYVRDPMYVITDATYGMNFYH 240
[Close]
BLAST of mRNA_L-elsbetiae_contig5629.13968.1 vs. uniprot
Match: A0A6H5I5C6_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5I5C6_9HYME)

HSP 1 Score: 68.6 bits (166), Expect = 9.710e-9
Identity = 46/114 (40.35%), Postives = 62/114 (54.39%), Query Frame = 1 
Query:  544 LHYASISGWERTVDLLLDHGADPRQTCMTGETALHFAVSLRHGKA---AETLLKRSQDL--VNEADKDGDRAIHLAVQNGDQELVNLLVDYQADINSPNYRRVTPLAAACKRQD 870
            LH A   G +RTV LLL  GADP      GET LH   S R   A   AETL++   D   ++   K G   +HLA+ NG++ L+ LL+   AD++SP+    T L  AC++ D
Sbjct:  899 LHLALNRGNKRTVKLLLKRGADPNLANAEGETPLHVVCSERINDAVELAETLIEYGGDRLRIDAVGKLGRTPLHLALNNGNKRLIELLLKAGADLDSPDAEGETGLHMACRKYD 1012
[Close]
BLAST of mRNA_L-elsbetiae_contig5629.13968.1 vs. uniprot
Match: UPI001458AE7D (serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI001458AE7D)

HSP 1 Score: 67.8 bits (164), Expect = 1.040e-8
Identity = 43/134 (32.09%), Postives = 66/134 (49.25%), Query Frame = 1 
Query:  457 RVDREEMVRILVEDLKANVKVLDMHEYSLLHYASISGWERTVDLLLDHGADPRQTCMTGETALHFAVSLRHGKAAETLLKRSQDLVNEADKDGDRAIHLAVQNGDQELVNLLVDYQADINSPNYRRVTPLAAAC 858
            R DR E+ R+L       +K  +    +LLH     G      +LLDHGA    T   G T+L + +  +    A+ LL R  ++V+  D +G  A+H+A++ G  E V LL+   A++NS     +TPL   C
Sbjct:   45 RDDRNELRRLLDNGADPGLKPFEDKSRALLHICCDKGHIECATILLDHGAAITVTDEWGMTSLMYCMVRQDMGMAKMLLSRDSEMVHCRDIEGKSALHMAIETGQPEFVELLLKNSANVNSFTDNGITPLMVLC 178
[Close]
BLAST of mRNA_L-elsbetiae_contig5629.13968.1 vs. uniprot
Match: A0A4Q2DHH1_9AGAR (AAA_16 domain-containing protein n=1 Tax=Candolleomyces aberdarensis TaxID=2316362 RepID=A0A4Q2DHH1_9AGAR)

HSP 1 Score: 67.8 bits (164), Expect = 1.660e-8
Identity = 42/118 (35.59%), Postives = 63/118 (53.39%), Query Frame = 1 
Query:  541 LLHYASISGWERTVDLLLDHGADPRQTCMTGE-TALHFAVSLRHGKAAETLLKRSQDLVNEADKDGDRAIHLAVQNGDQELVNLLVDYQADINSPNYRRVTPLAAACKRQDWRMVNHL 891
            LLH A          +LL+ GA+P   C   E TA+H A   +     E +LK S++ ++  DK    A+HLAV NG + LV +L+++ AD+N  ++R  TPL  AC    +   +HL
Sbjct:  877 LLHVAIKDDKLHVAQMLLELGANPNTPCGPNEWTAIHVAAFRQDPCFVELILKWSKNCISLQDKKRKTALHLAVLNGFESLVKILLEHGADVNGQDWRGNTPLLIACGFPSYLDASHL 994
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5629.13968.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2B1_9PHAE1.890e-19288.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1C5_ECTSI9.120e-15375.08Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A835Z5D7_9STRA8.440e-8851.92Ankyrin repeat-containing domain protein n=1 Tax=T... [more]
F0Y8C8_AURAN5.770e-5037.02JmjC domain-containing protein n=1 Tax=Aureococcus... [more]
F0YPL7_AURAN2.120e-3340.00JmjC domain-containing protein (Fragment) n=1 Tax=... [more]
A0A8J2X0P4_9STRA6.170e-1557.14Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2BBB5_9STRA2.850e-1244.74Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A6H5I5C6_9HYME9.710e-940.35Uncharacterized protein n=1 Tax=Trichogramma brass... [more]
UPI001458AE7D1.040e-832.09serine/threonine-protein phosphatase 6 regulatory ... [more]
A0A4Q2DHH1_9AGAR1.660e-835.59AAA_16 domain-containing protein n=1 Tax=Candolleo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5629contigL-elsbetiae_contig5629:3297..6638 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score434.1
Seed ortholog evalue5.3e-119
Seed eggNOG ortholog2880.D7G1C5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.temperature-gated cation channel activity
EggNOG OGsCOG0666@1,KOG0510@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-00_005590.1
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size1133
Cds size894
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816598.5814855-UTR-L-elsbetiae_contig5629:3296..33171622816598.5814855-UTR-L-elsbetiae_contig5629:3296..3317Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5629 3297..3317 +
1691683674.869649-UTR-L-elsbetiae_contig5629:3296..33171691683674.869649-UTR-L-elsbetiae_contig5629:3296..3317Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5629 3297..3317 +
1622816598.650201-UTR-L-elsbetiae_contig5629:5662..56641622816598.650201-UTR-L-elsbetiae_contig5629:5662..5664Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5629 5663..5664 +
1691683674.9336727-UTR-L-elsbetiae_contig5629:5662..56641691683674.9336727-UTR-L-elsbetiae_contig5629:5662..5664Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5629 5663..5664 +
1622816598.6681967-UTR-L-elsbetiae_contig5629:6122..62421622816598.6681967-UTR-L-elsbetiae_contig5629:6122..6242Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5629 6123..6242 +
1691683674.9448469-UTR-L-elsbetiae_contig5629:6122..62421691683674.9448469-UTR-L-elsbetiae_contig5629:6122..6242Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5629 6123..6242 +
1622816598.6799827-UTR-L-elsbetiae_contig5629:6542..66381622816598.6799827-UTR-L-elsbetiae_contig5629:6542..6638Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5629 6543..6638 +
1691683674.9562116-UTR-L-elsbetiae_contig5629:6542..66381691683674.9562116-UTR-L-elsbetiae_contig5629:6542..6638Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5629 6543..6638 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816598.5922742-CDS-L-elsbetiae_contig5629:3317..35021622816598.5922742-CDS-L-elsbetiae_contig5629:3317..3502Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5629 3318..3502 +
1691683674.8847854-CDS-L-elsbetiae_contig5629:3317..35021691683674.8847854-CDS-L-elsbetiae_contig5629:3317..3502Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5629 3318..3502 +
1622816598.606323-CDS-L-elsbetiae_contig5629:3968..41881622816598.606323-CDS-L-elsbetiae_contig5629:3968..4188Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5629 3969..4188 +
1691683674.895593-CDS-L-elsbetiae_contig5629:3968..41881691683674.895593-CDS-L-elsbetiae_contig5629:3968..4188Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5629 3969..4188 +
1622816598.6175678-CDS-L-elsbetiae_contig5629:4392..45051622816598.6175678-CDS-L-elsbetiae_contig5629:4392..4505Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5629 4393..4505 +
1691683674.904636-CDS-L-elsbetiae_contig5629:4392..45051691683674.904636-CDS-L-elsbetiae_contig5629:4392..4505Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5629 4393..4505 +
1622816598.6300821-CDS-L-elsbetiae_contig5629:4793..49831622816598.6300821-CDS-L-elsbetiae_contig5629:4793..4983Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5629 4794..4983 +
1691683674.913791-CDS-L-elsbetiae_contig5629:4793..49831691683674.913791-CDS-L-elsbetiae_contig5629:4793..4983Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5629 4794..4983 +
1622816598.6400182-CDS-L-elsbetiae_contig5629:5476..56621622816598.6400182-CDS-L-elsbetiae_contig5629:5476..5662Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5629 5477..5662 +
1691683674.924908-CDS-L-elsbetiae_contig5629:5476..56621691683674.924908-CDS-L-elsbetiae_contig5629:5476..5662Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5629 5477..5662 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5629.13968.1prot_L-elsbetiae_contig5629.13968.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5629 3318..5662 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5629.13968.1

>prot_L-elsbetiae_contig5629.13968.1 ID=prot_L-elsbetiae_contig5629.13968.1|Name=mRNA_L-elsbetiae_contig5629.13968.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=298bp
MEAKVTQDDPILAKLNKVPIQISLGDMRLLRETVIMKWKDINRSYQGPLL
GDTVLHRVCREGYLGALKFMLDPNSKSIFETETVDPNIVNKRKRTAMMLC
FTSPHFTEIAKDFGLERDPETGLAIPRAKRPETAQTDQDWMKPGTRVDRE
EMVRILVEDLKANVKVLDMHEYSLLHYASISGWERTVDLLLDHGADPRQT
CMTGETALHFAVSLRHGKAAETLLKRSQDLVNEADKDGDRAIHLAVQNGD
QELVNLLVDYQADINSPNYRRVTPLAAACKRQDWRMVNHLLDKKARY*
back to top

mRNA from alignment at L-elsbetiae_contig5629:3297..6638+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5629.13968.1 ID=mRNA_L-elsbetiae_contig5629.13968.1|Name=mRNA_L-elsbetiae_contig5629.13968.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3342bp|location=Sequence derived from alignment at L-elsbetiae_contig5629:3297..6638+ (Laminarionema elsbetiae ELsaHSoW15)
CAGATCAAGAAGTACCACCAGATGGAAGCCAAAGTTACCCAGGACGATCC
CATTTTGGCGAAGCTGAACAAGGTTCCCATACAGATTTCGCTCGGAGATA
TGCGGTTACTACGTGAGACCGTTATCATGAAGTGGAAGGACATCAACCGC
AGCTACCAGGGCCCCCTGCTGGGCGACACTGTGCTTCACCGGGTGTGTCG
TGAAGGGTGAGCAAACGAACAACGAATACGAAAACCGCCAAAGAGAGAGC
GAGGAAATGATATGTGTATTCACATTCCACGCTTGCTTGAAGAATTTAGA
GAGAATATTTTAGAGAGCGCTTACCTCCGGTTCAATATTCTCTTCTGCCT
CTGACTAGAAACCCCCGCTACCAGACAGGTGGACAAAGCTCCTTAAGCCT
CTCTCCAAGAGTGGTTCCTGAATACCTACACAAGCTAACGTACGTACTAA
GAGCGATAGTTTTTTGTGTTCTTCTTAAAAATAAACAATGAATCAAAGAT
GGAACCTACCCCACACTAGAGCAAGGACTCGATATGGGGTTCAAACGGTA
TTCCATACAGTGACGTAATATTTGGCGAAGCGATCATCACATTAAAAACC
GTCCCGATCTCTCTTCTACCCCGACAGTTAAAGGACCTAAAAAAACAAAA
TCAACCCCCCATGCCTGCCCAGATACCTGGGAGCTCTGAAGTTCATGCTG
GACCCAAACAGCAAATCCATCTTCGAGACGGAGACTGTTGACCCGAACAT
CGTGAACAAACGGAAGAGGACGGCGATGATGCTCTGTTTCACCAGTCCGC
ACTTCACCGAGATCGCCAAGGATTTTGGTCTCGAAAGAGACCCAGAAACA
GGGCTTGCAATACCTCGCGCAAAGCGCCCGGAGACGGCCCAGGTAAGTAT
CATCATGCGGTTGAATGTTAGCTTGGGAAGTTGTGGCTTGCTGCTTGCGC
TGGATGTCTGATGGGACAGTTTACTCTGCTGCATCCAAAGGATTGTATGC
CTGCTGCGTACATCTCGAATACAATCACACGAGCGCGGTATCTGCTGCCA
TGACTCTCGGTTGATGTATCAATCGGTCACCAAACTGAACGGACAGACGG
ACCAGGACTGGATGAAGCCGGGTACACGAGTCGATCGCGAAGAGATGGTG
CGCATTCTGGTCGAAGATCTGAAAGCCAATGTCAAAGTCCTTGATATGCA
CGAATACAGGTAAGCAAAAATTGCCTCTCAATAGTATGTATCTAGAGGTC
GAAACGCATGAAGGCATGTACACAGCGGCGACCGGCGGGTTTCGATATTT
CCACTGTATAATACGAGCGAGTTGTTGTGCGCAGGTCGCTCAAGCTTGAA
ACATTCACCCCTCTTAATGTTCGCTTCCCGTCAGCCACTGATAGCGAGCA
GAGCAGCCCTGAAGCTATATGCATTTGCAGATACCCTTGGCAATCGACGC
TTTCTTCGCCCGTGGTGCCGCAACTCCTTCCCCTGCCATTTCGTTAGTTT
GCTGCACTACGCCTCCATCAGCGGGTGGGAACGCACAGTGGACCTGCTCT
TGGACCACGGCGCGGACCCGCGGCAAACTTGCATGACAGGCGAGACGGCT
TTGCACTTTGCAGTGTCGCTCAGGCACGGCAAGGCGGCGGAAACGCTCTT
AAAGCGTTCGCAAGACCTCGTGAACGAAGCTGACAAGGTGAGGGTGTTTA
TTGCCGAGCAAAGTCCAAGAACCCCATCCGTCTTTTCTAAAATATCCTCG
ACACAAGAAAATACACCATTTCTTCGCGGAAAAAAGGAGGCCGTGCGCCC
GCTGAATGAATTCGTGCAATGCTCCAATGGTGCTCGGGATATCAATTGCA
CCCATCGCAAAAAAACTTTGCGGCGCATCAAACACAGTGAATGGGGATGC
GTCGGGAGCAGGTTGGTGTCTACGCGTGTGAAAGCAACCAGCCGCCAGCG
CCCTCCGTCCCGGCACTGCAGGGATGCATGGTAAAATATATGACCACATC
ATGTTTTGGCATGGGAGCACATCTACATCACTACTGCCTAGACTACCCCC
CCCCCCCCCCCCCCCCCCTACTTCCCGGCCCCGCGGGCTTTCATTACACG
GGGGGGGCGGCGCCGCACCCCGCGCGTGGAGAAACACGACAATTTCCCTA
TACTTGCGGCTCACGTTGTATTCAATTCAGGATGGGGATCGAGCCATCCA
CTTGGCAGTGCAAAACGGCGACCAAGAACTAGTTAACCTTTTAGTAGACT
ACCAGGCGGACATCAACTCGCCCAACTACAGACGAGTCACGCCCCTTGCG
GCGGCCTGTAAGCGCCAGGACTGGCGGATGGTTAACCACCTTTTGGACAA
AAAGGCGAGATACTGAAGGTAGTGTTGGAGTACCCATTAAGATGCAGCCG
CGAGTCAGTATTGTGTGCCGCATATGGCATGGCCAGTGTTTGTTTCCGCA
ACTTGTTCAGCTATCATCCGCCGATAAAAAGCTGTCCACATGATAACACC
TGATCGCCGTTGAGATATGCCACCACGTGCAAACAGGAAAGCCCAAAGGC
ATGCTCCACTCCAACGAACGAGTGCCACCCACACTACATACGCTTGAAAG
CCTGCTGTTTACTCGCACTTGTTGCATGCACCCGCAAGTCCCTCTTCCCA
ACCTCAACCTCAAAAACCTGCCCGTTTGAATGCTACTTCTTGTATGTACC
ATGACCGGATGGTGATGATGATGGTGGCAGGTCACTCACGAAGAGGAGGC
GTTCTTGCTTCTGGAGGGGCAGGCAGAGGAGAAGATTCGGTGGCGTCTGA
AAAGGGAGGAGGAGGAGCGGCTCAAGCTTGCGAGAGCCATAGGAGACAGG
GAGGCCGATGCCGCGAGGCTGAAGGCTTTAAAGGCGTTCGGCCAGTGGGT
GCCTTACGCAGACAAGATGGGCAAGGGGATATTTTACTACAACAAGGTAC
TACACTGCTGTTGTACACTAATTACGCGGACAATCTTTTATCTTTGGTCA
CCACATAAAGCCCACACAAAGCAACGTGACACTCCTGTGGTGTGTTAATT
TAGCAAGTCGAGCCTGCCCGCGATCATCGTGCATGCACAATTCGAGGTAT
TGCCGTGCACCAGCTCTTCTGTGTAACGCACGATACAAATAAATCCTTTC
GAAGATGACAAATAAATCGAGCCTTTCGATGACGCGGTCAATAGTTCGAT
CTCGGATGAACGATCGGCCTCCTTTTTTTCTATGATGCAATGCAAGGTGT
CCAGGGAGTCCCGGCGGCAGGCACCCGAAGATTATGTCAAGGATAAGGAG
TACATCATGAAGAGTGCGACCTTCGGAATGCACTTTTACCAC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5629:3297..6638+

>mRNA_L-elsbetiae_contig5629.13968.1 ID=mRNA_L-elsbetiae_contig5629.13968.1|Name=mRNA_L-elsbetiae_contig5629.13968.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1788bp|location=Sequence derived from alignment at L-elsbetiae_contig5629:3297..6638+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAAGCCAAAGTTACCCAGGACGATCCCATTTTGGCGAAGCTGAACAA
GGTTCCCATACAGATTTCGCTCGGAGATATGCGGTTACTACGTGAGACCG
TTATCATGAAGTGGAAGGACATCAACCGCAGCTACCAGGGCCCCCTGCTG
GGCGACACTGTGCTTCACCGGGTGTGTCGTGAAGGATGGAAGCCAAAGTT
ACCCAGGACGATCCCATTTTGGCGAAGCTGAACAAGGTTCCCATACAGAT
TTCGCTCGGAGATATGCGGTTACTACGTGAGACCGTTATCATGAAGTGGA
AGGACATCAACCGCAGCTACCAGGGCCCCCTGCTGGGCGACACTGTGCTT
CACCGGGTGTGTCGTGAAGGATACCTGGGAGCTCTGAAGTTCATGCTGGA
CCCAAACAGCAAATCCATCTTCGAGACGGAGACTGTTGACCCGAACATCG
TGAACAAACGGAAGAGGACGGCGATGATGCTCTGTTTCACCAGTCCGCAC
TTCACCGAGATCGCCAAGGATTTTGGTCTCGAAAGAGACCCAGAAACAGG
GCTTGCAATACCTCGCGCAAAGCGCCCGGAGACGGCCCAGATACCTGGGA
GCTCTGAAGTTCATGCTGGACCCAAACAGCAAATCCATCTTCGAGACGGA
GACTGTTGACCCGAACATCGTGAACAAACGGAAGAGGACGGCGATGATGC
TCTGTTTCACCAGTCCGCACTTCACCGAGATCGCCAAGGATTTTGGTCTC
GAAAGAGACCCAGAAACAGGGCTTGCAATACCTCGCGCAAAGCGCCCGGA
GACGGCCCAGACGGACCAGGACTGGATGAAGCCGGGTACACGAGTCGATC
GCGAAGAGATGGTGCGCATTCTGGTCGAAGATCTGAAAGCCAATGTCAAA
GTCCTTGATATGCACGAATACAGACGGACCAGGACTGGATGAAGCCGGGT
ACACGAGTCGATCGCGAAGAGATGGTGCGCATTCTGGTCGAAGATCTGAA
AGCCAATGTCAAAGTCCTTGATATGCACGAATACAGTTTGCTGCACTACG
CCTCCATCAGCGGGTGGGAACGCACAGTGGACCTGCTCTTGGACCACGGC
GCGGACCCGCGGCAAACTTGCATGACAGGCGAGACGGCTTTGCACTTTGC
AGTGTCGCTCAGGCACGGCAAGGCGGCGGAAACGCTCTTAAAGCGTTCGC
AAGACCTCGTGAACGAAGCTGACAAGTTTGCTGCACTACGCCTCCATCAG
CGGGTGGGAACGCACAGTGGACCTGCTCTTGGACCACGGCGCGGACCCGC
GGCAAACTTGCATGACAGGCGAGACGGCTTTGCACTTTGCAGTGTCGCTC
AGGCACGGCAAGGCGGCGGAAACGCTCTTAAAGCGTTCGCAAGACCTCGT
GAACGAAGCTGACAAGGATGGGGATCGAGCCATCCACTTGGCAGTGCAAA
ACGGCGACCAAGAACTAGTTAACCTTTTAGTAGACTACCAGGCGGACATC
AACTCGCCCAACTACAGACGAGTCACGCCCCTTGCGGCGGCCTGTAAGCG
CCAGGACTGGCGGATGGTTAACCACCTTTTGGACAAAAAGGCGAGATACT
GAGATGGGGATCGAGCCATCCACTTGGCAGTGCAAAACGGCGACCAAGAA
CTAGTTAACCTTTTAGTAGACTACCAGGCGGACATCAACTCGCCCAACTA
CAGACGAGTCACGCCCCTTGCGGCGGCCTGTAAGCGCCAGGACTGGCGGA
TGGTTAACCACCTTTTGGACAAAAAGGCGAGATACTGA
back to top